Wall clock time and date at job start Tue Mar 31 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48492 * 109.47227 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.46961 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37876 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00510 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47292 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46883 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99735 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00035 * 179.97438 * 12 11 10 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 12 17 17 N 1.46496 * 109.46953 * 179.97438 * 16 15 14 18 18 C 1.34764 * 124.18201 * 269.72459 * 17 16 15 19 19 O 1.21239 * 127.15436 * 0.02562 * 18 17 16 20 20 C 1.51580 * 105.68742 * 179.97438 * 18 17 16 21 21 N 1.47314 * 103.59395 * 0.32676 * 20 18 17 22 22 C 1.33795 * 124.17554 * 90.02908 * 17 16 15 23 23 O 1.21541 * 123.77101 * 359.95866 * 22 17 16 24 24 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47230 * 59.99814 * 9 7 2 26 26 H 1.08996 * 109.47747 * 300.00027 * 9 7 2 27 27 H 1.08998 * 109.46509 * 60.00400 * 10 9 7 28 28 H 1.08993 * 109.46955 * 299.99960 * 10 9 7 29 29 H 0.96998 * 120.00303 * 0.02562 * 11 10 9 30 30 H 1.09001 * 109.46665 * 60.00498 * 14 12 11 31 31 H 1.08993 * 109.47304 * 300.00054 * 14 12 11 32 32 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 33 33 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 34 34 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 35 35 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 36 36 H 1.08997 * 110.77288 * 241.71509 * 20 18 17 37 37 H 1.09007 * 110.56412 * 118.82922 * 20 18 17 38 38 H 0.96994 * 126.69254 * 179.76891 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0027 13 8 3.3994 -6.0980 -0.0040 14 6 1.4331 -7.4031 -0.0014 15 6 2.4274 -8.5661 -0.0029 16 6 1.6624 -9.8911 -0.0023 17 7 2.6144 -11.0045 -0.0042 18 6 3.1006 -11.5830 -1.1201 19 8 2.8428 -11.2909 -2.2682 20 6 4.0377 -12.6739 -0.6412 21 7 3.9576 -12.5794 0.8267 22 6 3.1040 -11.5766 1.1017 23 8 2.8094 -11.2302 2.2288 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8725 -3.6047 0.8877 28 1 2.8712 -3.6040 -0.8922 29 1 0.5427 -4.9308 -0.0005 30 1 0.8049 -7.4607 -0.8903 31 1 0.8082 -7.4610 0.8896 32 1 3.0527 -8.5083 -0.8938 33 1 3.0554 -8.5083 0.8862 34 1 1.0367 -9.9490 0.8884 35 1 1.0347 -9.9486 -0.8916 36 1 5.0557 -12.4864 -0.9826 37 1 3.6941 -13.6507 -0.9818 38 1 4.4287 -13.1322 1.4696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323757957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:12 Heat of formation + Delta-G solvation = -97.762139 kcal Electronic energy + Delta-G solvation = -21224.550332 eV Core-core repulsion = 17681.384833 eV Total energy + Delta-G solvation = -3543.165500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.66653 -39.29109 -38.91915 -36.45299 -36.02758 -34.83921 -33.02492 -32.76976 -29.82386 -28.34727 -27.38344 -24.76446 -23.29320 -22.77386 -20.93747 -20.66733 -19.93630 -18.43655 -17.45934 -17.18871 -16.72085 -16.31778 -15.77424 -15.76185 -15.58926 -14.98806 -14.56594 -14.48120 -14.38230 -14.33476 -14.05948 -13.24672 -13.14632 -12.63687 -12.25491 -12.08417 -11.92124 -11.26353 -11.20509 -11.01971 -10.96032 -10.65483 -10.61769 -10.31265 -10.16011 -9.93306 -9.80372 -9.45153 -9.18125 -8.53043 -8.34134 -6.08858 -4.11731 1.24145 1.80953 2.62740 2.71888 3.02802 3.31753 3.35394 3.38462 3.56023 3.71424 4.34392 4.42079 4.50277 4.67048 4.74527 4.78740 5.02608 5.10823 5.23725 5.28051 5.31609 5.43878 5.59269 5.91105 6.12540 6.30884 6.35995 6.36110 6.65455 6.75004 6.93947 6.97631 7.52068 7.62343 7.72764 7.89262 8.03339 8.28504 8.67531 8.94075 9.53007 11.02726 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.042804 B = 0.002336 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.988436 B =11981.006656 C =12060.883759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.505 3.495 13 O -0.553 6.553 14 C -0.138 4.138 15 C -0.119 4.119 16 C 0.118 3.882 17 N -0.575 5.575 18 C 0.519 3.481 19 O -0.466 6.466 20 C 0.062 3.938 21 N -0.731 5.731 22 C 0.700 3.300 23 O -0.538 6.538 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.398 0.602 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.395 -28.445 -0.847 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.373 5.373 12 C 0.290 3.710 13 O -0.431 6.431 14 C -0.179 4.179 15 C -0.158 4.158 16 C -0.003 4.003 17 N -0.321 5.321 18 C 0.306 3.694 19 O -0.335 6.335 20 C -0.066 4.066 21 N -0.396 5.396 22 C 0.401 3.599 23 O -0.411 6.411 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.232 0.768 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 3.732 -27.861 -0.896 28.124 hybrid contribution 0.168 0.732 0.244 0.790 sum 3.900 -27.128 -0.652 27.415 Atomic orbital electron populations 1.69945 1.06083 1.26989 1.50315 1.24999 0.94906 0.99413 0.94981 0.86563 0.79512 0.82625 0.78782 1.20107 1.21234 1.20111 1.21019 0.93210 0.90439 1.51449 0.92330 1.19317 0.94193 0.91125 0.97825 1.21714 0.96059 0.81644 1.00718 1.46341 1.10540 1.06616 1.73785 1.20495 0.88255 0.85611 0.76613 1.90676 1.14160 1.87889 1.50407 1.21547 0.99157 0.92507 1.04654 1.21644 0.98268 0.91263 1.04618 1.21800 0.90161 0.83377 1.04957 1.46385 1.43837 1.33895 1.07987 1.20907 0.80718 0.82849 0.84902 1.90852 1.59500 1.65213 1.17939 1.22474 1.02271 1.00442 0.81375 1.45430 1.48991 1.37466 1.07739 1.15899 0.79573 0.80130 0.84332 1.91047 1.63205 1.66524 1.20320 0.92784 0.95949 0.95939 0.92638 0.92634 0.76844 0.88663 0.88587 0.90582 0.90308 0.88288 0.88473 0.85797 0.85916 0.71442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.64 9.11 -34.45 -0.31 -14.96 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.56 5.56 -60.29 -0.33 -12.89 16 12 C 0.50 8.43 7.83 -10.99 -0.09 8.34 16 13 O -0.55 -11.51 15.98 5.56 0.09 -11.42 16 14 C -0.14 -1.53 5.70 -27.88 -0.16 -1.69 16 15 C -0.12 -1.36 4.83 -26.73 -0.13 -1.49 16 16 C 0.12 1.05 5.70 -4.05 -0.02 1.03 16 17 N -0.57 -5.20 2.60 -120.73 -0.31 -5.51 16 18 C 0.52 4.19 8.31 -10.56 -0.09 4.11 16 19 O -0.47 -5.21 17.75 5.59 0.10 -5.11 16 20 C 0.06 0.22 7.97 -4.32 -0.03 0.18 16 21 N -0.73 -3.68 6.58 -65.73 -0.43 -4.12 16 22 C 0.70 6.65 8.62 -88.02 -0.76 5.89 16 23 O -0.54 -7.19 17.48 5.33 0.09 -7.10 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.40 5.85 8.47 -40.82 -0.35 5.51 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.64 16 34 H 0.10 0.82 7.86 -51.93 -0.41 0.41 16 35 H 0.10 0.74 8.00 -51.93 -0.42 0.33 16 36 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.12 0.11 8.14 -51.92 -0.42 -0.32 16 38 H 0.44 1.17 8.96 -40.82 -0.37 0.80 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -37.07 335.02 -7.19 -44.26 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.30 Total: 0.11 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.85 Total: 5.74 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.35 Total: -48.05 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.28 Total: -23.62 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.07 -7.19 -44.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323757957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.506 kcal (2) G-P(sol) polarization free energy of solvation -37.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds