Wall clock time and date at job start Tue Mar 31 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46944 * 2 1 4 4 N 1.29935 * 125.37537 * 90.34475 * 3 2 1 5 5 C 1.36068 * 108.47425 * 180.16212 * 4 3 2 6 6 C 1.47424 * 126.45078 * 179.81969 * 5 4 3 7 7 O 1.21607 * 120.00291 * 179.69368 * 6 5 4 8 8 N 1.34779 * 119.99787 * 359.69789 * 6 5 4 9 9 C 1.46494 * 119.99921 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47283 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47269 * 305.00317 * 10 9 8 12 12 O 1.42903 * 109.46459 * 65.00211 * 10 9 8 13 13 C 1.53001 * 109.47376 * 185.00021 * 10 9 8 14 14 N 1.46497 * 109.46900 * 180.02562 * 13 10 9 15 15 C 1.36940 * 119.99699 * 180.02562 * 14 13 10 16 16 H 1.08003 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47344 * 90.00426 * 19 17 15 21 21 H 1.48507 * 109.46989 * 209.99999 * 19 17 15 22 22 H 1.48500 * 109.47285 * 330.00003 * 19 17 15 23 23 C 1.36089 * 107.10273 * 359.56538 * 5 4 3 24 24 O 1.34049 * 125.37817 * 270.02141 * 3 2 1 25 25 H 1.08995 * 109.47852 * 299.99812 * 1 2 3 26 26 H 1.08996 * 109.47392 * 60.00332 * 1 2 3 27 27 H 1.09005 * 109.46777 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47177 * 240.00158 * 2 1 3 29 29 H 1.09004 * 109.47402 * 120.00038 * 2 1 3 30 30 H 0.96999 * 119.99691 * 359.97438 * 8 6 5 31 31 H 1.09005 * 109.47040 * 60.00167 * 9 8 6 32 32 H 1.08999 * 109.47079 * 299.99869 * 9 8 6 33 33 H 0.96700 * 114.00311 * 60.00313 * 12 10 9 34 34 H 1.08999 * 109.47164 * 300.00361 * 13 10 9 35 35 H 1.08997 * 109.47124 * 60.00063 * 13 10 9 36 36 H 0.96996 * 120.00310 * 359.97438 * 14 13 10 37 37 H 0.97001 * 119.99921 * 180.02562 * 18 17 15 38 38 H 1.08005 * 126.52973 * 180.27638 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2890 2.1279 1.0594 5 6 2.7172 3.3574 0.6639 6 6 3.1117 4.4725 1.5439 7 8 3.4837 5.5252 1.0619 8 7 3.0602 4.3251 2.8826 9 6 3.4527 5.4329 3.7571 10 6 3.3020 5.0070 5.2189 11 1 2.2847 4.6560 5.3920 12 8 4.2245 3.9539 5.5055 13 6 3.5917 6.2010 6.1306 14 7 3.4480 5.7929 7.5302 15 6 3.6596 6.7008 8.5333 16 1 3.9320 7.7178 8.2925 17 6 3.5229 6.3142 9.8595 18 7 3.1893 5.0752 10.1528 19 14 3.8108 7.5529 11.2277 20 1 2.5333 8.2358 11.5542 21 1 4.3183 6.8496 12.4333 22 1 4.8099 8.5578 10.7836 23 6 2.7183 3.3621 -0.6970 24 8 2.2905 2.1527 -1.0930 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.7632 3.4855 3.2670 31 1 2.8132 6.2939 3.5621 32 1 4.4912 5.6999 3.5613 33 1 5.1513 4.1959 5.3730 34 1 4.6090 6.5520 5.9574 35 1 2.8882 7.0043 5.9118 36 1 3.2022 4.8798 7.7464 37 1 3.0934 4.8052 11.0795 38 1 3.0083 4.1825 -1.3368 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496967650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:12 Heat of formation + Delta-G solvation = -61.730967 kcal Electronic energy + Delta-G solvation = -21324.128516 eV Core-core repulsion = 17782.525445 eV Total energy + Delta-G solvation = -3541.603071 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.74589 -39.65353 -37.59717 -35.36859 -34.41829 -34.26149 -33.94896 -31.29361 -29.97172 -29.05234 -25.87810 -24.79567 -23.92566 -22.46205 -21.43336 -21.40853 -20.41723 -18.44387 -17.18748 -17.13444 -16.82566 -16.39060 -15.95843 -15.47857 -15.03399 -14.85665 -14.64425 -14.45453 -14.00762 -13.63202 -13.55354 -13.13794 -12.97750 -12.70323 -12.33696 -12.24643 -11.86671 -11.68002 -11.51433 -11.12249 -10.94980 -10.81534 -10.62191 -10.39684 -10.15955 -9.80386 -9.50415 -9.38896 -9.07914 -8.89420 -6.92994 -5.75070 -3.04882 0.82508 1.71872 2.23116 2.96929 3.14519 3.44415 3.49150 3.51205 3.53299 4.40535 4.47375 4.56195 4.65614 4.68335 4.75448 4.86968 4.91004 5.24750 5.25093 5.26010 5.32883 5.48364 5.56354 5.62109 5.64089 5.74039 5.83571 5.95941 6.20187 6.34780 6.51459 6.68587 7.11566 7.48095 7.69235 7.96660 8.06262 8.43086 9.54690 10.11464 10.47463 11.47254 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.002699 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.554876 B =10373.212252 C =11071.363188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.198 3.802 4 N -0.457 5.457 5 C -0.069 4.069 6 C 0.599 3.401 7 O -0.542 6.542 8 N -0.701 5.701 9 C 0.089 3.911 10 C 0.089 3.911 11 H 0.105 0.895 12 O -0.551 6.551 13 C 0.127 3.873 14 N -0.726 5.726 15 C -0.244 4.244 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.009 3.991 24 O -0.197 6.197 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.414 0.586 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.373 0.627 34 H 0.023 0.977 35 H 0.029 0.971 36 H 0.389 0.611 37 H 0.255 0.745 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 -9.803 -24.639 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.011 4.011 4 N -0.187 5.187 5 C -0.189 4.189 6 C 0.384 3.616 7 O -0.420 6.420 8 N -0.351 5.351 9 C -0.035 4.035 10 C 0.029 3.971 11 H 0.123 0.877 12 O -0.355 6.355 13 C -0.002 4.002 14 N -0.371 5.371 15 C -0.375 4.375 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.064 4.064 24 O -0.083 6.083 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.250 0.750 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.220 0.780 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.224 0.776 37 H 0.065 0.935 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.500 -9.440 -24.102 26.120 hybrid contribution 0.551 0.736 0.240 0.951 sum -2.948 -8.704 -23.862 25.570 Atomic orbital electron populations 1.21800 0.92832 1.03233 1.03126 1.20145 0.97054 0.83806 1.05549 1.26403 0.99418 0.97013 0.78244 1.70799 1.15469 1.02510 1.29885 1.21825 1.09705 0.94291 0.93065 1.16746 0.77779 0.85061 0.82024 1.90825 1.48374 1.27270 1.75518 1.45742 1.66187 1.18180 1.05037 1.22201 1.01547 0.89526 0.90267 1.22391 0.94802 0.89616 0.90275 0.87725 1.86594 1.19281 1.38523 1.91137 1.21190 0.98478 0.93860 0.86638 1.42236 1.84012 1.12257 0.98584 1.19219 1.39771 0.92375 0.86120 0.91208 1.24767 1.02416 0.96479 0.97231 1.69681 1.54206 1.16071 1.17814 0.86176 0.77745 0.80195 0.81967 1.21691 1.21729 1.20758 1.25284 0.98880 0.86581 0.95695 1.84390 1.63379 1.22555 1.37977 0.91494 0.92153 0.90674 0.88681 0.87203 0.74951 0.90126 0.90738 0.77967 0.95893 0.95338 0.77603 0.93470 0.75292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.37 16 2 C -0.03 -0.15 6.56 -27.88 -0.18 -0.33 16 3 C 0.20 1.85 7.56 -13.08 -0.10 1.75 16 4 N -0.46 -5.40 11.06 -7.65 -0.08 -5.48 16 5 C -0.07 -0.85 6.99 -83.02 -0.58 -1.43 16 6 C 0.60 8.47 7.81 -12.52 -0.10 8.37 16 7 O -0.54 -8.85 16.89 5.27 0.09 -8.76 16 8 N -0.70 -9.45 5.50 -61.38 -0.34 -9.78 16 9 C 0.09 1.22 5.31 -4.04 -0.02 1.20 16 10 C 0.09 1.42 3.09 -26.73 -0.08 1.34 16 11 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 12 O -0.55 -9.16 13.03 -35.23 -0.46 -9.62 16 13 C 0.13 2.49 5.92 -4.04 -0.02 2.47 16 14 N -0.73 -18.61 5.49 -59.91 -0.33 -18.94 16 15 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 19 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.01 0.09 11.95 29.96 0.36 0.45 16 24 O -0.20 -1.82 10.73 6.51 0.07 -1.75 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.41 5.47 8.20 -40.82 -0.33 5.14 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.37 5.19 9.05 45.56 0.41 5.61 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.39 10.70 7.54 -40.82 -0.31 10.39 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.23 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -34.97 337.61 -5.30 -40.27 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -4.43 Total: 13.33 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -0.61 Total: 5.92 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.03 Total: -62.06 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.30 Total: -20.13 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.97 -5.30 -40.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496967650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.461 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds