Wall clock time and date at job start Tue Mar 31 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47147 * 2 1 4 4 C 1.50704 * 109.46863 * 240.00351 * 2 1 3 5 5 H 1.08006 * 119.99544 * 239.99669 * 4 2 1 6 6 C 1.37874 * 120.00221 * 60.00123 * 4 2 1 7 7 N 1.31512 * 119.99945 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00064 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47096 * 89.99755 * 8 6 4 10 10 H 1.48500 * 109.47338 * 210.00034 * 8 6 4 11 11 H 1.48507 * 109.46846 * 329.99633 * 8 6 4 12 12 N 1.46496 * 109.46984 * 120.00493 * 2 1 3 13 13 C 1.34777 * 119.99613 * 274.99541 * 12 2 1 14 14 O 1.21610 * 120.00238 * 0.02562 * 13 12 2 15 15 C 1.47436 * 119.99895 * 180.02562 * 13 12 2 16 16 C 1.41290 * 126.41352 * 0.02562 * 15 13 12 17 17 N 1.30446 * 108.02246 * 179.97438 * 16 15 13 18 18 N 1.39938 * 108.89685 * 0.02562 * 17 16 15 19 19 C 1.46502 * 125.75323 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.46767 * 304.96968 * 19 18 17 21 21 H 1.08997 * 109.47058 * 305.00256 * 20 19 18 22 22 O 1.42897 * 109.46810 * 65.00464 * 20 19 18 23 23 C 1.53000 * 109.46739 * 185.00196 * 20 19 18 24 24 O 1.42903 * 109.47113 * 175.00440 * 23 20 19 25 25 C 1.34264 * 108.49048 * 359.76296 * 18 17 16 26 26 H 1.08998 * 109.47107 * 299.99651 * 1 2 3 27 27 H 1.09002 * 109.47097 * 59.99895 * 1 2 3 28 28 H 1.09005 * 109.46965 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99790 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00516 * 95.00526 * 12 2 1 31 31 H 1.07996 * 125.98639 * 359.94831 * 16 15 13 32 32 H 1.08994 * 109.47375 * 64.97547 * 19 18 17 33 33 H 1.08999 * 109.46834 * 184.97587 * 19 18 17 34 34 H 0.96705 * 114.00394 * 60.00081 * 22 20 19 35 35 H 1.09000 * 109.47411 * 295.00228 * 23 20 19 36 36 H 1.08999 * 109.47557 * 55.00647 * 23 20 19 37 37 H 0.96699 * 114.00110 * 180.02562 * 24 23 20 38 38 H 1.07997 * 126.28946 * 180.24522 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1121 11 1 3.6309 -1.7564 -3.7120 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1615 2.4118 15 6 2.6390 -0.7133 3.5607 16 6 3.0130 -2.0728 3.6503 17 7 3.3925 -2.3071 4.8761 18 7 3.2806 -1.1263 5.6187 19 6 3.6108 -0.9730 7.0378 20 6 2.8317 -2.0040 7.8569 21 1 1.7669 -1.9066 7.6454 22 8 3.2685 -3.3189 7.5070 23 6 3.0796 -1.7640 9.3474 24 8 2.2629 -2.6504 10.1151 25 6 2.8251 -0.1562 4.8099 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7082 1.1610 -3.4844 30 1 2.2491 -1.6318 1.1525 31 1 2.9884 -2.7921 2.8450 32 1 4.6801 -1.1281 7.1808 33 1 3.3420 0.0307 7.3669 34 1 4.2086 -3.4772 7.6691 35 1 4.1295 -1.9482 9.5754 36 1 2.8294 -0.7326 9.5960 37 1 2.3682 -2.5533 11.0714 38 1 2.6372 0.8707 5.0864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350612924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:04 Heat of formation + Delta-G solvation = -60.081882 kcal Electronic energy + Delta-G solvation = -21689.554452 eV Core-core repulsion = 18148.022891 eV Total energy + Delta-G solvation = -3541.531561 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23278 -38.71159 -38.17802 -36.27239 -34.66348 -33.56575 -32.24945 -30.39963 -30.10522 -28.53680 -26.11745 -25.18186 -22.78957 -22.50814 -20.93889 -20.39790 -19.25346 -18.25559 -17.62615 -17.03089 -16.55247 -16.17169 -15.42116 -15.20958 -15.07453 -14.48342 -14.25608 -14.10032 -13.92525 -13.48773 -13.10010 -12.98163 -12.71669 -12.42492 -12.25764 -11.62244 -11.45222 -11.05823 -10.91193 -10.84365 -10.70609 -10.63993 -10.43233 -10.25305 -10.16806 -9.45618 -8.99786 -8.96468 -8.51904 -8.47350 -7.76088 -6.06422 -4.15100 1.72556 2.24282 2.49644 3.28852 3.35417 3.37980 3.42836 3.92949 4.18669 4.21819 4.36095 4.39409 4.47120 4.56058 4.60025 4.74467 4.84264 4.90249 5.03764 5.25971 5.46634 5.55029 5.60800 6.08387 6.56924 6.83820 6.92142 7.06356 7.07327 7.23866 7.34937 7.56229 7.63977 7.68355 7.79047 8.00505 8.22422 8.78760 8.87131 9.26177 9.52872 10.99651 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.040587 B = 0.002918 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.703025 B = 9594.189931 C = 9922.011019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.578 3.422 14 O -0.566 6.566 15 C -0.273 4.273 16 C 0.074 3.926 17 N -0.277 5.277 18 N -0.368 5.368 19 C 0.104 3.896 20 C 0.098 3.902 21 H 0.110 0.890 22 O -0.528 6.528 23 C 0.047 3.953 24 O -0.561 6.561 25 C 0.109 3.891 26 H 0.015 0.985 27 H 0.089 0.911 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.189 0.811 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.371 0.629 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.381 0.619 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -4.379 23.424 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.350 5.350 13 C 0.364 3.636 14 O -0.447 6.447 15 C -0.288 4.288 16 C -0.114 4.114 17 N -0.096 5.096 18 N -0.148 5.148 19 C -0.019 4.019 20 C 0.037 3.963 21 H 0.128 0.872 22 O -0.332 6.332 23 C -0.032 4.032 24 O -0.366 6.366 25 C -0.040 4.040 26 H 0.034 0.966 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.206 0.794 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.217 0.783 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.228 0.772 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.834 -4.532 23.465 24.601 hybrid contribution 0.869 0.124 -0.693 1.119 sum 6.704 -4.407 22.772 24.144 Atomic orbital electron populations 1.22082 0.98514 0.99131 1.00848 1.18727 0.90987 0.93979 0.79910 0.93344 1.21239 1.32271 1.13146 0.90343 0.92044 1.24886 0.94885 0.94961 0.99031 1.69909 1.36009 1.22500 1.23778 0.86454 0.79178 0.79253 0.82238 1.20572 1.21141 1.19856 1.46313 1.65036 1.13431 1.10235 1.17266 0.77892 0.86092 0.82366 1.90712 1.52831 1.15802 1.85367 1.20657 1.17343 0.94959 0.95805 1.24185 0.96731 0.95529 0.94950 1.77287 1.24045 1.04054 1.04189 1.48205 1.50651 1.07379 1.08581 1.22325 1.01226 1.01439 0.76894 1.22148 1.00455 0.83523 0.90151 0.87235 1.86787 1.29809 1.28974 1.87624 1.22822 0.94471 0.93585 0.92358 1.86573 1.66383 1.61859 1.21779 1.22921 0.95856 0.95190 0.90046 0.96619 0.89210 0.95469 0.92648 0.78019 0.79382 0.89036 0.87393 0.78251 0.92905 0.92439 0.77208 0.79879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 2 C 0.27 6.94 2.56 -69.08 -0.18 6.76 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.24 11.32 55.43 0.63 -24.62 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.70 -15.31 5.06 -56.01 -0.28 -15.59 16 13 C 0.58 12.27 7.78 -12.51 -0.10 12.18 16 14 O -0.57 -14.01 16.56 5.27 0.09 -13.92 16 15 C -0.27 -4.58 6.13 -105.07 -0.64 -5.23 16 16 C 0.07 1.11 11.50 -16.98 -0.20 0.91 16 17 N -0.28 -3.98 11.46 30.86 0.35 -3.63 16 18 N -0.37 -4.41 3.65 -60.81 -0.22 -4.63 16 19 C 0.10 0.72 6.16 -4.04 -0.02 0.70 16 20 C 0.10 0.79 3.46 -26.73 -0.09 0.69 16 21 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 22 O -0.53 -5.53 12.32 -40.08 -0.49 -6.02 16 23 C 0.05 0.24 6.68 37.16 0.25 0.49 16 24 O -0.56 -4.12 13.62 -40.08 -0.55 -4.67 16 25 C 0.11 1.50 11.25 -16.56 -0.19 1.31 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 30 H 0.39 7.30 7.49 -40.82 -0.31 6.99 16 31 H 0.19 2.36 7.50 -52.49 -0.39 1.96 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.11 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.37 2.51 9.05 45.56 0.41 2.92 16 35 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.38 0.93 9.12 45.56 0.42 1.34 16 38 H 0.18 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -37.05 331.49 -5.22 -42.27 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.50 Total: 8.46 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.22 Total: 1.46 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.48 Total: -48.46 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.95 Total: -24.61 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.05 -5.22 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350612924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.810 kcal (2) G-P(sol) polarization free energy of solvation -37.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds