Wall clock time and date at job start Tue Mar 31 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 C 1.46503 * 126.68513 * 179.84385 * 6 5 3 8 8 C 1.50707 * 109.46690 * 269.98018 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99890 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00317 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47487 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47281 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47162 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99999 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99837 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46714 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47238 * 119.99716 * 18 16 14 21 21 H 1.48497 * 109.47290 * 240.00117 * 18 16 14 22 22 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 23 23 O 1.21540 * 123.76923 * 359.97080 * 22 2 1 24 24 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 27 27 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 28 28 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 29 29 H 1.08990 * 109.47656 * 29.97642 * 7 6 5 30 30 H 1.08996 * 109.47168 * 149.98340 * 7 6 5 31 31 H 0.97001 * 119.99796 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.46362 * 299.99850 * 11 10 8 33 33 H 1.08996 * 109.46868 * 59.99591 * 11 10 8 34 34 H 1.09006 * 109.47110 * 299.99906 * 12 11 10 35 35 H 1.09002 * 109.47077 * 59.99571 * 12 11 10 36 36 H 1.09000 * 109.47072 * 299.99543 * 13 12 11 37 37 H 1.09002 * 109.47452 * 59.99756 * 13 12 11 38 38 H 0.97005 * 119.99519 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8060 -0.0128 8 6 5.0040 -2.1323 -1.4356 9 8 4.4141 -1.6041 -2.3543 10 7 5.9946 -3.0109 -1.6872 11 6 6.3591 -3.3277 -3.0703 12 6 7.5033 -4.3433 -3.0764 13 6 7.8844 -4.6736 -4.5209 14 6 9.0110 -5.6745 -4.5269 15 1 9.4151 -6.0382 -3.5937 16 6 9.5266 -6.1250 -5.7236 17 7 9.0348 -5.6816 -6.8599 18 14 10.9236 -7.3650 -5.7311 19 1 11.2942 -7.7015 -4.3330 20 1 10.4889 -8.5961 -6.4384 21 1 12.0987 -6.7827 -6.4276 22 6 2.2166 -1.1068 -0.0056 23 8 1.7603 -2.2333 -0.0109 24 1 -0.3634 -0.0053 1.0276 25 1 -0.3633 -0.8873 -0.5184 26 1 -0.3633 0.8927 -0.5093 27 1 4.1790 0.9699 0.8983 28 1 4.1768 0.9794 -0.8945 29 1 5.4924 -1.3842 0.5024 30 1 4.3110 -2.7154 0.4967 31 1 6.4666 -3.4330 -0.9524 32 1 5.4961 -3.7490 -3.5860 33 1 6.6782 -2.4183 -3.5793 34 1 8.3662 -3.9216 -2.5608 35 1 7.1846 -5.2528 -2.5672 36 1 7.0217 -5.0952 -5.0369 37 1 8.2033 -3.7639 -5.0297 38 1 9.3978 -5.9983 -7.7019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329992252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:29 Heat of formation + Delta-G solvation = -80.697587 kcal Electronic energy + Delta-G solvation = -21527.894053 eV Core-core repulsion = 17985.468528 eV Total energy + Delta-G solvation = -3542.425525 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.60343 -39.66487 -38.80847 -36.45363 -35.72290 -35.22890 -33.39428 -31.56716 -30.46201 -27.56672 -27.42432 -26.09703 -23.33060 -22.65568 -21.03599 -20.72365 -19.96925 -17.91157 -17.83296 -17.02523 -16.79135 -16.47424 -16.03286 -15.77329 -15.33735 -14.84378 -14.50465 -14.47156 -14.38892 -14.29262 -14.03376 -13.44575 -13.04409 -12.93705 -12.52354 -12.33303 -11.88370 -11.72019 -11.22933 -10.95059 -10.79820 -10.61305 -10.58326 -10.33818 -10.13534 -9.92276 -9.60121 -9.22461 -9.08111 -8.90437 -8.40791 -6.05097 -4.08383 1.29598 1.66053 2.50829 2.58375 2.68744 3.27801 3.32493 3.35777 3.39058 3.68089 4.28506 4.41448 4.57081 4.68979 4.76309 4.86237 4.89854 4.96461 5.17296 5.28262 5.30912 5.43606 5.63901 5.71085 5.94969 6.09529 6.36434 6.53678 6.74635 6.75071 6.94607 6.99530 7.53651 7.59843 7.71613 7.75714 7.93428 8.21447 8.34438 8.98587 9.56160 11.06233 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.045174 B = 0.002457 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.670722 B =11392.282238 C =11445.397473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.579 5.579 3 C 0.526 3.474 4 O -0.473 6.473 5 C 0.065 3.935 6 N -0.609 5.609 7 C 0.133 3.867 8 C 0.486 3.514 9 O -0.534 6.534 10 N -0.722 5.722 11 C 0.117 3.883 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.706 3.294 23 O -0.537 6.537 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.400 0.600 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 12.341 18.746 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C 0.314 3.686 4 O -0.343 6.343 5 C -0.061 4.061 6 N -0.347 5.347 7 C 0.008 3.992 8 C 0.269 3.731 9 O -0.411 6.411 10 N -0.373 5.373 11 C -0.006 4.006 12 C -0.158 4.158 13 C -0.015 4.015 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.408 3.592 23 O -0.410 6.410 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.234 0.766 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.380 12.631 17.875 25.146 hybrid contribution 1.050 -0.924 0.071 1.400 sum -11.330 11.707 17.945 24.238 Atomic orbital electron populations 1.21840 0.74906 1.04904 1.03598 1.46227 1.09684 1.08056 1.68534 1.20843 0.88853 0.84696 0.74204 1.90822 1.79180 1.17886 1.46447 1.22545 0.95937 0.80731 1.06888 1.46940 1.04770 1.06210 1.76769 1.21188 0.89100 0.93572 0.95365 1.21067 0.80385 0.79966 0.91673 1.90730 1.52239 1.51836 1.46247 1.46170 1.36344 1.44402 1.10425 1.21675 0.98873 0.99568 0.80464 1.21890 0.95107 0.96430 1.02416 1.19036 0.96659 0.96876 0.88891 1.21231 1.17724 1.24763 0.92340 0.92564 1.25039 0.97105 0.96686 0.95685 1.69977 1.42079 1.43896 0.97310 0.86520 0.82118 0.81195 0.78063 1.19746 1.20980 1.20996 1.15747 0.81713 0.84230 0.77501 1.90996 1.75066 1.20322 1.54616 0.90876 0.89111 0.89354 0.85664 0.85568 0.86227 0.86112 0.76619 0.91710 0.91698 0.92653 0.92624 0.96275 0.96289 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.73 59.85 0.64 1.32 16 2 N -0.58 -5.88 3.00 -128.16 -0.39 -6.26 16 3 C 0.53 5.02 8.31 -10.56 -0.09 4.93 16 4 O -0.47 -5.56 17.75 5.59 0.10 -5.46 16 5 C 0.06 0.45 7.66 -4.31 -0.03 0.42 16 6 N -0.61 -5.79 2.51 -181.40 -0.45 -6.25 16 7 C 0.13 1.05 6.63 -5.19 -0.03 1.02 16 8 C 0.49 6.20 7.90 -10.98 -0.09 6.12 16 9 O -0.53 -9.35 16.43 5.56 0.09 -9.26 16 10 N -0.72 -8.94 5.56 -60.29 -0.33 -9.27 16 11 C 0.12 1.94 5.67 -4.04 -0.02 1.91 16 12 C -0.12 -2.24 5.27 -26.74 -0.14 -2.38 16 13 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 14 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 18 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C 0.71 8.52 8.31 -88.02 -0.73 7.79 16 23 O -0.54 -8.26 17.15 5.33 0.09 -8.17 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.72 7.86 -51.93 -0.41 0.31 16 26 H 0.09 0.59 8.00 -51.93 -0.42 0.17 16 27 H 0.13 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.12 0.85 8.03 -51.93 -0.42 0.43 16 31 H 0.40 3.59 8.47 -40.82 -0.35 3.24 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -37.40 336.40 -6.51 -43.91 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.36 Total: -3.04 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.04 Total: 8.40 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.44 Total: -47.65 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.28 Total: -22.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.40 -6.51 -43.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329992252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.792 kcal (2) G-P(sol) polarization free energy of solvation -37.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds