Wall clock time and date at job start Tue Mar 31 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 C 1.46503 * 126.68513 * 179.84385 * 6 5 3 8 8 C 1.50707 * 109.46690 * 269.98018 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99890 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00317 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47487 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47281 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47162 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99999 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99837 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46714 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47238 * 119.99716 * 18 16 14 21 21 H 1.48497 * 109.47290 * 240.00117 * 18 16 14 22 22 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 23 23 O 1.21540 * 123.76923 * 359.97080 * 22 2 1 24 24 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 27 27 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 28 28 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 29 29 H 1.08990 * 109.47656 * 29.97642 * 7 6 5 30 30 H 1.08996 * 109.47168 * 149.98340 * 7 6 5 31 31 H 0.97001 * 119.99796 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.46362 * 299.99850 * 11 10 8 33 33 H 1.08996 * 109.46868 * 59.99591 * 11 10 8 34 34 H 1.09006 * 109.47110 * 299.99906 * 12 11 10 35 35 H 1.09002 * 109.47077 * 59.99571 * 12 11 10 36 36 H 1.09000 * 109.47072 * 299.99543 * 13 12 11 37 37 H 1.09002 * 109.47452 * 59.99756 * 13 12 11 38 38 H 0.97005 * 119.99519 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8060 -0.0128 8 6 5.0040 -2.1323 -1.4356 9 8 4.4141 -1.6041 -2.3543 10 7 5.9946 -3.0109 -1.6872 11 6 6.3591 -3.3277 -3.0703 12 6 7.5033 -4.3433 -3.0764 13 6 7.8844 -4.6736 -4.5209 14 6 9.0110 -5.6745 -4.5269 15 1 9.4151 -6.0382 -3.5937 16 6 9.5266 -6.1250 -5.7236 17 7 9.0348 -5.6816 -6.8599 18 14 10.9236 -7.3650 -5.7311 19 1 11.2942 -7.7015 -4.3330 20 1 10.4889 -8.5961 -6.4384 21 1 12.0987 -6.7827 -6.4276 22 6 2.2166 -1.1068 -0.0056 23 8 1.7603 -2.2333 -0.0109 24 1 -0.3634 -0.0053 1.0276 25 1 -0.3633 -0.8873 -0.5184 26 1 -0.3633 0.8927 -0.5093 27 1 4.1790 0.9699 0.8983 28 1 4.1768 0.9794 -0.8945 29 1 5.4924 -1.3842 0.5024 30 1 4.3110 -2.7154 0.4967 31 1 6.4666 -3.4330 -0.9524 32 1 5.4961 -3.7490 -3.5860 33 1 6.6782 -2.4183 -3.5793 34 1 8.3662 -3.9216 -2.5608 35 1 7.1846 -5.2528 -2.5672 36 1 7.0217 -5.0952 -5.0369 37 1 8.2033 -3.7639 -5.0297 38 1 9.3978 -5.9983 -7.7019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329992252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:29 Heat of formation + Delta-G solvation = -109.012510 kcal Electronic energy + Delta-G solvation = -21529.121880 eV Core-core repulsion = 17985.468528 eV Total energy + Delta-G solvation = -3543.653352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.37484 -40.70896 -39.69301 -37.37080 -36.96558 -36.16359 -35.19192 -33.15501 -31.37175 -28.86546 -28.15120 -27.31023 -24.92106 -23.56364 -22.30687 -21.90549 -21.02240 -18.80966 -18.64362 -18.44368 -17.78227 -17.68528 -16.98911 -16.86345 -16.48167 -16.44325 -15.68913 -15.47809 -15.35639 -15.11258 -14.99137 -14.45553 -14.19568 -13.74675 -13.70221 -13.67685 -13.54691 -13.05315 -12.76000 -12.54012 -12.33727 -12.09641 -11.66171 -11.63844 -11.42359 -11.28233 -11.13695 -10.93709 -10.56194 -10.09834 -10.03055 -8.19599 -6.30998 0.52902 0.94926 1.42293 1.42623 1.55665 1.58994 1.79333 1.90270 2.35076 2.44435 3.00479 3.14602 3.67225 3.76416 4.17013 4.19187 4.24075 4.24917 4.35089 4.38038 4.39687 4.47213 4.56718 4.68756 4.80819 4.95862 5.00743 5.18670 5.22129 5.44109 5.54136 5.71655 5.85019 5.97276 6.22303 6.26244 6.57426 6.87513 6.91494 7.26040 7.39019 8.92801 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.045174 B = 0.002457 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.670722 B =11392.282238 C =11445.397473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.584 5.584 3 C 0.525 3.475 4 O -0.499 6.499 5 C 0.070 3.930 6 N -0.607 5.607 7 C 0.139 3.861 8 C 0.482 3.518 9 O -0.588 6.588 10 N -0.709 5.709 11 C 0.131 3.869 12 C -0.101 4.101 13 C 0.021 3.979 14 C -0.538 4.538 15 H 0.069 0.931 16 C -0.006 4.006 17 N -0.937 5.937 18 Si 0.967 3.033 19 H -0.256 1.256 20 H -0.282 1.282 21 H -0.280 1.280 22 C 0.698 3.302 23 O -0.580 6.580 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.174 0.826 28 H 0.131 0.869 29 H 0.178 0.822 30 H 0.136 0.864 31 H 0.421 0.579 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.067 0.933 36 H -0.012 1.012 37 H -0.008 1.008 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 12.337 21.509 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.329 5.329 3 C 0.314 3.686 4 O -0.372 6.372 5 C -0.054 4.054 6 N -0.343 5.343 7 C 0.015 3.985 8 C 0.268 3.732 9 O -0.468 6.468 10 N -0.362 5.362 11 C 0.006 3.994 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.576 4.576 15 H 0.087 0.913 16 C -0.203 4.203 17 N -0.578 5.578 18 Si 0.792 3.208 19 H -0.180 1.180 20 H -0.208 1.208 21 H -0.206 1.206 22 C 0.400 3.600 23 O -0.456 6.456 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.191 0.809 28 H 0.149 0.851 29 H 0.196 0.804 30 H 0.154 0.846 31 H 0.259 0.741 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.006 0.994 37 H 0.010 0.990 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.748 12.637 20.697 26.525 hybrid contribution 0.503 -0.886 -0.820 1.308 sum -10.245 11.750 19.877 25.261 Atomic orbital electron populations 1.22000 0.74135 1.04887 1.04826 1.46385 1.10511 1.07964 1.68045 1.21253 0.89926 0.84087 0.73287 1.90812 1.79869 1.18704 1.47774 1.22794 0.94310 0.79002 1.09278 1.47150 1.04123 1.07613 1.75435 1.21485 0.90506 0.94658 0.91834 1.22035 0.79130 0.78642 0.93418 1.90718 1.53902 1.53739 1.48450 1.45899 1.36665 1.44525 1.09098 1.21180 0.97127 0.98203 0.82867 1.21586 0.96441 0.97596 0.98239 1.18965 0.94997 0.95127 0.92554 1.21728 1.18090 1.24908 0.92869 0.91308 1.26047 1.00028 0.98898 0.95329 1.70126 1.43912 1.45635 0.98091 0.85360 0.78423 0.78205 0.78818 1.17976 1.20796 1.20608 1.16027 0.82737 0.83961 0.77293 1.90959 1.76012 1.21901 1.56737 0.89093 0.89870 0.88605 0.80880 0.85150 0.80445 0.84633 0.74148 0.94196 0.93084 0.90731 0.91399 0.99407 0.98955 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.73 127.77 1.37 2.62 16 2 N -0.58 -11.43 3.00 -796.64 -2.39 -13.83 16 3 C 0.52 9.27 8.31 87.94 0.73 10.00 16 4 O -0.50 -11.26 17.75 -2.92 -0.05 -11.31 16 5 C 0.07 0.77 7.66 85.76 0.66 1.43 16 6 N -0.61 -9.94 2.51 -846.24 -2.12 -12.06 16 7 C 0.14 1.68 6.63 85.63 0.57 2.25 16 8 C 0.48 11.38 7.90 87.66 0.69 12.08 16 9 O -0.59 -20.48 16.43 -3.04 -0.05 -20.53 16 10 N -0.71 -16.06 5.56 -463.06 -2.57 -18.64 16 11 C 0.13 4.32 5.67 86.38 0.49 4.81 16 12 C -0.10 -3.65 5.27 30.59 0.16 -3.49 16 13 C 0.02 1.08 4.97 29.85 0.15 1.23 16 14 C -0.54 -29.45 9.11 25.60 0.23 -29.22 16 15 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 16 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 17 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 18 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 C 0.70 16.17 8.31 179.44 1.49 17.66 16 23 O -0.58 -17.79 17.15 -3.84 -0.07 -17.85 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.38 7.86 -2.39 -0.02 1.36 16 26 H 0.10 1.28 8.00 -2.38 -0.02 1.26 16 27 H 0.17 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.18 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.14 1.38 8.03 -2.39 -0.02 1.36 16 31 H 0.42 6.03 8.47 -92.71 -0.79 5.24 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 37 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -85.23 336.40 2.35 -82.88 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 0.29 Total: 3.33 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 7.01 Total: 19.50 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -6.80 Total: -101.30 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.17 Total: -49.70 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -85.23 2.35 -82.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329992252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.134 kcal (2) G-P(sol) polarization free energy of solvation -85.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds