Wall clock time and date at job start Tue Mar 31 2020 03:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47142 * 179.97438 * 7 6 4 9 9 O 1.21290 * 119.99806 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99714 * 179.97438 * 8 7 6 11 11 C 1.37105 * 119.99929 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99799 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00135 * 180.02562 * 11 10 8 14 14 N 1.31421 * 120.00154 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00191 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47055 * 89.99877 * 15 13 11 17 17 H 1.48495 * 109.47483 * 209.99912 * 15 13 11 18 18 H 1.48500 * 109.47125 * 330.00060 * 15 13 11 19 19 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 20 20 O 1.21284 * 119.99754 * 180.27842 * 19 2 1 21 21 C 1.50696 * 120.00137 * 0.28058 * 19 2 1 22 22 C 1.53001 * 117.49887 * 248.61985 * 21 19 2 23 23 C 1.52994 * 59.99933 * 252.50574 * 22 21 19 24 24 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 25 25 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 26 26 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 28 28 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 29 29 H 0.97000 * 119.99813 * 0.02562 * 6 4 3 30 30 H 1.08997 * 109.47383 * 300.00029 * 7 6 4 31 31 H 1.09000 * 109.47008 * 60.00245 * 7 6 4 32 32 H 0.97001 * 120.00536 * 0.02562 * 10 8 7 33 33 H 0.97000 * 119.99834 * 180.02562 * 14 13 11 34 34 H 1.09004 * 115.54642 * 34.32831 * 21 19 2 35 35 H 1.09001 * 117.49733 * 0.02562 * 22 21 19 36 36 H 1.08997 * 117.49999 * 145.01700 * 22 21 19 37 37 H 1.09004 * 117.50553 * 252.50777 * 23 22 21 38 38 H 1.09012 * 117.51513 * 107.47863 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 4.1199 4.5729 -3.0484 9 8 4.4189 5.1005 -1.9980 10 7 4.4616 5.1536 -4.2156 11 6 5.1468 6.3412 -4.2157 12 1 5.4130 6.8110 -3.2804 13 6 5.4986 6.9402 -5.4190 14 7 5.1751 6.3682 -6.5571 15 14 6.4314 8.5586 -5.4191 16 1 7.8916 8.2883 -5.4125 17 1 6.0771 9.3341 -6.6349 18 1 6.0672 9.3400 -4.2099 19 6 2.1388 -1.1672 0.0057 20 8 3.3517 -1.1672 0.0108 21 6 1.3854 -2.4723 0.0058 22 6 1.4552 -3.3283 1.2720 23 6 2.2073 -3.7627 0.0124 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8898 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6063 2.0296 0.5094 28 1 3.1478 1.1396 0.5181 29 1 3.4299 3.3951 -0.9299 30 1 3.9587 2.5066 -3.5581 31 1 2.4169 3.3961 -3.5662 32 1 4.2229 4.7314 -5.0556 33 1 5.4211 6.7862 -7.3971 34 1 0.4493 -2.4747 -0.5528 35 1 2.0459 -2.9473 2.1051 36 1 0.5650 -3.8940 1.5468 37 1 1.8120 -4.6142 -0.5415 38 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324390849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:38 Heat of formation + Delta-G solvation = -103.886437 kcal Electronic energy + Delta-G solvation = -21584.585942 eV Core-core repulsion = 18041.154873 eV Total energy + Delta-G solvation = -3543.431069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55354 -40.68017 -39.79794 -37.21428 -36.52424 -36.23533 -35.31622 -33.40777 -30.97242 -28.76969 -27.54645 -26.42688 -24.51012 -23.31144 -21.70424 -21.42558 -20.18873 -19.95280 -18.82793 -18.50816 -17.63051 -17.33266 -16.82799 -16.65083 -16.47036 -16.10364 -15.75344 -15.63151 -15.35410 -14.92749 -14.56708 -13.99429 -13.83932 -13.80628 -13.56599 -13.53978 -13.23649 -12.94165 -12.81812 -12.48019 -12.42611 -12.13439 -11.59271 -11.56288 -11.43303 -11.32267 -10.95919 -10.59969 -10.25722 -10.11316 -9.79323 -8.53248 -6.03887 1.30992 1.34860 1.41775 1.51806 1.54586 1.77355 1.87859 2.17191 2.34122 2.90970 3.09288 3.13738 3.49767 3.72502 3.82746 3.98537 4.09690 4.18323 4.25855 4.31035 4.34425 4.38442 4.39463 4.70080 4.74216 4.88556 4.95826 5.02884 5.21666 5.22627 5.32839 5.36273 5.89097 6.25694 6.41520 6.48209 7.00668 7.04608 7.12578 7.41053 7.90766 8.63755 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.045706 B = 0.002664 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.468871 B =10509.728072 C =10598.508910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.597 5.597 3 C 0.100 3.900 4 C 0.494 3.506 5 O -0.577 6.577 6 N -0.705 5.705 7 C 0.122 3.878 8 C 0.433 3.567 9 O -0.622 6.622 10 N -0.560 5.560 11 C -0.337 4.337 12 H 0.087 0.913 13 C -0.012 4.012 14 N -0.917 5.917 15 Si 0.999 3.001 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.268 1.268 19 C 0.535 3.465 20 O -0.589 6.589 21 C -0.202 4.202 22 C -0.127 4.127 23 C -0.161 4.161 24 H 0.051 0.949 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.154 0.846 28 H 0.111 0.889 29 H 0.416 0.584 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.398 0.602 33 H 0.280 0.720 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 -15.593 13.900 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.328 5.328 3 C -0.027 4.027 4 C 0.281 3.719 5 O -0.456 6.456 6 N -0.360 5.360 7 C -0.006 4.006 8 C 0.220 3.780 9 O -0.510 6.510 10 N -0.195 5.195 11 C -0.467 4.467 12 H 0.105 0.895 13 C -0.212 4.212 14 N -0.557 5.557 15 Si 0.821 3.179 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.193 1.193 19 C 0.326 3.674 20 O -0.470 6.470 21 C -0.223 4.223 22 C -0.164 4.164 23 C -0.199 4.199 24 H 0.069 0.931 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.171 0.829 28 H 0.129 0.871 29 H 0.254 0.746 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.232 0.768 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.109 0.891 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.460 -15.646 13.724 24.257 hybrid contribution 0.774 1.050 -0.815 1.539 sum -11.686 -14.596 12.910 22.721 Atomic orbital electron populations 1.22141 0.76196 1.05775 1.02663 1.47490 1.08818 1.04110 1.72373 1.21432 1.01478 0.87981 0.91796 1.21842 0.76864 0.79729 0.93483 1.90659 1.52958 1.54447 1.47565 1.45701 1.57630 1.24240 1.08470 1.20733 1.00705 0.93766 0.85358 1.20377 0.85173 0.88186 0.84245 1.90468 1.61253 1.67287 1.32013 1.41861 1.49281 1.21114 1.07250 1.19754 1.33359 0.99085 0.94469 0.89469 1.26167 0.98128 1.03038 0.93899 1.69688 1.46547 1.41287 0.98196 0.84845 0.78137 0.76722 0.78148 1.19630 1.19562 1.19282 1.20453 0.86998 0.85982 0.73974 1.90672 1.16258 1.88018 1.52006 1.22260 1.03318 0.88841 1.07900 1.23056 1.03651 0.99701 0.89970 1.23030 0.98865 0.95820 1.02145 0.93054 0.87895 0.88454 0.82872 0.87073 0.74583 0.89767 0.88615 0.76769 0.91033 0.83468 0.89053 0.84338 0.85611 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 10.05 127.77 1.28 2.21 16 2 N -0.60 -12.89 2.36 -851.13 -2.01 -14.90 16 3 C 0.10 2.23 5.93 85.63 0.51 2.74 16 4 C 0.49 15.57 7.90 87.66 0.69 16.27 16 5 O -0.58 -22.21 16.43 -3.03 -0.05 -22.26 16 6 N -0.71 -23.39 5.53 -466.79 -2.58 -25.97 16 7 C 0.12 4.62 6.15 85.64 0.53 5.15 16 8 C 0.43 20.30 7.85 87.66 0.69 20.99 16 9 O -0.62 -32.29 15.24 -3.06 -0.05 -32.34 16 10 N -0.56 -28.56 5.29 -306.99 -1.62 -30.18 16 11 C -0.34 -18.76 9.68 84.04 0.81 -17.94 16 12 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 13 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 14 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 15 Si 1.00 42.00 29.55 68.60 2.03 44.03 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 C 0.54 13.98 7.46 87.66 0.65 14.63 16 20 O -0.59 -20.89 15.84 -3.04 -0.05 -20.94 16 21 C -0.20 -3.48 4.79 -11.54 -0.06 -3.53 16 22 C -0.13 -1.49 10.23 30.59 0.31 -1.18 16 23 C -0.16 -2.65 10.04 30.59 0.31 -2.35 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.74 6.64 -2.39 -0.02 0.72 16 26 H 0.10 0.76 7.89 -2.39 -0.02 0.74 16 27 H 0.15 2.05 7.89 -2.39 -0.02 2.03 16 28 H 0.11 2.63 7.42 -2.39 -0.02 2.61 16 29 H 0.42 13.17 7.44 -92.71 -0.69 12.48 16 30 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.40 19.61 7.90 -92.71 -0.73 18.87 16 33 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.15 1.83 7.27 -2.39 -0.02 1.81 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 1.78 7.67 -2.38 -0.02 1.76 16 Total: -1.00 -77.52 334.64 1.84 -75.69 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.32 Total: 39.00 kcal Atomic # 6 Polarization: 30.63 SS G_CDS: 6.20 Total: 36.83 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -5.93 Total: -120.01 kcal Atomic # 8 Polarization: -75.39 SS G_CDS: -0.14 Total: -75.54 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -77.52 1.84 -75.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324390849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.198 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds