Wall clock time and date at job start Tue Mar 31 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.87109 * 2 1 4 4 C 1.54316 * 109.88385 * 121.01512 * 2 1 3 5 5 H 1.09003 * 110.72351 * 215.74218 * 4 2 1 6 6 N 1.46893 * 110.72252 * 339.01906 * 4 2 1 7 7 C 1.46901 * 111.00564 * 199.97334 * 6 4 2 8 8 C 1.47197 * 109.47660 * 179.97438 * 7 6 4 9 9 N 5.81521 * 72.15584 * 102.02175 * 2 1 3 10 10 C 1.55158 * 102.94139 * 97.38021 * 4 2 1 11 11 C 1.54917 * 101.57978 * 35.50252 * 10 4 2 12 12 N 1.47020 * 110.01051 * 238.90671 * 2 1 3 13 13 C 1.34776 * 125.65281 * 59.48427 * 12 2 1 14 14 O 1.21285 * 119.99841 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00365 * 179.97438 * 13 12 2 16 16 S 1.80997 * 109.47230 * 179.97438 * 15 13 12 17 17 C 1.76203 * 100.00139 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99670 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00206 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99884 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46734 * 120.00195 * 21 19 17 24 24 H 1.48498 * 109.47200 * 239.99812 * 21 19 17 25 25 H 1.09005 * 109.46851 * 298.98311 * 1 2 3 26 26 H 1.08999 * 109.47141 * 58.98238 * 1 2 3 27 27 H 1.09001 * 109.46987 * 178.98227 * 1 2 3 28 28 H 1.00897 * 111.00064 * 323.92730 * 6 4 2 29 29 H 1.09004 * 109.46860 * 300.00296 * 7 6 4 30 30 H 1.09007 * 109.46949 * 59.99463 * 7 6 4 31 31 H 1.08998 * 111.00511 * 277.42784 * 10 4 2 32 32 H 1.08996 * 111.04098 * 153.59117 * 10 4 2 33 33 H 1.08998 * 110.36726 * 81.82993 * 11 10 4 34 34 H 1.09005 * 110.36534 * 204.15515 * 11 10 4 35 35 H 1.09004 * 109.47135 * 299.99842 * 15 13 12 36 36 H 1.08993 * 109.47035 * 59.99497 * 15 13 12 37 37 H 0.97005 * 119.99836 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9642 -0.2792 1.6202 6 7 1.0254 -0.8028 2.2900 7 6 1.6245 -1.0677 3.6049 8 6 0.5655 -1.1153 4.6261 9 7 -0.2519 -1.1529 5.4141 10 6 2.3558 -2.1673 0.6944 11 6 2.8619 -1.8471 -0.7343 12 7 2.0331 -0.7134 -1.1830 13 6 1.7794 -0.3850 -2.4652 14 8 1.0808 0.5734 -2.7189 15 6 2.3639 -1.2085 -3.5839 16 16 1.8442 -0.5200 -5.1751 17 6 2.6469 -1.6423 -6.2709 18 1 3.2411 -2.4523 -5.8743 19 6 2.5156 -1.4854 -7.6437 20 7 1.7919 -0.4978 -8.1270 21 14 3.3672 -2.6748 -8.8054 22 1 4.1138 -3.6878 -8.0169 23 1 2.3519 -3.3549 -9.6492 24 1 4.3123 -1.9277 -9.6736 25 1 -0.3633 0.4980 0.8990 26 1 -0.3633 0.5296 -0.8807 27 1 -0.3633 -1.0275 -0.0183 28 1 0.4799 0.0459 2.3056 29 1 2.1485 -2.0232 3.5795 30 1 2.3295 -0.2732 3.8496 31 1 1.4505 -2.7735 0.6615 32 1 3.1310 -2.6583 1.2826 33 1 3.9135 -1.5617 -0.7091 34 1 2.7165 -2.7060 -1.3896 35 1 3.4518 -1.1910 -3.5179 36 1 2.0114 -2.2365 -3.5006 37 1 1.6998 -0.3884 -9.0864 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178147496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:12 Heat of formation + Delta-G solvation = -20.539487 kcal Electronic energy + Delta-G solvation = -19439.714674 eV Core-core repulsion = 16342.650671 eV Total energy + Delta-G solvation = -3097.064003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.27879 -39.11151 -37.71133 -35.77961 -34.57574 -32.71375 -31.86863 -30.08003 -27.71112 -27.47564 -25.80575 -23.97137 -21.21620 -20.30235 -19.52196 -18.93116 -17.95108 -17.22765 -16.87589 -16.63305 -16.46972 -16.21432 -15.70106 -15.18949 -15.11316 -14.52011 -14.45387 -14.20560 -13.75597 -13.62275 -13.47359 -13.23410 -13.10307 -13.06922 -12.90803 -12.88811 -12.59302 -12.47588 -12.30668 -11.76048 -11.68746 -11.54113 -11.14890 -10.80704 -10.25466 -9.65069 -9.45926 -8.66208 -8.33765 -6.11930 1.26086 1.42595 1.46315 1.57642 1.63478 1.68813 1.87380 2.14543 2.28689 2.99480 3.00547 3.24881 3.40948 3.50671 3.73936 3.94139 4.13750 4.27120 4.36359 4.41496 4.47959 4.53924 4.54134 4.67581 4.71245 4.78405 4.86684 5.11441 5.13540 5.35509 5.39438 5.43032 5.57368 5.93433 6.21054 6.24818 6.47876 6.65165 7.07618 7.20548 8.75724 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.046011 B = 0.003006 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.406985 B = 9313.366502 C = 9702.904959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.128 3.872 3 H 0.069 0.931 4 C 0.097 3.903 5 H 0.104 0.896 6 N -0.686 5.686 7 C 0.155 3.845 8 C 0.238 3.762 9 N -0.497 5.497 10 C -0.112 4.112 11 C 0.086 3.914 12 N -0.612 5.612 13 C 0.545 3.455 14 O -0.564 6.564 15 C -0.119 4.119 16 S -0.154 6.154 17 C -0.543 4.543 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.274 1.274 25 H 0.086 0.914 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.353 0.647 29 H 0.146 0.854 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 -4.741 23.368 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 H 0.087 0.913 4 C -0.012 4.012 5 H 0.121 0.879 6 N -0.322 5.322 7 C 0.025 3.975 8 C -0.079 4.079 9 N -0.176 5.176 10 C -0.150 4.150 11 C -0.036 4.036 12 N -0.347 5.347 13 C 0.333 3.667 14 O -0.443 6.443 15 C -0.270 4.270 16 S 0.073 5.927 17 C -0.690 4.690 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.199 1.199 25 H 0.105 0.895 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.175 0.825 29 H 0.164 0.836 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.815 -3.928 23.862 24.658 hybrid contribution 1.293 -0.447 -1.045 1.721 sum 6.108 -4.375 22.817 24.023 Atomic orbital electron populations 1.21932 0.95115 1.02206 1.01523 1.21734 0.94829 0.96020 0.84958 0.91280 1.22489 0.93781 0.96442 0.88535 0.87876 1.60571 1.24565 1.44354 1.02725 1.19787 0.88675 1.07310 0.81762 1.29705 0.93671 0.91085 0.93471 1.81285 1.11624 1.11272 1.13437 1.22898 1.03091 0.96043 0.92998 1.22733 0.95509 0.88252 0.97148 1.48445 1.51023 1.31712 1.03499 1.19721 0.79933 0.84098 0.82900 1.90680 1.39631 1.30303 1.83636 1.23299 1.04631 1.02805 0.96241 1.85602 1.68373 1.42694 0.96055 1.23215 1.36126 1.16078 0.93616 0.89875 1.26149 0.95881 0.97891 0.99372 1.70198 1.39100 1.31541 1.14035 0.84892 0.77878 0.77696 0.77389 1.17857 1.20049 1.19931 0.89510 0.95216 0.92413 0.82458 0.83625 0.86793 0.90447 0.85950 0.89078 0.90389 0.87506 0.87842 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.41 71.98 0.61 -2.70 16 2 C 0.13 2.40 3.40 45.34 0.15 2.55 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.10 0.74 3.11 46.10 0.14 0.89 16 5 H 0.10 0.22 7.90 -2.39 -0.02 0.20 16 6 N -0.69 -4.61 5.56 -495.18 -2.75 -7.36 16 7 C 0.16 0.26 6.02 84.50 0.51 0.77 16 8 C 0.24 2.78 15.69 89.44 1.40 4.18 16 9 N -0.50 -10.19 18.54 20.00 0.37 -9.82 16 10 C -0.11 -0.86 6.71 31.99 0.21 -0.65 16 11 C 0.09 1.25 6.69 86.86 0.58 1.84 16 12 N -0.61 -15.08 3.08 -788.04 -2.43 -17.51 16 13 C 0.55 20.27 7.65 87.66 0.67 20.94 16 14 O -0.56 -26.24 14.77 -3.05 -0.04 -26.29 16 15 C -0.12 -4.71 5.16 71.24 0.37 -4.34 16 16 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 17 C -0.54 -30.83 9.50 67.95 0.65 -30.18 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.66 5.49 84.86 0.47 1.12 16 20 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 21 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 23 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 H 0.09 1.38 6.23 -2.38 -0.01 1.37 16 26 H 0.03 0.92 6.77 -2.39 -0.02 0.90 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.35 2.70 6.41 -89.70 -0.58 2.12 16 29 H 0.15 -0.42 8.13 -2.38 -0.02 -0.44 16 30 H 0.11 -0.44 8.09 -2.38 -0.02 -0.46 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.23 7.48 -2.38 -0.02 1.21 16 35 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 36 H 0.10 3.76 7.85 -2.40 -0.02 3.74 16 37 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -84.55 328.30 2.57 -81.99 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.51 Total: 4.79 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.76 Total: -5.57 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -4.53 Total: -90.47 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.04 Total: -26.29 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -84.55 2.57 -81.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.446 kcal (2) G-P(sol) polarization free energy of solvation -84.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds