Wall clock time and date at job start Tue Mar 31 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47147 * 2 1 4 4 C 1.50704 * 109.46863 * 240.00351 * 2 1 3 5 5 H 1.08006 * 119.99544 * 239.99669 * 4 2 1 6 6 C 1.37874 * 120.00221 * 60.00123 * 4 2 1 7 7 N 1.31512 * 119.99945 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00064 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47096 * 89.99755 * 8 6 4 10 10 H 1.48500 * 109.47338 * 210.00034 * 8 6 4 11 11 H 1.48507 * 109.46846 * 329.99633 * 8 6 4 12 12 N 1.46496 * 109.46984 * 120.00493 * 2 1 3 13 13 C 1.34777 * 119.99613 * 274.99541 * 12 2 1 14 14 O 1.21610 * 120.00238 * 0.02562 * 13 12 2 15 15 C 1.47436 * 119.99895 * 180.02562 * 13 12 2 16 16 C 1.41290 * 126.41352 * 0.02562 * 15 13 12 17 17 N 1.30446 * 108.02246 * 179.97438 * 16 15 13 18 18 N 1.39938 * 108.89685 * 0.02562 * 17 16 15 19 19 C 1.46502 * 125.75323 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.46767 * 304.96968 * 19 18 17 21 21 H 1.08997 * 109.47058 * 305.00256 * 20 19 18 22 22 O 1.42897 * 109.46810 * 65.00464 * 20 19 18 23 23 C 1.53000 * 109.46739 * 185.00196 * 20 19 18 24 24 O 1.42903 * 109.47113 * 175.00440 * 23 20 19 25 25 C 1.34264 * 108.49048 * 359.76296 * 18 17 16 26 26 H 1.08998 * 109.47107 * 299.99651 * 1 2 3 27 27 H 1.09002 * 109.47097 * 59.99895 * 1 2 3 28 28 H 1.09005 * 109.46965 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99790 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00516 * 95.00526 * 12 2 1 31 31 H 1.07996 * 125.98639 * 359.94831 * 16 15 13 32 32 H 1.08994 * 109.47375 * 64.97547 * 19 18 17 33 33 H 1.08999 * 109.46834 * 184.97587 * 19 18 17 34 34 H 0.96705 * 114.00394 * 60.00081 * 22 20 19 35 35 H 1.09000 * 109.47411 * 295.00228 * 23 20 19 36 36 H 1.08999 * 109.47557 * 55.00647 * 23 20 19 37 37 H 0.96699 * 114.00110 * 180.02562 * 24 23 20 38 38 H 1.07997 * 126.28946 * 180.24522 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1121 11 1 3.6309 -1.7564 -3.7120 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1615 2.4118 15 6 2.6390 -0.7133 3.5607 16 6 3.0130 -2.0728 3.6503 17 7 3.3925 -2.3071 4.8761 18 7 3.2806 -1.1263 5.6187 19 6 3.6108 -0.9730 7.0378 20 6 2.8317 -2.0040 7.8569 21 1 1.7669 -1.9066 7.6454 22 8 3.2685 -3.3189 7.5070 23 6 3.0796 -1.7640 9.3474 24 8 2.2629 -2.6504 10.1151 25 6 2.8251 -0.1562 4.8099 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7082 1.1610 -3.4844 30 1 2.2491 -1.6318 1.1525 31 1 2.9884 -2.7921 2.8450 32 1 4.6801 -1.1281 7.1808 33 1 3.3420 0.0307 7.3669 34 1 4.2086 -3.4772 7.6691 35 1 4.1295 -1.9482 9.5754 36 1 2.8294 -0.7326 9.5960 37 1 2.3682 -2.5533 11.0714 38 1 2.6372 0.8707 5.0864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350612924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:03 Heat of formation + Delta-G solvation = -93.001558 kcal Electronic energy + Delta-G solvation = -21690.981956 eV Core-core repulsion = 18148.022891 eV Total energy + Delta-G solvation = -3542.959065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.32766 -40.07935 -39.10800 -36.82417 -36.62327 -34.57013 -34.08957 -31.58133 -31.23459 -30.10247 -27.31807 -26.85475 -24.26864 -23.16790 -22.31141 -21.68651 -20.87425 -19.47660 -18.42245 -17.97797 -17.57989 -17.12485 -16.98537 -16.67856 -16.24888 -15.92334 -15.48897 -15.28561 -14.81634 -14.61608 -14.41901 -14.35294 -13.75385 -13.68255 -13.60878 -13.14370 -12.97023 -12.82124 -12.69361 -12.26463 -12.19419 -12.09759 -11.85147 -11.20426 -11.06520 -10.96464 -10.72887 -10.54834 -10.44586 -9.86977 -9.46894 -8.14537 -6.31617 0.58831 1.25201 1.37795 1.47173 1.47879 1.58574 2.39731 2.63466 2.76384 2.95574 3.15952 3.44792 3.68348 3.80708 3.91343 4.01808 4.13976 4.22236 4.23849 4.37800 4.52730 4.55970 4.74539 4.86394 4.93122 4.97488 5.13665 5.41927 5.49210 5.65834 5.74513 5.88788 5.96196 6.13657 6.56912 6.76183 6.83076 6.90468 7.06467 7.35767 7.62757 8.92043 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.040587 B = 0.002918 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.703025 B = 9594.189931 C = 9922.011019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.702 5.702 13 C 0.578 3.422 14 O -0.610 6.610 15 C -0.309 4.309 16 C 0.074 3.926 17 N -0.289 5.289 18 N -0.354 5.354 19 C 0.095 3.905 20 C 0.097 3.903 21 H 0.079 0.921 22 O -0.560 6.560 23 C 0.051 3.949 24 O -0.594 6.594 25 C 0.127 3.873 26 H 0.011 0.989 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.402 0.598 31 H 0.204 0.796 32 H 0.119 0.881 33 H 0.145 0.855 34 H 0.384 0.616 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.954 -5.378 25.037 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.018 0.982 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.349 5.349 13 C 0.367 3.633 14 O -0.494 6.494 15 C -0.324 4.324 16 C -0.114 4.114 17 N -0.108 5.108 18 N -0.133 5.133 19 C -0.025 4.025 20 C 0.036 3.964 21 H 0.097 0.903 22 O -0.367 6.367 23 C -0.027 4.027 24 O -0.403 6.403 25 C -0.025 4.025 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.220 0.780 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.233 0.767 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.250 0.750 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.347 -5.583 25.149 26.788 hybrid contribution 0.426 0.461 -1.014 1.193 sum 7.773 -5.122 24.135 25.868 Atomic orbital electron populations 1.21908 0.98393 0.99402 0.99563 1.18337 0.91053 0.91952 0.81764 0.98225 1.21555 1.32523 1.13528 0.90797 0.90873 1.25807 0.94921 0.95597 1.02313 1.70057 1.37056 1.23951 1.24571 0.85326 0.78965 0.78011 0.77906 1.19667 1.21179 1.18844 1.46053 1.65329 1.14055 1.09490 1.17820 0.76733 0.85629 0.83161 1.90674 1.54805 1.17801 1.86138 1.20305 1.20846 0.96052 0.95197 1.24398 0.96364 0.94997 0.95670 1.77264 1.24245 1.05308 1.04024 1.48595 1.48524 1.06105 1.10073 1.22839 1.02772 1.03215 0.73675 1.22142 0.98808 0.82898 0.92533 0.90333 1.86733 1.31228 1.30545 1.88152 1.22830 0.95566 0.94475 0.89863 1.86509 1.67286 1.62846 1.23682 1.23239 0.93771 0.96235 0.89257 0.96940 0.91362 0.94224 0.92557 0.76267 0.77963 0.86291 0.83698 0.76673 0.90384 0.89950 0.74977 0.77584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.05 9.26 71.98 0.67 -6.38 16 2 C 0.27 14.67 2.56 44.25 0.11 14.78 16 3 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 4 C -0.55 -29.63 8.73 25.60 0.22 -29.41 16 5 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 8 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 12 N -0.70 -31.10 5.06 -449.35 -2.27 -33.37 16 13 C 0.58 25.01 7.78 86.67 0.67 25.69 16 14 O -0.61 -31.18 16.56 -4.06 -0.07 -31.25 16 15 C -0.31 -10.22 6.13 -20.15 -0.12 -10.34 16 16 C 0.07 2.12 11.50 85.65 0.99 3.11 16 17 N -0.29 -7.84 11.46 -56.28 -0.64 -8.48 16 18 N -0.35 -7.62 3.65 -346.30 -1.26 -8.88 16 19 C 0.09 0.98 6.16 86.38 0.53 1.51 16 20 C 0.10 1.33 3.46 30.60 0.11 1.44 16 21 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 22 O -0.56 -10.87 12.32 -144.34 -1.78 -12.65 16 23 C 0.05 0.36 6.68 71.98 0.48 0.84 16 24 O -0.59 -7.57 13.62 -144.34 -1.97 -9.54 16 25 C 0.13 3.25 11.25 84.27 0.95 4.20 16 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 28 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.40 15.17 7.49 -92.71 -0.69 14.48 16 31 H 0.20 4.89 7.50 -2.91 -0.02 4.87 16 32 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.15 0.47 8.06 -2.39 -0.02 0.45 16 34 H 0.38 4.46 9.05 -74.05 -0.67 3.79 16 35 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.40 1.11 9.12 -74.06 -0.68 0.43 16 38 H 0.21 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -82.85 331.49 -1.60 -84.45 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.93 Total: 21.64 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.06 Total: 6.62 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -3.94 Total: -104.01 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -3.81 Total: -53.43 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -82.85 -1.60 -84.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350612924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.556 kcal (2) G-P(sol) polarization free energy of solvation -82.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds