Wall clock time and date at job start Tue Mar 31 2020 02:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.46639 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.46964 * 180.02562 * 17 16 15 19 19 C 1.34773 * 124.17313 * 269.72244 * 18 17 16 20 20 O 1.21235 * 127.15527 * 359.97438 * 19 18 17 21 21 C 1.51576 * 105.68455 * 179.97438 * 19 18 17 22 22 N 1.47312 * 103.59370 * 0.31835 * 21 19 18 23 23 C 1.33784 * 124.18414 * 90.02167 * 18 17 16 24 24 O 1.21540 * 123.76984 * 359.96312 * 23 18 17 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 30 30 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 31 31 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 32 32 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 33 33 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 34 34 H 1.08998 * 109.46914 * 299.99267 * 17 16 15 35 35 H 1.08995 * 109.47392 * 59.99589 * 17 16 15 36 36 H 1.09004 * 110.76222 * 241.71544 * 21 19 18 37 37 H 1.08996 * 110.56638 * 118.83150 * 21 19 18 38 38 H 0.97001 * 126.69176 * 179.76988 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 6 3.2105 -0.4665 6.0082 18 7 3.2585 0.4746 7.1299 19 6 4.3323 1.2271 7.4413 20 8 5.4003 1.2517 6.8681 21 6 3.9270 2.0362 8.6573 22 7 2.5446 1.5995 8.9187 23 6 2.2439 0.6889 7.9752 24 8 1.1709 0.1231 7.9000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.2490 -1.6316 1.1527 30 1 1.9776 -1.5506 3.8326 31 1 3.6492 -1.1202 3.3980 32 1 3.3726 1.0773 4.5141 33 1 1.7011 0.6461 4.9483 34 1 2.5381 -1.2888 6.2528 35 1 4.2099 -0.8584 5.8191 36 1 3.9570 3.1037 8.4386 37 1 4.5702 1.8014 9.5053 38 1 1.9643 1.9083 9.6320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327860069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:20 Heat of formation + Delta-G solvation = -90.986855 kcal Electronic energy + Delta-G solvation = -21799.006517 eV Core-core repulsion = 18256.134816 eV Total energy + Delta-G solvation = -3542.871701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.56866 -38.92028 -38.81995 -36.36003 -35.90299 -34.74964 -32.79503 -32.28676 -29.21706 -28.16003 -26.97121 -25.23053 -23.25590 -22.91352 -20.81937 -20.51248 -19.33482 -18.34865 -17.36179 -17.21841 -16.83987 -15.89031 -15.60873 -15.48970 -15.38203 -15.09010 -14.47225 -14.37563 -14.06184 -13.93858 -13.64496 -13.05367 -12.53303 -12.38085 -12.05780 -11.72213 -11.58057 -11.16623 -11.03912 -10.95853 -10.80293 -10.67158 -10.51262 -10.28804 -10.21457 -10.04100 -9.83847 -9.03692 -8.96798 -8.52699 -7.87026 -6.10504 -4.19781 1.33650 1.91167 2.72661 2.81046 3.25748 3.32157 3.34073 3.45232 3.66001 4.11205 4.39279 4.44100 4.58571 4.78358 4.96992 5.01320 5.17288 5.21695 5.23478 5.44139 5.50464 5.64290 5.89618 6.11133 6.32249 6.39387 6.75656 6.85593 7.00112 7.07449 7.18445 7.50156 7.59352 7.72130 7.82069 7.94437 8.17708 8.70820 8.80694 9.17810 9.48008 10.95522 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.036645 B = 0.002875 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.912472 B = 9735.168038 C =10005.520490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.710 5.710 13 C 0.500 3.500 14 O -0.557 6.557 15 C -0.138 4.138 16 C -0.118 4.118 17 C 0.118 3.882 18 N -0.574 5.574 19 C 0.519 3.481 20 O -0.466 6.466 21 C 0.062 3.938 22 N -0.731 5.731 23 C 0.700 3.300 24 O -0.539 6.539 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -1.189 23.273 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.437 6.437 15 C -0.179 4.179 16 C -0.157 4.157 17 C -0.003 4.003 18 N -0.321 5.321 19 C 0.306 3.694 20 O -0.335 6.335 21 C -0.066 4.066 22 N -0.397 5.397 23 C 0.401 3.599 24 O -0.411 6.411 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 5.667 -0.586 22.677 23.382 hybrid contribution 0.158 -0.712 -0.598 0.943 sum 5.826 -1.298 22.078 22.871 Atomic orbital electron populations 1.22074 0.98525 0.99082 1.00867 1.18726 0.91008 0.93976 0.80129 0.93468 1.21234 1.32381 1.13214 0.90378 0.92073 1.24904 0.94813 0.94986 0.99086 1.69909 1.35854 1.22526 1.23847 0.86441 0.78590 0.79831 0.82183 1.20568 1.19843 1.21079 1.46526 1.65114 1.13540 1.10620 1.20379 0.78720 0.87556 0.84838 1.90654 1.51462 1.16289 1.85260 1.21560 1.03140 0.99379 0.93833 1.21629 1.03414 0.98635 0.91997 1.21828 1.03974 0.90832 0.83651 1.46400 1.14910 1.41099 1.29654 1.20901 0.83530 0.79784 0.85192 1.90849 1.22636 1.64181 1.55837 1.22470 0.84441 1.01716 0.97936 1.45427 1.16067 1.44816 1.33367 1.15895 0.83650 0.80572 0.79798 1.91042 1.22671 1.52988 1.74440 0.95484 0.96686 0.89192 0.92592 0.77907 0.89091 0.89093 0.90619 0.90403 0.88408 0.88553 0.85817 0.85968 0.71493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.26 6.85 2.56 -69.09 -0.18 6.67 16 3 H 0.05 1.42 7.58 -51.92 -0.39 1.03 16 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.28 11.32 55.43 0.63 -24.66 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.71 -14.94 5.07 -54.93 -0.28 -15.22 16 13 C 0.50 10.01 7.79 -10.98 -0.09 9.92 16 14 O -0.56 -13.59 15.65 5.56 0.09 -13.50 16 15 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 16 C -0.12 -1.60 4.83 -26.73 -0.13 -1.73 16 17 C 0.12 1.24 5.70 -4.04 -0.02 1.21 16 18 N -0.57 -5.95 2.60 -120.73 -0.31 -6.27 16 19 C 0.52 4.82 8.32 -10.56 -0.09 4.73 16 20 O -0.47 -5.77 17.75 5.60 0.10 -5.67 16 21 C 0.06 0.28 7.97 -4.32 -0.03 0.25 16 22 N -0.73 -4.43 6.58 -65.74 -0.43 -4.86 16 23 C 0.70 7.46 8.62 -88.03 -0.76 6.70 16 24 O -0.54 -7.81 17.48 5.33 0.09 -7.71 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.39 6.96 8.54 -40.82 -0.35 6.61 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.16 8.10 -51.93 -0.42 0.73 16 33 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.10 0.95 7.86 -51.93 -0.41 0.54 16 35 H 0.10 0.88 8.00 -51.93 -0.42 0.46 16 36 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.44 1.57 8.96 -40.82 -0.37 1.20 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -36.29 330.21 -6.83 -43.12 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.17 Total: 4.63 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -1.51 Total: 9.34 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.40 Total: -51.00 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: 0.28 Total: -26.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.29 -6.83 -43.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327860069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.868 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds