Wall clock time and date at job start Tue Mar 31 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47460 * 269.99709 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00049 * 3 2 1 6 6 H 1.48503 * 109.46919 * 149.99579 * 3 2 1 7 7 C 1.38949 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99752 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00321 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99847 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00361 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99809 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47176 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99915 * 179.97438 * 13 12 10 15 15 O 1.21591 * 120.00465 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00155 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00519 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.43468 * 32.64554 * 17 16 14 19 19 C 1.51105 * 110.38397 * 270.30796 * 17 16 14 20 20 C 1.30532 * 111.10038 * 257.61900 * 19 17 16 21 21 C 1.51099 * 111.10544 * 0.02562 * 20 19 17 22 22 H 1.09003 * 110.38745 * 224.75119 * 21 20 19 23 23 C 1.52997 * 110.38893 * 102.37045 * 21 20 19 24 24 O 1.42901 * 109.46935 * 69.69929 * 23 21 20 25 25 C 1.54632 * 110.39122 * 155.00186 * 17 16 14 26 26 H 0.97000 * 119.99829 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99904 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47450 * 60.00069 * 12 10 9 29 29 H 1.09004 * 109.47523 * 300.00039 * 12 10 9 30 30 H 0.96991 * 120.00078 * 0.02562 * 13 12 10 31 31 H 0.97004 * 119.99844 * 0.02562 * 16 14 13 32 32 H 1.07994 * 124.45498 * 77.64548 * 19 17 16 33 33 H 1.08000 * 124.44835 * 179.97438 * 20 19 17 34 34 H 1.08996 * 109.47227 * 189.69599 * 23 21 20 35 35 H 1.08997 * 109.47379 * 309.70146 * 23 21 20 36 36 H 0.96703 * 114.00445 * 179.97438 * 24 23 21 37 37 H 1.08995 * 111.03420 * 336.14127 * 25 17 16 38 38 H 1.08998 * 111.03825 * 212.21074 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2437 -4.8629 0.0032 13 7 2.1957 -5.9765 0.0037 14 6 1.7464 -7.2471 0.0048 15 8 0.5509 -7.4694 0.0049 16 7 2.6221 -8.2716 0.0048 17 6 2.1338 -9.6528 0.0054 18 1 1.1958 -9.7251 -0.5452 19 6 1.9518 -10.1460 1.4220 20 6 2.9355 -10.9268 1.7778 21 6 3.9377 -11.0840 0.6580 22 1 4.2263 -12.1296 0.5506 23 6 5.1690 -10.2140 0.9187 24 8 5.9055 -10.7489 2.0203 25 6 3.1925 -10.5988 -0.6073 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3907 0.0016 28 1 0.6174 -4.9213 -0.8870 29 1 0.6166 -4.9201 0.8930 30 1 3.1493 -5.7993 0.0040 31 1 3.5758 -8.0944 0.0043 32 1 1.1173 -9.8870 2.0567 33 1 3.0221 -11.3980 2.7457 34 1 5.8007 -10.2029 0.0305 35 1 4.8528 -9.1975 1.1525 36 1 6.7016 -10.2467 2.2422 37 1 3.8638 -10.0560 -1.2726 38 1 2.7190 -11.4320 -1.1266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323829273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:52 Heat of formation + Delta-G solvation = -124.976223 kcal Electronic energy + Delta-G solvation = -21640.207914 eV Core-core repulsion = 18095.862323 eV Total energy + Delta-G solvation = -3544.345591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51169 -40.38626 -39.58664 -37.23066 -36.22862 -35.25999 -34.53956 -33.35823 -30.78223 -29.79597 -28.41008 -26.37092 -24.94948 -22.20992 -21.56432 -21.32748 -20.16696 -19.74053 -19.51182 -18.24995 -17.68100 -17.44204 -16.92378 -16.67681 -16.51199 -16.10296 -15.65789 -15.58466 -15.40871 -15.11272 -14.82842 -13.94786 -13.77037 -13.54145 -13.24702 -13.15157 -12.89534 -12.82767 -12.47570 -12.45351 -12.14893 -12.12338 -11.90579 -11.56569 -11.48115 -10.85628 -10.55366 -10.42415 -10.11726 -10.09874 -9.84695 -8.50746 -6.01046 1.07775 1.36822 1.43169 1.55729 1.79182 1.90136 2.12465 2.29441 3.06046 3.16602 3.23695 3.37031 3.52376 3.81127 4.09854 4.18644 4.23192 4.38837 4.43377 4.46525 4.50431 4.62625 4.69002 4.81983 4.92710 5.07529 5.19590 5.31203 5.39023 5.50253 5.56928 5.81278 5.91900 5.97558 6.48290 6.89679 7.02542 7.03677 7.43147 7.54087 7.94588 8.66260 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031799 B = 0.002869 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.325670 B = 9756.126622 C =10338.858305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.704 3.296 15 O -0.630 6.630 16 N -0.721 5.721 17 C 0.177 3.823 18 H 0.081 0.919 19 C -0.194 4.194 20 C -0.127 4.127 21 C -0.072 4.072 22 H 0.097 0.903 23 C 0.083 3.917 24 O -0.591 6.591 25 C -0.114 4.114 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.410 0.590 31 H 0.406 0.594 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.396 0.604 37 H 0.099 0.901 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 -20.374 -0.076 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.512 6.512 16 N -0.377 5.377 17 C 0.073 3.927 18 H 0.099 0.901 19 C -0.213 4.213 20 C -0.146 4.146 21 C -0.091 4.091 22 H 0.115 0.885 23 C 0.006 3.994 24 O -0.400 6.400 25 C -0.152 4.152 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.247 0.753 31 H 0.242 0.758 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.246 0.754 37 H 0.118 0.882 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.092 -20.818 -0.111 21.993 hybrid contribution 0.706 1.623 0.308 1.797 sum 7.798 -19.195 0.197 20.720 Atomic orbital electron populations 1.69687 1.07043 1.29638 1.49324 1.26139 0.96529 1.02710 0.95784 0.84862 0.77920 0.76446 0.78723 1.19523 1.19724 1.19379 1.19746 0.92984 0.83526 1.50382 0.89503 1.41837 1.09600 1.04600 1.63450 1.20400 0.88116 0.85872 0.83487 1.90461 1.15123 1.87554 1.58022 1.20577 0.91025 0.83119 1.03974 1.44692 1.10947 1.03267 1.79287 1.16007 0.85261 0.80795 0.77537 1.90879 1.15683 1.84637 1.59982 1.45123 1.08875 1.04322 1.79369 1.20675 0.98735 0.79239 0.94088 0.90091 1.23587 0.99842 0.99687 0.98204 1.23371 0.94213 0.97679 0.99309 1.21093 0.93533 1.01441 0.92995 0.88455 1.22307 0.92200 0.95456 0.89475 1.86416 1.43217 1.57751 1.52580 1.22774 0.96726 0.99245 0.96420 0.91073 0.76713 0.89014 0.89266 0.75287 0.75774 0.87226 0.85398 0.91179 0.94094 0.75407 0.88206 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.34 -18.51 9.68 84.04 0.81 -17.70 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.07 5.29 -306.99 -1.62 -29.70 16 10 C 0.43 19.99 7.85 87.66 0.69 20.67 16 11 O -0.62 -31.85 15.24 -3.07 -0.05 -31.90 16 12 C 0.14 5.25 6.15 85.63 0.53 5.77 16 13 N -0.72 -23.90 5.53 -482.29 -2.67 -26.57 16 14 C 0.70 22.45 8.57 179.05 1.53 23.98 16 15 O -0.63 -24.58 15.99 -4.00 -0.06 -24.64 16 16 N -0.72 -16.46 5.08 -458.11 -2.33 -18.79 16 17 C 0.18 3.59 3.24 44.93 0.15 3.74 16 18 H 0.08 1.95 7.56 -2.39 -0.02 1.93 16 19 C -0.19 -4.11 10.41 26.26 0.27 -3.84 16 20 C -0.13 -2.24 9.97 26.25 0.26 -1.97 16 21 C -0.07 -0.98 3.17 -10.85 -0.03 -1.01 16 22 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 23 C 0.08 1.06 6.31 71.98 0.45 1.51 16 24 O -0.59 -8.64 13.54 -148.98 -2.02 -10.66 16 25 C -0.11 -1.40 6.32 31.71 0.20 -1.20 16 26 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 27 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 28 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 30 H 0.41 12.99 7.45 -92.71 -0.69 12.30 16 31 H 0.41 7.24 7.25 -92.71 -0.67 6.57 16 32 H 0.11 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.07 0.61 8.10 -2.39 -0.02 0.59 16 35 H 0.04 0.57 6.79 -2.39 -0.02 0.55 16 36 H 0.40 2.65 9.12 -74.06 -0.68 1.97 16 37 H 0.10 0.96 7.79 -2.39 -0.02 0.94 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.36 327.88 -2.74 -73.10 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -1.64 Total: 44.19 kcal Atomic # 6 Polarization: 24.51 SS G_CDS: 5.33 Total: 29.84 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -6.33 Total: -123.52 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -2.13 Total: -67.20 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -70.36 -2.74 -73.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323829273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.875 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds