Wall clock time and date at job start Tue Mar 31 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48492 * 109.47227 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.46961 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37876 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00510 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47292 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46883 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99735 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00035 * 179.97438 * 12 11 10 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 12 17 17 N 1.46496 * 109.46953 * 179.97438 * 16 15 14 18 18 C 1.34764 * 124.18201 * 269.72459 * 17 16 15 19 19 O 1.21239 * 127.15436 * 0.02562 * 18 17 16 20 20 C 1.51580 * 105.68742 * 179.97438 * 18 17 16 21 21 N 1.47314 * 103.59395 * 0.32676 * 20 18 17 22 22 C 1.33795 * 124.17554 * 90.02908 * 17 16 15 23 23 O 1.21541 * 123.77101 * 359.95866 * 22 17 16 24 24 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47230 * 59.99814 * 9 7 2 26 26 H 1.08996 * 109.47747 * 300.00027 * 9 7 2 27 27 H 1.08998 * 109.46509 * 60.00400 * 10 9 7 28 28 H 1.08993 * 109.46955 * 299.99960 * 10 9 7 29 29 H 0.96998 * 120.00303 * 0.02562 * 11 10 9 30 30 H 1.09001 * 109.46665 * 60.00498 * 14 12 11 31 31 H 1.08993 * 109.47304 * 300.00054 * 14 12 11 32 32 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 33 33 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 34 34 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 35 35 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 36 36 H 1.08997 * 110.77288 * 241.71509 * 20 18 17 37 37 H 1.09007 * 110.56412 * 118.82922 * 20 18 17 38 38 H 0.96994 * 126.69254 * 179.76891 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0027 13 8 3.3994 -6.0980 -0.0040 14 6 1.4331 -7.4031 -0.0014 15 6 2.4274 -8.5661 -0.0029 16 6 1.6624 -9.8911 -0.0023 17 7 2.6144 -11.0045 -0.0042 18 6 3.1006 -11.5830 -1.1201 19 8 2.8428 -11.2909 -2.2682 20 6 4.0377 -12.6739 -0.6412 21 7 3.9576 -12.5794 0.8267 22 6 3.1040 -11.5766 1.1017 23 8 2.8094 -11.2302 2.2288 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8725 -3.6047 0.8877 28 1 2.8712 -3.6040 -0.8922 29 1 0.5427 -4.9308 -0.0005 30 1 0.8049 -7.4607 -0.8903 31 1 0.8082 -7.4610 0.8896 32 1 3.0527 -8.5083 -0.8938 33 1 3.0554 -8.5083 0.8862 34 1 1.0367 -9.9490 0.8884 35 1 1.0347 -9.9486 -0.8916 36 1 5.0557 -12.4864 -0.9826 37 1 3.6941 -13.6507 -0.9818 38 1 4.4287 -13.1322 1.4696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323757957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:12 Heat of formation + Delta-G solvation = -127.543897 kcal Electronic energy + Delta-G solvation = -21225.841766 eV Core-core repulsion = 17681.384833 eV Total energy + Delta-G solvation = -3544.456934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.29406 -40.70800 -39.64419 -37.17848 -36.92654 -36.42567 -34.82238 -33.84419 -31.62308 -29.05240 -28.23936 -26.55981 -24.07889 -23.74476 -22.73062 -21.34453 -21.29823 -19.08706 -18.59954 -18.06923 -18.02721 -17.58348 -16.92202 -16.74994 -16.53269 -16.28565 -16.19742 -15.72529 -15.27956 -15.00057 -14.77068 -14.62723 -14.41063 -14.25399 -13.49599 -13.22579 -13.10096 -12.88434 -12.86356 -12.54732 -12.23252 -12.04266 -11.87434 -11.67989 -11.49275 -11.31534 -10.99184 -10.78167 -10.61119 -10.40193 -10.01351 -8.25235 -6.35888 0.62750 1.20804 1.40725 1.43079 1.51142 1.67911 1.93301 2.26658 2.32376 2.47145 3.07530 3.09236 3.70297 3.75426 3.88666 4.12166 4.25498 4.33063 4.41893 4.44406 4.48575 4.49120 4.63595 4.69338 4.73609 4.84203 5.02616 5.17753 5.30519 5.49390 5.57192 5.77748 5.84965 6.04755 6.15365 6.39511 6.65157 6.77033 7.11249 7.31142 7.33347 8.86350 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.042804 B = 0.002336 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.988436 B =11981.006656 C =12060.883759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.718 5.718 12 C 0.501 3.499 13 O -0.598 6.598 14 C -0.125 4.125 15 C -0.110 4.110 16 C 0.119 3.881 17 N -0.582 5.582 18 C 0.513 3.487 19 O -0.502 6.502 20 C 0.073 3.927 21 N -0.711 5.711 22 C 0.693 3.307 23 O -0.585 6.585 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.413 0.587 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -29.943 -1.228 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.369 5.369 12 C 0.289 3.711 13 O -0.479 6.479 14 C -0.165 4.165 15 C -0.149 4.149 16 C -0.002 4.002 17 N -0.327 5.327 18 C 0.302 3.698 19 O -0.374 6.374 20 C -0.053 4.053 21 N -0.376 5.376 22 C 0.393 3.607 23 O -0.462 6.462 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.249 0.751 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.170 0.830 37 H 0.179 0.821 38 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 3.911 -29.421 -1.287 29.707 hybrid contribution 0.132 1.145 0.343 1.202 sum 4.042 -28.276 -0.944 28.579 Atomic orbital electron populations 1.70047 1.07493 1.28107 1.50848 1.25875 0.95834 1.03092 0.94367 0.85499 0.78324 0.78134 0.79102 1.19353 1.20441 1.19407 1.21448 0.93531 0.92081 1.51776 0.92498 1.19124 0.94188 0.91675 0.96415 1.21192 0.95094 0.82695 0.99489 1.46173 1.11221 1.05560 1.73968 1.21478 0.87982 0.86832 0.74805 1.90657 1.16470 1.88572 1.52240 1.21578 0.98816 0.88524 1.07606 1.21512 0.98103 0.93054 1.02272 1.21763 0.90060 0.82179 1.06160 1.46499 1.43882 1.33837 1.08493 1.21640 0.80705 0.83325 0.84101 1.90835 1.60903 1.66527 1.19113 1.22724 1.02536 1.00325 0.79726 1.45412 1.47316 1.35907 1.08992 1.16108 0.80058 0.80807 0.83677 1.91011 1.65066 1.68157 1.21957 0.92480 0.97184 0.97236 0.93950 0.93848 0.75066 0.85366 0.85646 0.92614 0.92973 0.87476 0.86807 0.83010 0.82081 0.69911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.14 6.14 5.61 86.38 0.48 6.62 16 11 N -0.72 -24.77 5.56 -463.05 -2.57 -27.35 16 12 C 0.50 16.58 7.83 87.66 0.69 17.26 16 13 O -0.60 -25.44 15.98 -3.04 -0.05 -25.49 16 14 C -0.13 -2.58 5.70 29.85 0.17 -2.41 16 15 C -0.11 -2.49 4.83 30.60 0.15 -2.35 16 16 C 0.12 2.00 5.70 86.38 0.49 2.49 16 17 N -0.58 -9.93 2.60 -773.14 -2.01 -11.94 16 18 C 0.51 7.46 8.31 87.94 0.73 8.19 16 19 O -0.50 -10.71 17.75 -2.90 -0.05 -10.76 16 20 C 0.07 0.27 7.97 85.76 0.68 0.96 16 21 N -0.71 -5.52 6.58 -480.30 -3.16 -8.68 16 22 C 0.69 12.50 8.62 179.44 1.55 14.05 16 23 O -0.59 -15.65 17.48 -3.84 -0.07 -15.71 16 24 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.41 11.75 8.47 -92.71 -0.79 10.97 16 30 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 34 H 0.11 1.63 7.86 -2.39 -0.02 1.61 16 35 H 0.11 1.53 8.00 -2.39 -0.02 1.51 16 36 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.16 -0.46 8.14 -2.38 -0.02 -0.48 16 38 H 0.45 1.28 8.96 -92.71 -0.83 0.45 16 Total: -1.00 -83.12 335.02 -0.33 -83.45 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -0.52 Total: 8.65 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.79 Total: 16.07 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -7.46 Total: -102.27 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.17 Total: -51.96 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -83.12 -0.33 -83.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323757957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.092 kcal (2) G-P(sol) polarization free energy of solvation -83.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds