Wall clock time and date at job start Tue Mar 31 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47437 * 111.00194 * 69.87659 * 13 12 10 15 15 C 1.54312 * 107.23798 * 123.25690 * 14 13 12 16 16 C 1.55139 * 103.02051 * 22.28166 * 15 14 13 17 17 H 1.09000 * 110.99032 * 82.43945 * 16 15 14 18 18 N 1.46500 * 110.99388 * 206.22078 * 16 15 14 19 19 C 1.47092 * 125.55984 * 238.26392 * 18 16 15 20 20 C 1.54090 * 103.77737 * 179.97438 * 19 18 16 21 21 O 1.45699 * 104.00579 * 0.32085 * 20 19 18 22 22 C 1.33771 * 109.47917 * 359.79308 * 21 20 19 23 23 O 1.21512 * 123.07130 * 180.02562 * 22 21 20 24 24 C 1.47850 * 111.00018 * 190.71587 * 13 12 10 25 25 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 28 28 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 29 29 H 1.09004 * 109.88860 * 242.66284 * 14 13 12 30 30 H 1.09004 * 109.89405 * 3.84359 * 14 13 12 31 31 H 1.09006 * 110.71124 * 140.66591 * 15 14 13 32 32 H 1.09008 * 110.70631 * 263.72688 * 15 14 13 33 33 H 1.09002 * 110.56182 * 298.61145 * 19 18 16 34 34 H 1.08995 * 110.56643 * 61.45838 * 19 18 16 35 35 H 1.09001 * 110.70161 * 241.60343 * 20 19 18 36 36 H 1.09000 * 110.34064 * 118.86450 * 20 19 18 37 37 H 1.09002 * 110.36779 * 332.46523 * 24 13 12 38 38 H 1.09003 * 110.37230 * 94.80093 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.9072 -6.0762 1.2845 15 6 2.6628 -7.4968 1.8354 16 6 2.3033 -8.3081 0.5629 17 1 3.2026 -8.6222 0.0330 18 7 1.4638 -9.4617 0.8957 19 6 1.7893 -10.8674 0.6099 20 6 0.5799 -11.6443 1.1650 21 8 -0.2946 -10.6053 1.6926 22 6 0.2710 -9.4078 1.5039 23 8 -0.2490 -8.3665 1.8528 24 6 1.5104 -7.2630 -0.2608 25 1 -0.4850 0.8401 -0.0004 26 1 0.3532 -2.3906 0.0016 27 1 0.6209 -4.9225 0.8949 28 1 0.6128 -4.9187 -0.8850 29 1 3.9747 -5.9157 1.1334 30 1 2.5137 -5.3356 1.9808 31 1 3.5664 -7.8904 2.3009 32 1 1.8341 -7.4983 2.5436 33 1 1.8880 -11.0268 -0.4639 34 1 2.7025 -11.1617 1.1271 35 1 0.8897 -12.3230 1.9597 36 1 0.0824 -12.1927 0.3651 37 1 0.4767 -7.2146 0.0818 38 1 1.5481 -7.5083 -1.3222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347128309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:02 Heat of formation + Delta-G solvation = -83.481148 kcal Electronic energy + Delta-G solvation = -22506.190121 eV Core-core repulsion = 18963.643891 eV Total energy + Delta-G solvation = -3542.546229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.85149 -39.17335 -37.71382 -37.10540 -35.27159 -33.78935 -31.61163 -31.04926 -29.82308 -28.40694 -26.56458 -24.25648 -24.00672 -22.82558 -20.97849 -20.34326 -19.01757 -17.84768 -17.54492 -17.47691 -16.80807 -16.06074 -15.82509 -14.98188 -14.79815 -14.48102 -14.42248 -14.06636 -13.87739 -13.79886 -13.34239 -13.13655 -13.03331 -12.74405 -12.13894 -11.82159 -11.68011 -11.49701 -11.41309 -11.28840 -11.00145 -10.96637 -10.69533 -10.39037 -10.30162 -10.14344 -9.41703 -9.14168 -8.36727 -7.89042 -7.82898 -6.33926 -3.74668 2.12790 2.53477 3.15331 3.25111 3.30101 3.34619 3.75810 4.00240 4.13664 4.20947 4.29632 4.34863 4.57796 4.73133 4.80862 4.92763 5.05362 5.15447 5.23233 5.32413 5.34412 5.54494 5.74952 5.79366 5.91522 5.97465 5.99795 6.15776 6.29028 6.39163 6.48929 7.12202 7.28273 7.28617 7.61881 7.83940 8.13846 8.70448 9.25765 9.63344 10.15576 10.84003 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.043853 B = 0.003232 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.337768 B = 8661.590008 C = 9003.050556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.578 6.578 12 C 0.041 3.959 13 N -0.500 5.500 14 C 0.061 3.939 15 C -0.158 4.158 16 C 0.168 3.832 17 H 0.113 0.887 18 N -0.624 5.624 19 C 0.065 3.935 20 C 0.041 3.959 21 O -0.331 6.331 22 C 0.640 3.360 23 O -0.511 6.511 24 C 0.026 3.974 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 -24.588 0.940 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.462 6.462 12 C -0.090 4.090 13 N -0.224 5.224 14 C -0.067 4.067 15 C -0.197 4.197 16 C 0.066 3.934 17 H 0.131 0.869 18 N -0.371 5.371 19 C -0.059 4.059 20 C -0.034 4.034 21 O -0.242 6.242 22 C 0.394 3.606 23 O -0.395 6.395 24 C -0.103 4.103 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.432 -23.805 0.830 23.944 hybrid contribution -0.735 0.541 0.524 1.052 sum 1.697 -23.264 1.354 23.365 Atomic orbital electron populations 1.69613 1.05920 1.28157 1.50757 1.25254 0.95619 0.99655 0.97490 0.85924 0.78735 0.80570 0.79003 1.19933 1.21031 1.19973 1.19641 0.93294 0.82261 1.47558 0.88013 1.41853 1.09199 1.04549 1.64734 1.19735 0.88393 0.84502 0.84243 1.90504 1.13623 1.87064 1.54996 1.22079 0.93946 0.91241 1.01773 1.63289 1.25939 1.01100 1.32047 1.22656 1.00825 0.93906 0.89317 1.23266 1.02433 0.96524 0.97479 1.22078 0.92171 0.82837 0.96303 0.86909 1.48079 1.20178 1.07180 1.61698 1.22828 0.99055 0.81072 1.02906 1.24275 0.88980 0.89856 1.00284 1.87301 1.44555 1.16321 1.75991 1.18543 0.80453 0.83732 0.77886 1.91077 1.66711 1.26673 1.55037 1.23423 0.98073 0.88852 0.99930 0.91885 0.77486 0.92898 0.89499 0.89637 0.92222 0.90555 0.90191 0.88869 0.88964 0.87669 0.87665 0.91586 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 13.05 55.50 0.72 -24.67 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.56 9.68 -14.93 -0.14 -8.71 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 9 N -0.57 -15.01 5.29 -10.96 -0.06 -15.07 16 10 C 0.45 11.05 7.43 -10.98 -0.08 10.97 16 11 O -0.58 -16.04 15.12 5.54 0.08 -15.95 16 12 C 0.04 0.81 5.03 -4.98 -0.03 0.79 16 13 N -0.50 -8.83 4.85 -232.69 -1.13 -9.96 16 14 C 0.06 1.02 5.65 -2.84 -0.02 1.00 16 15 C -0.16 -2.05 6.46 -24.91 -0.16 -2.21 16 16 C 0.17 1.90 3.77 -65.79 -0.25 1.65 16 17 H 0.11 1.02 8.13 -51.93 -0.42 0.59 16 18 N -0.62 -6.23 2.99 -168.80 -0.51 -6.73 16 19 C 0.06 0.31 7.69 -3.15 -0.02 0.29 16 20 C 0.04 0.19 8.23 37.73 0.31 0.50 16 21 O -0.33 -3.62 11.09 -37.83 -0.42 -4.04 16 22 C 0.64 8.49 8.16 53.71 0.44 8.93 16 23 O -0.51 -9.04 14.79 -19.12 -0.28 -9.32 16 24 C 0.03 0.37 6.19 -2.30 -0.01 0.36 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.39 10.04 7.90 -40.82 -0.32 9.72 16 27 H 0.05 1.02 7.96 -51.93 -0.41 0.61 16 28 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.06 1.12 7.31 -51.93 -0.38 0.74 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.20 6.63 -51.92 -0.34 0.86 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 1.06 5.87 -51.93 -0.30 0.76 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -35.82 316.18 -6.98 -42.81 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.08 Total: 7.54 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -0.06 Total: 14.06 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.97 Total: -56.43 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.62 Total: -29.32 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.82 -6.98 -42.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347128309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.676 kcal (2) G-P(sol) polarization free energy of solvation -35.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds