Wall clock time and date at job start Tue Mar 31 2020 03:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42909 * 113.99798 * 2 1 4 4 C 1.52999 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46836 * 179.97438 * 4 3 2 6 6 N 1.31126 * 126.55248 * 90.00286 * 5 4 3 7 7 C 1.34496 * 105.61883 * 179.97438 * 6 5 4 8 8 C 1.50702 * 126.29079 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.46901 * 89.99946 * 8 7 6 10 10 C 1.47965 * 111.00064 * 189.99915 * 9 8 7 11 11 C 1.53931 * 86.18239 * 222.42041 * 10 9 8 12 12 O 1.42894 * 113.73160 * 269.25510 * 11 10 9 13 13 C 1.50703 * 113.73518 * 138.07915 * 11 10 9 14 14 H 1.08000 * 119.99719 * 17.15762 * 13 11 10 15 15 C 1.37873 * 119.99883 * 197.15659 * 13 11 10 16 16 N 1.31515 * 119.99606 * 194.39693 * 15 13 11 17 17 Si 1.86800 * 120.00373 * 14.40572 * 15 13 11 18 18 H 1.48497 * 109.47317 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.46658 * 299.99749 * 17 15 13 20 20 H 1.48498 * 109.47245 * 59.99510 * 17 15 13 21 21 C 1.48191 * 111.07148 * 90.57075 * 9 8 7 22 22 N 1.29949 * 107.41899 * 0.23824 * 7 6 5 23 23 O 1.21300 * 110.25048 * 359.58212 * 22 7 6 24 24 H 1.08995 * 109.47268 * 60.00552 * 1 2 3 25 25 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47272 * 300.00189 * 1 2 3 27 27 H 1.08999 * 109.47147 * 59.99565 * 3 2 1 28 28 H 1.08999 * 109.46450 * 299.99766 * 3 2 1 29 29 H 1.08999 * 109.47489 * 59.99824 * 4 3 2 30 30 H 1.09003 * 109.47133 * 299.99694 * 4 3 2 31 31 H 1.09001 * 109.46671 * 330.00210 * 8 7 6 32 32 H 1.09004 * 109.46904 * 210.00104 * 8 7 6 33 33 H 1.08994 * 113.75787 * 108.09572 * 10 9 8 34 34 H 1.09003 * 113.75723 * 336.73815 * 10 9 8 35 35 H 0.96707 * 114.00278 * 174.15409 * 12 11 10 36 36 H 0.96998 * 120.00288 * 354.87234 * 16 15 13 37 37 H 1.09008 * 113.75708 * 23.23197 * 21 9 8 38 38 H 1.09000 * 113.82289 * 251.80905 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1482 2.5615 0.0000 6 7 4.4655 3.2756 1.0530 7 6 4.9770 4.4227 0.5720 8 6 5.4918 5.5809 1.3873 9 7 6.9242 5.3937 1.6538 10 6 7.4121 6.3779 2.6451 11 6 8.6478 6.5239 1.7388 12 8 9.7126 5.6305 2.0699 13 6 9.1085 7.9484 1.5663 14 1 8.7744 8.7110 2.2542 15 6 9.9563 8.2780 0.5302 16 7 10.5817 9.4349 0.5351 17 14 10.2166 7.0815 -0.8804 18 1 11.1676 7.6684 -1.8583 19 1 10.7716 5.8086 -0.3538 20 1 8.9182 6.8158 -1.5502 21 6 7.7496 6.0204 0.5946 22 7 4.9406 4.3511 -0.7250 23 8 4.4728 3.2877 -1.0739 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6441 0.8909 31 1 4.9498 5.6296 2.3317 32 1 5.3432 6.5086 0.8346 33 1 7.6320 5.9458 3.6213 34 1 6.8026 7.2795 2.7054 35 1 10.4545 5.6558 1.4500 36 1 10.3906 10.0867 1.2276 37 1 7.2390 6.8173 0.0538 38 1 8.2388 5.3031 -0.0645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307710851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:49 Heat of formation + Delta-G solvation = -9.773298 kcal Electronic energy + Delta-G solvation = -22072.450556 eV Core-core repulsion = 18533.100539 eV Total energy + Delta-G solvation = -3539.350017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.75005 -41.15323 -38.99216 -37.35756 -36.38599 -35.06705 -34.67691 -31.90562 -30.89745 -28.03209 -27.52570 -27.27988 -25.36005 -24.87761 -23.59799 -22.00905 -20.99350 -19.93746 -19.29937 -18.62194 -17.56250 -17.49449 -17.02800 -16.96556 -16.65392 -16.16984 -16.01212 -15.45493 -15.28498 -14.80171 -14.70964 -14.32888 -13.96238 -13.65133 -13.36979 -13.28866 -13.12058 -12.76441 -12.55446 -12.42866 -12.39705 -12.22598 -12.15657 -12.11351 -11.67532 -11.30842 -11.03489 -10.95374 -10.67035 -10.34575 -9.92774 -8.85394 -6.61449 0.04386 1.03411 1.32785 1.42891 1.59563 1.68035 2.31882 2.39349 2.76597 2.86074 2.97788 3.07297 3.64661 3.69694 3.87563 3.91541 3.95116 4.01725 4.17835 4.21867 4.36170 4.45657 4.54563 4.55805 4.56591 4.57693 4.72495 4.77033 4.87781 4.91186 4.96602 5.08914 5.16038 5.63456 5.85655 5.91586 6.11594 6.37761 6.95660 7.09417 7.21781 8.47886 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.037296 B = 0.003357 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.578939 B = 8338.206668 C = 8624.228484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.069 3.931 4 C -0.018 4.018 5 C 0.187 3.813 6 N -0.484 5.484 7 C 0.179 3.821 8 C 0.104 3.896 9 N -0.472 5.472 10 C 0.037 3.963 11 C 0.191 3.809 12 O -0.570 6.570 13 C -0.621 4.621 14 H 0.034 0.966 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 1.076 2.924 18 H -0.284 1.284 19 H -0.250 1.250 20 H -0.258 1.258 21 C -0.025 4.025 22 N -0.399 5.399 23 O 0.085 5.915 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.368 0.632 36 H 0.259 0.741 37 H 0.073 0.927 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.713 -17.882 -3.272 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.008 4.008 4 C -0.057 4.057 5 C -0.034 4.034 6 N -0.217 5.217 7 C -0.094 4.094 8 C -0.026 4.026 9 N -0.196 5.196 10 C -0.091 4.091 11 C 0.150 3.850 12 O -0.378 6.378 13 C -0.659 4.659 14 H 0.052 0.948 15 C -0.209 4.209 16 N -0.556 5.556 17 Si 0.897 3.103 18 H -0.210 1.210 19 H -0.175 1.175 20 H -0.182 1.182 21 C -0.154 4.154 22 N -0.106 5.106 23 O 0.024 5.976 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.218 0.782 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.800 -18.357 -4.081 26.591 hybrid contribution -0.671 2.093 0.946 2.393 sum -19.471 -16.264 -3.135 25.563 Atomic orbital electron populations 1.22966 0.78916 1.04190 1.00973 1.87792 1.21758 1.27106 1.95664 1.22317 0.91178 0.85463 1.01883 1.20113 0.93787 0.82943 1.08858 1.29098 0.95745 0.98489 0.80022 1.71871 1.16902 1.03317 1.29628 1.25690 0.99200 0.96541 0.87948 1.20984 0.91680 0.90629 0.99264 1.68465 1.01930 1.42965 1.06250 1.23901 0.94020 0.94049 0.97131 1.20372 0.85305 0.87306 0.91972 1.86344 1.31100 1.64681 1.55700 1.22448 1.34444 0.94024 1.14975 0.94753 1.27110 0.91331 1.00605 1.01836 1.70943 1.37796 1.09174 1.37665 0.83707 0.78152 0.74203 0.74220 1.21038 1.17515 1.18238 1.25008 0.97385 0.96898 0.96096 1.74672 1.17530 1.02160 1.16239 1.85262 1.56510 1.19887 1.35963 0.92938 0.88008 0.93352 0.92513 0.91543 0.84777 0.85603 0.86156 0.90717 0.89101 0.89561 0.78244 0.93197 0.90896 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.56 10.70 -148.98 -1.59 -7.16 16 3 C 0.07 0.87 5.92 71.98 0.43 1.30 16 4 C -0.02 -0.25 6.21 29.85 0.19 -0.06 16 5 C 0.19 4.25 7.77 88.38 0.69 4.94 16 6 N -0.48 -14.13 11.55 -303.20 -3.50 -17.64 16 7 C 0.18 5.87 7.78 138.46 1.08 6.95 16 8 C 0.10 3.42 5.42 85.56 0.46 3.88 16 9 N -0.47 -18.50 6.14 -914.73 -5.62 -24.12 16 10 C 0.04 1.51 7.34 86.41 0.63 2.14 16 11 C 0.19 9.08 1.07 -10.90 -0.01 9.07 16 12 O -0.57 -27.48 13.47 -148.98 -2.01 -29.49 16 13 C -0.62 -34.26 9.04 25.60 0.23 -34.03 16 14 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 15 C -0.01 -0.43 5.44 84.65 0.46 0.03 16 16 N -0.92 -55.65 13.70 21.45 0.29 -55.35 16 17 Si 1.08 48.17 24.55 68.60 1.68 49.85 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.25 -9.93 5.81 99.48 0.58 -9.35 16 20 H -0.26 -10.81 6.48 99.48 0.64 -10.16 16 21 C -0.02 -1.06 4.73 86.36 0.41 -0.65 16 22 N -0.40 -13.09 12.16 -60.31 -0.73 -13.82 16 23 O 0.08 2.25 11.31 74.89 0.85 3.10 16 24 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.12 3.41 8.08 -2.39 -0.02 3.39 16 32 H 0.07 2.41 7.39 -2.38 -0.02 2.40 16 33 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.09 3.27 7.87 -2.39 -0.02 3.25 16 35 H 0.37 16.56 6.07 -74.05 -0.45 16.11 16 36 H 0.26 15.80 8.73 -92.71 -0.81 14.99 16 37 H 0.07 3.18 7.32 -2.38 -0.02 3.17 16 38 H 0.07 3.01 6.86 -2.39 -0.02 2.99 16 Total: -1.00 -69.52 320.21 -4.42 -73.94 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.40 Total: 25.66 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.81 Total: -4.97 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -9.56 Total: -110.93 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -2.75 Total: -33.54 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.68 Total: 49.85 kcal Total: -69.52 -4.42 -73.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307710851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.164 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds