Wall clock time and date at job start Tue Mar 31 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47142 * 179.97438 * 7 6 4 9 9 O 1.21290 * 119.99806 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99714 * 179.97438 * 8 7 6 11 11 C 1.37105 * 119.99929 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99799 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00135 * 180.02562 * 11 10 8 14 14 N 1.31421 * 120.00154 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00191 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47055 * 89.99877 * 15 13 11 17 17 H 1.48495 * 109.47483 * 209.99912 * 15 13 11 18 18 H 1.48500 * 109.47125 * 330.00060 * 15 13 11 19 19 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 20 20 O 1.21284 * 119.99754 * 180.27842 * 19 2 1 21 21 C 1.50696 * 120.00137 * 0.28058 * 19 2 1 22 22 C 1.53001 * 117.49887 * 248.61985 * 21 19 2 23 23 C 1.52994 * 59.99933 * 252.50574 * 22 21 19 24 24 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 25 25 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 26 26 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 28 28 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 29 29 H 0.97000 * 119.99813 * 0.02562 * 6 4 3 30 30 H 1.08997 * 109.47383 * 300.00029 * 7 6 4 31 31 H 1.09000 * 109.47008 * 60.00245 * 7 6 4 32 32 H 0.97001 * 120.00536 * 0.02562 * 10 8 7 33 33 H 0.97000 * 119.99834 * 180.02562 * 14 13 11 34 34 H 1.09004 * 115.54642 * 34.32831 * 21 19 2 35 35 H 1.09001 * 117.49733 * 0.02562 * 22 21 19 36 36 H 1.08997 * 117.49999 * 145.01700 * 22 21 19 37 37 H 1.09004 * 117.50553 * 252.50777 * 23 22 21 38 38 H 1.09012 * 117.51513 * 107.47863 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 4.1199 4.5729 -3.0484 9 8 4.4189 5.1005 -1.9980 10 7 4.4616 5.1536 -4.2156 11 6 5.1468 6.3412 -4.2157 12 1 5.4130 6.8110 -3.2804 13 6 5.4986 6.9402 -5.4190 14 7 5.1751 6.3682 -6.5571 15 14 6.4314 8.5586 -5.4191 16 1 7.8916 8.2883 -5.4125 17 1 6.0771 9.3341 -6.6349 18 1 6.0672 9.3400 -4.2099 19 6 2.1388 -1.1672 0.0057 20 8 3.3517 -1.1672 0.0108 21 6 1.3854 -2.4723 0.0058 22 6 1.4552 -3.3283 1.2720 23 6 2.2073 -3.7627 0.0124 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8898 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6063 2.0296 0.5094 28 1 3.1478 1.1396 0.5181 29 1 3.4299 3.3951 -0.9299 30 1 3.9587 2.5066 -3.5581 31 1 2.4169 3.3961 -3.5662 32 1 4.2229 4.7314 -5.0556 33 1 5.4211 6.7862 -7.3971 34 1 0.4493 -2.4747 -0.5528 35 1 2.0459 -2.9473 2.1051 36 1 0.5650 -3.8940 1.5468 37 1 1.8120 -4.6142 -0.5415 38 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324390849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:39 Heat of formation + Delta-G solvation = -77.092221 kcal Electronic energy + Delta-G solvation = -21583.424058 eV Core-core repulsion = 18041.154873 eV Total energy + Delta-G solvation = -3542.269185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.50241 -39.27998 -38.10112 -36.45278 -35.51545 -34.43223 -33.66581 -31.39776 -29.82339 -27.36769 -26.70049 -24.64122 -23.54645 -22.71109 -20.42174 -19.64820 -19.10855 -18.14436 -17.72129 -17.36594 -16.54485 -15.70239 -15.47020 -15.29529 -15.12452 -14.78620 -14.37564 -14.22076 -13.90213 -13.71442 -13.26564 -13.04849 -12.85973 -12.57154 -12.24001 -12.19606 -11.82623 -11.70689 -11.63678 -11.12594 -10.90814 -10.77030 -10.46311 -10.32621 -10.05001 -9.97078 -9.64143 -8.83231 -8.80484 -8.63173 -8.10736 -6.51889 -3.94047 2.27201 2.65798 2.79170 3.11626 3.21780 3.26625 3.43864 3.63681 3.73426 4.11297 4.22795 4.49536 4.59771 4.78628 4.84440 4.87138 4.96900 5.02189 5.16617 5.22612 5.26806 5.29544 5.47755 5.52619 5.64676 5.85356 5.89388 5.96162 6.06303 6.14796 6.66238 7.12305 7.45616 7.76776 7.91471 8.01742 8.41300 8.45716 9.03990 9.38657 9.86399 10.65025 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.045706 B = 0.002664 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.468871 B =10509.728072 C =10598.508910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.597 5.597 3 C 0.098 3.902 4 C 0.495 3.505 5 O -0.542 6.542 6 N -0.706 5.706 7 C 0.110 3.890 8 C 0.428 3.572 9 O -0.597 6.597 10 N -0.549 5.549 11 C -0.305 4.305 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.895 5.895 15 Si 0.934 3.066 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.550 3.450 20 O -0.536 6.536 21 C -0.191 4.191 22 C -0.153 4.153 23 C -0.148 4.148 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.411 0.589 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.274 0.726 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 -15.247 12.938 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.329 5.329 3 C -0.029 4.029 4 C 0.279 3.721 5 O -0.419 6.419 6 N -0.361 5.361 7 C -0.018 4.018 8 C 0.214 3.786 9 O -0.484 6.484 10 N -0.184 5.184 11 C -0.434 4.434 12 H 0.123 0.877 13 C -0.178 4.178 14 N -0.535 5.535 15 Si 0.760 3.240 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.193 1.193 19 C 0.338 3.662 20 O -0.412 6.412 21 C -0.212 4.212 22 C -0.191 4.191 23 C -0.185 4.185 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.249 0.751 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.828 -15.292 12.750 22.664 hybrid contribution 0.310 0.988 -0.537 1.166 sum -10.518 -14.304 12.214 21.550 Atomic orbital electron populations 1.21865 0.78702 1.03142 1.02578 1.47252 1.07214 1.04773 1.73656 1.21309 1.00361 0.86516 0.94710 1.21054 0.78209 0.80829 0.91990 1.90678 1.51571 1.53634 1.46010 1.45672 1.57335 1.23667 1.09390 1.20939 1.00841 0.96347 0.83650 1.19736 0.86226 0.87440 0.85191 1.90492 1.60494 1.66195 1.31228 1.41802 1.48783 1.21199 1.06596 1.19733 1.31429 0.97677 0.94597 0.87656 1.25336 0.97831 0.99990 0.94602 1.69621 1.46164 1.40018 0.97704 0.85803 0.79417 0.80829 0.77920 1.20241 1.20795 1.19307 1.19657 0.87250 0.84299 0.74986 1.90706 1.13917 1.87126 1.49440 1.22180 1.02892 0.90658 1.05511 1.22942 1.03212 1.01543 0.91385 1.22969 1.00197 0.95286 1.00066 0.91962 0.90573 0.90868 0.87202 0.86748 0.75105 0.89922 0.89919 0.77034 0.91577 0.85664 0.88261 0.87781 0.87853 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.05 59.85 0.60 1.22 16 2 N -0.60 -6.90 2.36 -182.95 -0.43 -7.33 16 3 C 0.10 1.16 5.93 -5.19 -0.03 1.13 16 4 C 0.50 7.96 7.90 -10.99 -0.09 7.87 16 5 O -0.54 -10.49 16.43 5.56 0.09 -10.40 16 6 N -0.71 -11.87 5.53 -61.47 -0.34 -12.20 16 7 C 0.11 2.08 6.15 -5.19 -0.03 2.05 16 8 C 0.43 9.93 7.85 -10.99 -0.09 9.85 16 9 O -0.60 -15.34 15.24 5.55 0.08 -15.25 16 10 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 11 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 12 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 13 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 14 N -0.89 -24.09 13.05 55.50 0.72 -23.36 16 15 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 C 0.55 7.30 7.46 -10.99 -0.08 7.22 16 20 O -0.54 -9.21 15.84 5.55 0.09 -9.12 16 21 C -0.19 -1.80 4.79 -91.77 -0.44 -2.24 16 22 C -0.15 -1.09 10.23 -26.73 -0.27 -1.37 16 23 C -0.15 -1.29 10.04 -26.74 -0.27 -1.56 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.41 6.64 -51.93 -0.34 0.07 16 26 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 27 H 0.11 0.90 7.89 -51.93 -0.41 0.49 16 28 H 0.11 1.38 7.42 -51.93 -0.39 1.00 16 29 H 0.41 6.62 7.44 -40.82 -0.30 6.31 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.40 9.57 7.90 -40.82 -0.32 9.25 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.13 0.95 7.27 -51.93 -0.38 0.57 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.14 7.67 -51.92 -0.40 0.75 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -35.03 334.64 -5.76 -40.79 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.00 Total: 13.81 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: -0.94 Total: 16.24 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.11 Total: -56.73 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: 0.26 Total: -34.77 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.03 -5.76 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324390849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.305 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds