Wall clock time and date at job start Tue Mar 31 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47460 * 269.99709 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00049 * 3 2 1 6 6 H 1.48503 * 109.46919 * 149.99579 * 3 2 1 7 7 C 1.38949 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99752 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00321 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99847 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00361 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99809 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47176 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99915 * 179.97438 * 13 12 10 15 15 O 1.21591 * 120.00465 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00155 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00519 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.43468 * 32.64554 * 17 16 14 19 19 C 1.51105 * 110.38397 * 270.30796 * 17 16 14 20 20 C 1.30532 * 111.10038 * 257.61900 * 19 17 16 21 21 C 1.51099 * 111.10544 * 0.02562 * 20 19 17 22 22 H 1.09003 * 110.38745 * 224.75119 * 21 20 19 23 23 C 1.52997 * 110.38893 * 102.37045 * 21 20 19 24 24 O 1.42901 * 109.46935 * 69.69929 * 23 21 20 25 25 C 1.54632 * 110.39122 * 155.00186 * 17 16 14 26 26 H 0.97000 * 119.99829 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99904 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47450 * 60.00069 * 12 10 9 29 29 H 1.09004 * 109.47523 * 300.00039 * 12 10 9 30 30 H 0.96991 * 120.00078 * 0.02562 * 13 12 10 31 31 H 0.97004 * 119.99844 * 0.02562 * 16 14 13 32 32 H 1.07994 * 124.45498 * 77.64548 * 19 17 16 33 33 H 1.08000 * 124.44835 * 179.97438 * 20 19 17 34 34 H 1.08996 * 109.47227 * 189.69599 * 23 21 20 35 35 H 1.08997 * 109.47379 * 309.70146 * 23 21 20 36 36 H 0.96703 * 114.00445 * 179.97438 * 24 23 21 37 37 H 1.08995 * 111.03420 * 336.14127 * 25 17 16 38 38 H 1.08998 * 111.03825 * 212.21074 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2437 -4.8629 0.0032 13 7 2.1957 -5.9765 0.0037 14 6 1.7464 -7.2471 0.0048 15 8 0.5509 -7.4694 0.0049 16 7 2.6221 -8.2716 0.0048 17 6 2.1338 -9.6528 0.0054 18 1 1.1958 -9.7251 -0.5452 19 6 1.9518 -10.1460 1.4220 20 6 2.9355 -10.9268 1.7778 21 6 3.9377 -11.0840 0.6580 22 1 4.2263 -12.1296 0.5506 23 6 5.1690 -10.2140 0.9187 24 8 5.9055 -10.7489 2.0203 25 6 3.1925 -10.5988 -0.6073 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3907 0.0016 28 1 0.6174 -4.9213 -0.8870 29 1 0.6166 -4.9201 0.8930 30 1 3.1493 -5.7993 0.0040 31 1 3.5758 -8.0944 0.0043 32 1 1.1173 -9.8870 2.0567 33 1 3.0221 -11.3980 2.7457 34 1 5.8007 -10.2029 0.0305 35 1 4.8528 -9.1975 1.1525 36 1 6.7016 -10.2467 2.2422 37 1 3.8638 -10.0560 -1.2726 38 1 2.7190 -11.4320 -1.1266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323829273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:53 Heat of formation + Delta-G solvation = -97.146293 kcal Electronic energy + Delta-G solvation = -21639.001118 eV Core-core repulsion = 18095.862323 eV Total energy + Delta-G solvation = -3543.138795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43445 -39.06009 -38.07157 -36.56606 -34.41080 -33.68662 -33.42692 -31.37482 -30.07768 -28.66817 -27.11588 -24.69604 -24.03754 -20.98760 -20.74348 -19.60855 -18.87729 -18.48999 -17.98859 -17.60318 -16.63751 -16.06627 -15.49963 -15.33868 -15.07801 -14.80772 -14.53654 -14.22999 -13.99191 -13.83632 -13.47247 -12.60924 -12.48711 -12.19136 -12.16754 -11.88629 -11.79493 -11.63574 -11.45478 -11.19412 -11.12898 -10.46542 -10.33904 -10.31302 -10.06604 -9.63958 -9.31842 -9.16967 -8.62995 -8.62368 -8.10290 -6.51727 -3.93811 1.94084 2.95413 3.11235 3.21730 3.27153 3.39616 3.74938 3.79507 4.08889 4.24278 4.43056 4.49420 4.71775 4.87357 4.90189 5.02381 5.12820 5.17049 5.29604 5.33777 5.51213 5.64630 5.66927 5.88411 5.95074 6.01034 6.08208 6.31126 6.50998 6.65168 6.75376 7.08973 7.29168 7.45617 7.92127 8.23026 8.44939 8.79899 9.04329 9.39346 9.87190 10.65210 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031799 B = 0.002869 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.325670 B = 9756.126622 C =10338.858305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.705 3.295 15 O -0.596 6.596 16 N -0.739 5.739 17 C 0.182 3.818 18 H 0.098 0.902 19 C -0.170 4.170 20 C -0.141 4.141 21 C -0.072 4.072 22 H 0.087 0.913 23 C 0.085 3.915 24 O -0.572 6.572 25 C -0.127 4.127 26 H 0.274 0.726 27 H 0.396 0.604 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.406 0.594 31 H 0.393 0.607 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.380 0.620 37 H 0.084 0.916 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -19.712 0.339 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.486 6.486 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.475 6.475 16 N -0.395 5.395 17 C 0.077 3.923 18 H 0.116 0.884 19 C -0.189 4.189 20 C -0.160 4.160 21 C -0.091 4.091 22 H 0.106 0.894 23 C 0.007 3.993 24 O -0.378 6.378 25 C -0.165 4.165 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.243 0.757 31 H 0.227 0.773 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.227 0.773 37 H 0.102 0.898 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.836 -20.120 0.301 20.951 hybrid contribution 1.056 1.529 0.136 1.863 sum 6.891 -18.591 0.437 19.832 Atomic orbital electron populations 1.69619 1.06010 1.28526 1.49319 1.25327 0.95667 0.99929 0.96804 0.85811 0.79221 0.80504 0.78478 1.20273 1.20794 1.19327 1.19725 0.93446 0.82016 1.48279 0.87703 1.41788 1.09503 1.04450 1.62643 1.19767 0.88288 0.85024 0.85482 1.90485 1.13774 1.86883 1.57415 1.20783 0.91220 0.84838 1.03142 1.44778 1.11172 1.03363 1.78885 1.15887 0.85290 0.80551 0.77798 1.90901 1.14001 1.84195 1.58363 1.45182 1.08714 1.04602 1.80965 1.20511 0.98160 0.79671 0.93988 0.88354 1.23694 0.99352 0.97954 0.97945 1.23187 0.94647 0.99372 0.98839 1.21041 0.93735 1.00663 0.93630 0.89436 1.22264 0.92103 0.96141 0.88760 1.86462 1.42161 1.56943 1.52213 1.22771 0.97663 0.99563 0.96493 0.91581 0.77001 0.90004 0.90032 0.75716 0.77286 0.85530 0.85614 0.93297 0.93433 0.77262 0.89779 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.90 13.05 55.50 0.72 -23.17 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 10 C 0.43 9.83 7.85 -10.99 -0.09 9.74 16 11 O -0.60 -15.23 15.24 5.55 0.08 -15.14 16 12 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 13 N -0.72 -12.19 5.53 -66.41 -0.37 -12.55 16 14 C 0.71 11.43 8.57 -86.92 -0.74 10.69 16 15 O -0.60 -11.61 15.99 5.29 0.08 -11.53 16 16 N -0.74 -8.85 5.08 -58.77 -0.30 -9.15 16 17 C 0.18 1.93 3.24 -68.03 -0.22 1.71 16 18 H 0.10 1.19 7.56 -51.93 -0.39 0.80 16 19 C -0.17 -1.83 10.41 -35.70 -0.37 -2.20 16 20 C -0.14 -1.34 9.97 -35.70 -0.36 -1.70 16 21 C -0.07 -0.58 3.17 -90.71 -0.29 -0.87 16 22 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 23 C 0.09 0.65 6.31 37.16 0.23 0.89 16 24 O -0.57 -4.82 13.54 -35.23 -0.48 -5.30 16 25 C -0.13 -0.95 6.32 -25.00 -0.16 -1.11 16 26 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.40 9.47 7.90 -40.82 -0.32 9.14 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.41 6.60 7.45 -40.82 -0.30 6.29 16 31 H 0.39 3.86 7.25 -40.82 -0.30 3.57 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.05 0.30 8.10 -51.93 -0.42 -0.12 16 35 H 0.05 0.38 6.79 -51.93 -0.35 0.03 16 36 H 0.38 1.66 9.12 45.56 0.42 2.08 16 37 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -33.05 327.88 -6.78 -39.83 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -4.12 Total: 18.62 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -2.26 Total: 11.67 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.00 Total: -58.55 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.31 Total: -31.97 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.05 -6.78 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323829273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.321 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds