Wall clock time and date at job start Tue Mar 31 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48502 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46973 * 300.00063 * 3 2 1 6 6 H 1.48493 * 109.47191 * 59.99856 * 3 2 1 7 7 C 1.38955 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99626 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99852 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00193 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99892 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.46882 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99620 * 180.02562 * 13 12 10 15 15 O 1.21579 * 120.00041 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99637 * 179.97438 * 14 13 12 17 17 C 1.51694 * 127.61626 * 0.27692 * 16 14 13 18 18 C 1.54385 * 102.89617 * 219.46004 * 17 16 14 19 19 H 1.08997 * 117.61570 * 116.37998 * 18 17 16 20 20 C 1.53004 * 118.12185 * 271.95002 * 18 17 16 21 21 C 1.53000 * 60.49677 * 93.16147 * 20 18 17 22 22 C 1.53000 * 119.53956 * 111.73999 * 21 20 18 23 23 O 1.42905 * 109.46887 * 109.77017 * 22 21 20 24 24 C 1.48151 * 127.83564 * 179.97438 * 16 14 13 25 25 H 0.96999 * 120.00389 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99801 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.46712 * 60.00355 * 12 10 9 28 28 H 1.08998 * 109.46972 * 300.00320 * 12 10 9 29 29 H 0.96998 * 120.00150 * 0.02562 * 13 12 10 30 30 H 1.09006 * 111.96185 * 100.90059 * 17 16 14 31 31 H 1.08997 * 110.49107 * 337.32873 * 17 16 14 32 32 H 1.09002 * 117.44414 * 200.79009 * 20 18 17 33 33 H 1.09003 * 117.44322 * 345.53871 * 20 18 17 34 34 H 1.08996 * 109.47188 * 229.76967 * 22 21 20 35 35 H 1.09000 * 109.47141 * 349.77608 * 22 21 20 36 36 H 0.96699 * 113.99802 * 179.97438 * 23 22 21 37 37 H 1.08999 * 110.40580 * 21.63658 * 24 16 14 38 38 H 1.08993 * 110.50688 * 259.24971 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5579 -0.0010 12 6 1.2438 -4.8630 0.0000 13 7 2.1959 -5.9765 -0.0007 14 6 1.7466 -7.2472 -0.0009 15 8 0.5512 -7.4693 -0.0009 16 7 2.6224 -8.2715 -0.0021 17 6 4.1374 -8.1944 0.0025 18 6 4.5433 -9.3338 -0.9569 19 1 5.0639 -9.0603 -1.8746 20 6 4.7293 -10.7360 -0.3734 21 6 3.3721 -10.3360 -0.9555 22 6 2.8779 -10.9999 -2.2423 23 8 1.7818 -11.8659 -1.9409 24 6 2.3237 -9.7226 -0.0019 25 1 -0.4851 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.6169 -4.9209 -0.8898 28 1 0.6175 -4.9205 0.8902 29 1 3.1495 -5.7992 -0.0011 30 1 4.5515 -8.3682 0.9957 31 1 4.4717 -7.2327 -0.3867 32 1 5.3325 -11.4418 -0.9445 33 1 4.8051 -10.8231 0.7105 34 1 2.5524 -10.2329 -2.9450 35 1 3.6873 -11.5795 -2.6861 36 1 1.4168 -12.3212 -2.7119 37 1 1.3165 -9.9033 -0.3774 38 1 2.4344 -10.1351 1.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346658061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:47 Heat of formation + Delta-G solvation = -69.840949 kcal Electronic energy + Delta-G solvation = -21871.881005 eV Core-core repulsion = 18329.926260 eV Total energy + Delta-G solvation = -3541.954746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55955 -39.02835 -37.99481 -36.60664 -34.40512 -33.72004 -33.38015 -31.36161 -29.20335 -27.99371 -26.28152 -25.73496 -24.15421 -21.47925 -19.88099 -19.62881 -19.40741 -18.29720 -17.82494 -17.38825 -16.09114 -15.82216 -15.62802 -15.38629 -15.09985 -14.60786 -14.42590 -14.18742 -13.74806 -13.58028 -13.45011 -13.13634 -12.55663 -12.36227 -12.07565 -11.89339 -11.87674 -11.62451 -11.48263 -11.13812 -10.67608 -10.54114 -10.40449 -10.31670 -10.02175 -9.78738 -9.63896 -8.95300 -8.61420 -8.47316 -8.09007 -6.50531 -3.92516 2.61641 3.06951 3.10721 3.22813 3.29487 3.39079 3.76000 3.81418 4.01484 4.17471 4.27906 4.46114 4.50801 4.78518 4.81382 4.90979 5.02033 5.18279 5.23861 5.35290 5.38126 5.47848 5.66289 5.68321 5.81343 5.81986 5.94025 6.03054 6.06722 6.13961 6.78681 7.20811 7.32825 7.47016 7.93689 8.19175 8.46314 8.82676 9.05644 9.40750 9.88547 10.66490 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.038040 B = 0.002962 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.900186 B = 9452.392997 C = 9861.996572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.430 3.570 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.723 5.723 14 C 0.728 3.272 15 O -0.594 6.594 16 N -0.648 5.648 17 C 0.127 3.873 18 C -0.164 4.164 19 H 0.123 0.877 20 C -0.132 4.132 21 C -0.148 4.148 22 C 0.125 3.875 23 O -0.567 6.567 24 C 0.168 3.832 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.406 0.594 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.381 0.619 37 H 0.094 0.906 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 -20.476 -3.156 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.431 3.569 15 O -0.473 6.473 16 N -0.388 5.388 17 C 0.005 3.995 18 C -0.183 4.183 19 H 0.141 0.859 20 C -0.169 4.169 21 C -0.150 4.150 22 C 0.048 3.952 23 O -0.372 6.372 24 C 0.045 3.955 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.244 0.756 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.228 0.772 37 H 0.112 0.888 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.863 -20.073 -2.546 21.366 hybrid contribution 0.211 0.806 -0.686 1.079 sum 7.074 -19.267 -3.232 20.777 Atomic orbital electron populations 1.69622 1.06010 1.28408 1.49427 1.25328 0.95664 0.99925 0.96846 0.85759 0.79666 0.80844 0.77817 1.19146 1.20630 1.20616 1.19775 0.93468 0.81984 1.48130 0.87643 1.41796 1.09509 1.04442 1.62685 1.19755 0.88277 0.84995 0.85432 1.90483 1.13767 1.86884 1.57375 1.20797 0.91232 0.84815 1.03172 1.44773 1.11232 1.03104 1.78960 1.15265 0.84036 0.79841 0.77802 1.90911 1.13510 1.83826 1.59041 1.49121 1.05472 1.05302 1.78925 1.22471 0.79798 0.98338 0.98858 1.23721 1.01933 0.90266 1.02369 0.85949 1.23200 0.96342 0.95879 1.01483 1.22670 0.90089 1.02918 0.99280 1.21347 0.88598 0.91876 0.93423 1.86485 1.50315 1.62416 1.38007 1.21303 0.98837 0.77866 0.97476 0.91643 0.76999 0.90030 0.89971 0.75640 0.89993 0.89375 0.87761 0.88272 0.93075 0.93252 0.77226 0.88791 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.04 13.05 55.50 0.72 -23.32 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 10 C 0.43 10.03 7.85 -10.98 -0.09 9.95 16 11 O -0.60 -15.44 15.24 5.55 0.08 -15.36 16 12 C 0.13 2.49 6.15 -5.19 -0.03 2.45 16 13 N -0.72 -13.04 5.51 -66.41 -0.37 -13.40 16 14 C 0.73 13.11 8.58 -86.91 -0.75 12.36 16 15 O -0.59 -12.65 16.61 5.30 0.09 -12.56 16 16 N -0.65 -9.16 3.39 -171.95 -0.58 -9.75 16 17 C 0.13 1.34 6.95 -0.37 0.00 1.33 16 18 C -0.16 -1.40 6.93 -89.29 -0.62 -2.02 16 19 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 20 C -0.13 -0.94 9.81 -26.73 -0.26 -1.20 16 21 C -0.15 -1.42 2.74 -153.16 -0.42 -1.84 16 22 C 0.13 1.06 7.34 37.16 0.27 1.33 16 23 O -0.57 -5.13 13.06 -35.23 -0.46 -5.59 16 24 C 0.17 2.10 6.51 -2.39 -0.02 2.08 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.40 9.58 7.90 -40.82 -0.32 9.26 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.41 7.09 5.87 -40.82 -0.24 6.85 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.94 6.95 -51.93 -0.36 0.58 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.31 8.04 -51.93 -0.42 -0.10 16 36 H 0.38 1.68 9.12 45.56 0.42 2.09 16 37 H 0.09 1.37 7.40 -51.93 -0.38 0.99 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -33.89 326.95 -7.02 -40.91 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -4.20 Total: 15.84 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: -2.15 Total: 16.56 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.28 Total: -60.31 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.29 Total: -33.51 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.89 -7.02 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346658061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.930 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds