Wall clock time and date at job start Tue Mar 31 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46944 * 2 1 4 4 N 1.29935 * 125.37537 * 90.34475 * 3 2 1 5 5 C 1.36068 * 108.47425 * 180.16212 * 4 3 2 6 6 C 1.47424 * 126.45078 * 179.81969 * 5 4 3 7 7 O 1.21607 * 120.00291 * 179.69368 * 6 5 4 8 8 N 1.34779 * 119.99787 * 359.69789 * 6 5 4 9 9 C 1.46494 * 119.99921 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47283 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47269 * 305.00317 * 10 9 8 12 12 O 1.42903 * 109.46459 * 65.00211 * 10 9 8 13 13 C 1.53001 * 109.47376 * 185.00021 * 10 9 8 14 14 N 1.46497 * 109.46900 * 180.02562 * 13 10 9 15 15 C 1.36940 * 119.99699 * 180.02562 * 14 13 10 16 16 H 1.08003 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47344 * 90.00426 * 19 17 15 21 21 H 1.48507 * 109.46989 * 209.99999 * 19 17 15 22 22 H 1.48500 * 109.47285 * 330.00003 * 19 17 15 23 23 C 1.36089 * 107.10273 * 359.56538 * 5 4 3 24 24 O 1.34049 * 125.37817 * 270.02141 * 3 2 1 25 25 H 1.08995 * 109.47852 * 299.99812 * 1 2 3 26 26 H 1.08996 * 109.47392 * 60.00332 * 1 2 3 27 27 H 1.09005 * 109.46777 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47177 * 240.00158 * 2 1 3 29 29 H 1.09004 * 109.47402 * 120.00038 * 2 1 3 30 30 H 0.96999 * 119.99691 * 359.97438 * 8 6 5 31 31 H 1.09005 * 109.47040 * 60.00167 * 9 8 6 32 32 H 1.08999 * 109.47079 * 299.99869 * 9 8 6 33 33 H 0.96700 * 114.00311 * 60.00313 * 12 10 9 34 34 H 1.08999 * 109.47164 * 300.00361 * 13 10 9 35 35 H 1.08997 * 109.47124 * 60.00063 * 13 10 9 36 36 H 0.96996 * 120.00310 * 359.97438 * 14 13 10 37 37 H 0.97001 * 119.99921 * 180.02562 * 18 17 15 38 38 H 1.08005 * 126.52973 * 180.27638 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2890 2.1279 1.0594 5 6 2.7172 3.3574 0.6639 6 6 3.1117 4.4725 1.5439 7 8 3.4837 5.5252 1.0619 8 7 3.0602 4.3251 2.8826 9 6 3.4527 5.4329 3.7571 10 6 3.3020 5.0070 5.2189 11 1 2.2847 4.6560 5.3920 12 8 4.2245 3.9539 5.5055 13 6 3.5917 6.2010 6.1306 14 7 3.4480 5.7929 7.5302 15 6 3.6596 6.7008 8.5333 16 1 3.9320 7.7178 8.2925 17 6 3.5229 6.3142 9.8595 18 7 3.1893 5.0752 10.1528 19 14 3.8108 7.5529 11.2277 20 1 2.5333 8.2358 11.5542 21 1 4.3183 6.8496 12.4333 22 1 4.8099 8.5578 10.7836 23 6 2.7183 3.3621 -0.6970 24 8 2.2905 2.1527 -1.0930 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.7632 3.4855 3.2670 31 1 2.8132 6.2939 3.5621 32 1 4.4912 5.6999 3.5613 33 1 5.1513 4.1959 5.3730 34 1 4.6090 6.5520 5.9574 35 1 2.8882 7.0043 5.9118 36 1 3.2022 4.8798 7.7464 37 1 3.0934 4.8052 11.0795 38 1 3.0083 4.1825 -1.3368 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496967650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:12 Heat of formation + Delta-G solvation = -92.916031 kcal Electronic energy + Delta-G solvation = -21325.480802 eV Core-core repulsion = 17782.525445 eV Total energy + Delta-G solvation = -3542.955357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.50499 -40.77568 -38.96293 -36.17250 -36.04646 -35.33315 -34.83867 -33.20099 -30.96980 -30.31258 -27.41141 -25.50384 -25.14144 -23.94251 -22.80323 -22.19737 -21.40856 -19.47450 -19.10881 -17.93716 -17.87926 -17.50381 -17.20326 -16.57841 -16.42326 -15.89968 -15.71433 -15.56463 -15.31011 -14.95840 -14.68785 -14.37595 -14.21634 -13.89097 -13.58521 -13.30799 -12.96320 -12.75523 -12.63844 -12.37404 -12.17167 -12.04887 -12.01446 -11.91314 -11.81788 -11.52855 -11.01157 -10.93324 -10.34632 -10.01504 -9.01997 -7.95018 -5.24999 0.01949 0.89895 1.47469 1.49588 1.53491 1.58074 1.95593 2.14910 2.55622 2.80289 3.35527 3.43837 3.54534 3.66784 3.74072 4.00281 4.17045 4.20820 4.25526 4.35408 4.38944 4.55981 4.58168 4.61564 4.68915 4.91861 4.98788 5.04390 5.04831 5.16759 5.23914 5.34721 5.47789 6.21794 6.26097 6.52569 6.77396 6.97746 7.32928 8.08034 8.31341 9.28307 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.002699 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.554876 B =10373.212252 C =11071.363188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C 0.203 3.797 4 N -0.486 5.486 5 C -0.103 4.103 6 C 0.599 3.401 7 O -0.569 6.569 8 N -0.698 5.698 9 C 0.101 3.899 10 C 0.107 3.893 11 H 0.098 0.902 12 O -0.564 6.564 13 C 0.124 3.876 14 N -0.741 5.741 15 C -0.249 4.249 16 H 0.078 0.922 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.976 3.024 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.268 1.268 23 C 0.029 3.971 24 O -0.194 6.194 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.415 0.585 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.385 0.615 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.377 0.623 37 H 0.251 0.749 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -9.847 -26.163 28.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.007 4.007 4 N -0.216 5.216 5 C -0.222 4.222 6 C 0.386 3.614 7 O -0.449 6.449 8 N -0.348 5.348 9 C -0.023 4.023 10 C 0.047 3.953 11 H 0.116 0.884 12 O -0.370 6.370 13 C -0.004 4.004 14 N -0.384 5.384 15 C -0.380 4.380 16 H 0.096 0.904 17 C -0.269 4.269 18 N -0.619 5.619 19 Si 0.805 3.195 20 H -0.213 1.213 21 H -0.222 1.222 22 H -0.193 1.193 23 C -0.045 4.045 24 O -0.079 6.079 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.252 0.748 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -3.368 -9.464 -25.658 27.555 hybrid contribution 0.505 0.708 0.597 1.055 sum -2.864 -8.756 -25.061 26.701 Atomic orbital electron populations 1.21787 0.92359 1.04332 1.02189 1.20417 0.97285 0.81709 1.07116 1.27199 0.97902 0.97898 0.77652 1.70763 1.16855 1.02777 1.31208 1.21697 1.12268 0.94400 0.93853 1.16965 0.77102 0.85252 0.82080 1.90799 1.49797 1.28414 1.75905 1.45685 1.66067 1.18033 1.05061 1.21989 1.02036 0.89590 0.88699 1.22104 0.94360 0.87979 0.90842 0.88418 1.86572 1.20300 1.38834 1.91315 1.21386 0.99031 0.95535 0.84433 1.42427 1.84022 1.11341 1.00618 1.19655 1.38293 0.93053 0.87034 0.90449 1.25627 1.03173 0.98345 0.99754 1.69845 1.56103 1.18071 1.17876 0.85103 0.77796 0.78016 0.78594 1.21330 1.22179 1.19314 1.25787 0.96605 0.86984 0.95111 1.84434 1.63187 1.22407 1.37911 0.93328 0.92158 0.88567 0.86039 0.86661 0.74816 0.89830 0.90097 0.76611 0.94837 0.94617 0.79109 0.93978 0.72656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 71.98 0.71 -0.48 16 2 C -0.03 -0.24 6.56 29.85 0.20 -0.04 16 3 C 0.20 3.49 7.56 88.39 0.67 4.16 16 4 N -0.49 -11.20 11.06 -293.03 -3.24 -14.44 16 5 C -0.10 -2.47 6.99 40.41 0.28 -2.19 16 6 C 0.60 16.69 7.81 86.66 0.68 17.37 16 7 O -0.57 -18.25 16.89 -4.05 -0.07 -18.31 16 8 N -0.70 -18.54 5.50 -466.37 -2.56 -21.11 16 9 C 0.10 2.69 5.31 86.38 0.46 3.15 16 10 C 0.11 3.35 3.09 30.60 0.09 3.45 16 11 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 12 O -0.56 -18.52 13.03 -148.98 -1.94 -20.46 16 13 C 0.12 4.75 5.92 86.38 0.51 5.27 16 14 N -0.74 -38.03 5.49 -343.46 -1.89 -39.91 16 15 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 18 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 19 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.03 0.52 11.95 67.32 0.80 1.33 16 24 O -0.19 -3.21 10.73 0.39 0.00 -3.21 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 28 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.42 10.94 8.20 -92.71 -0.76 10.18 16 31 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.38 10.43 9.05 -74.06 -0.67 9.76 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.38 21.01 7.54 -92.71 -0.70 20.31 16 37 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.26 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -74.65 337.61 -2.70 -77.35 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.02 Total: 36.83 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.71 Total: 14.83 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -7.41 Total: -135.57 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -2.01 Total: -41.98 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -74.65 -2.70 -77.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496967650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.568 kcal (2) G-P(sol) polarization free energy of solvation -74.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds