Wall clock time and date at job start Tue Mar 31 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86798 * 120.00427 * 2 1 4 4 H 1.48502 * 109.47122 * 270.00217 * 3 2 1 5 5 H 1.48497 * 109.46981 * 29.99596 * 3 2 1 6 6 H 1.48504 * 109.47558 * 149.99995 * 3 2 1 7 7 C 1.37884 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99719 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.77833 * 298.20935 * 9 7 2 11 11 C 1.55154 * 110.72400 * 61.44903 * 9 7 2 12 12 C 1.54905 * 101.58436 * 153.86448 * 11 9 7 13 13 N 1.47426 * 104.83085 * 322.99479 * 12 11 9 14 14 C 1.34784 * 125.64582 * 204.08956 * 13 12 11 15 15 O 1.21283 * 119.99590 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00007 * 0.02562 * 14 13 12 17 17 H 1.09004 * 112.84479 * 48.80573 * 16 14 13 18 18 C 1.53778 * 113.69101 * 277.53531 * 16 14 13 19 19 C 1.53784 * 87.08081 * 220.00971 * 18 16 14 20 20 C 1.53778 * 113.61086 * 179.97438 * 16 14 13 21 21 H 1.09004 * 113.69215 * 25.51345 * 20 16 14 22 22 C 1.50694 * 113.61739 * 254.61447 * 20 16 14 23 23 O 1.20832 * 119.99990 * 2.99997 * 22 20 16 24 24 O 1.34231 * 120.00488 * 183.00320 * 22 20 16 25 25 C 1.47019 * 108.70538 * 24.35074 * 13 12 11 26 26 H 0.97004 * 120.00082 * 0.02562 * 1 2 3 27 27 H 0.96703 * 114.00109 * 61.78767 * 10 9 7 28 28 H 1.09008 * 111.00057 * 35.78997 * 11 9 7 29 29 H 1.08995 * 111.03921 * 271.95905 * 11 9 7 30 30 H 1.08998 * 110.36729 * 204.15538 * 12 11 9 31 31 H 1.08998 * 110.45784 * 81.87467 * 12 11 9 32 32 H 1.08993 * 113.61229 * 105.46294 * 18 16 14 33 33 H 1.09000 * 113.61263 * 334.55944 * 18 16 14 34 34 H 1.09004 * 113.61451 * 270.88641 * 19 18 16 35 35 H 1.08994 * 113.61477 * 139.97943 * 19 18 16 36 36 H 0.96694 * 117.00505 * 179.97438 * 24 22 20 37 37 H 1.09010 * 109.88243 * 118.12857 * 25 13 12 38 38 H 1.08990 * 109.88869 * 239.29619 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4500 -2.6221 1.1776 11 6 0.3762 -2.6281 -1.2745 12 6 0.2717 -4.1662 -1.4257 13 7 1.5928 -4.6764 -1.0159 14 6 2.1329 -5.8518 -1.3944 15 8 3.2320 -6.1711 -0.9935 16 6 1.3709 -6.7692 -2.3158 17 1 0.9739 -6.2553 -3.1913 18 6 0.3353 -7.6481 -1.5949 19 6 0.7707 -8.7899 -2.5286 20 6 2.1231 -8.0675 -2.6525 21 1 2.8473 -8.3636 -1.8935 22 6 2.6943 -8.0901 -4.0468 23 8 2.5852 -7.1210 -4.7602 24 8 3.3243 -9.1869 -4.4963 25 6 2.2208 -3.6935 -0.1209 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2298 -1.9398 1.2639 28 1 0.8741 -2.1837 -2.1364 29 1 -0.6068 -2.1829 -1.1213 30 1 0.0672 -4.4324 -2.4627 31 1 -0.5067 -4.5612 -0.7728 32 1 -0.6943 -7.3259 -1.7500 33 1 0.5701 -7.8282 -0.5459 34 1 0.2095 -8.8285 -3.4623 35 1 0.8365 -9.7583 -2.0327 36 1 3.6736 -9.1542 -5.3974 37 1 2.3881 -4.1389 0.8599 38 1 3.1675 -3.3582 -0.5444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574481126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:36 Heat of formation + Delta-G solvation = -157.183999 kcal Electronic energy + Delta-G solvation = -22947.804141 eV Core-core repulsion = 19369.769166 eV Total energy + Delta-G solvation = -3578.034976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.03499 -39.54807 -38.02706 -36.74641 -36.10865 -34.32691 -32.23248 -29.89382 -28.55543 -27.53068 -26.84393 -24.75697 -22.49486 -22.21034 -20.30307 -19.49860 -18.82701 -18.15858 -17.50463 -17.09387 -16.51004 -15.75031 -15.35510 -15.08230 -14.92166 -14.27209 -14.25149 -13.88043 -13.11812 -13.01652 -12.79644 -12.50932 -12.17068 -12.07394 -11.76460 -11.65536 -11.48980 -11.38311 -11.35596 -11.14322 -10.88799 -10.77308 -10.59779 -10.49366 -10.44755 -10.11939 -9.46523 -9.27900 -8.68594 -8.24221 -8.03148 -6.29740 -4.37025 2.09307 2.87534 2.96995 3.20013 3.27417 3.31836 3.53742 4.12150 4.26698 4.28142 4.52340 4.66677 4.96452 5.05153 5.26359 5.40230 5.47844 5.52812 5.57403 5.67957 5.71896 5.75678 5.92059 6.00727 6.13536 6.21802 6.36766 6.43343 6.68481 6.89632 6.95519 7.29158 7.33865 7.72202 7.78524 8.01091 8.08971 8.57584 8.65910 9.28768 9.37704 10.77872 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030180 B = 0.004092 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.552429 B = 6840.374425 C = 7157.162640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.135 4.135 12 C 0.095 3.905 13 N -0.602 5.602 14 C 0.532 3.468 15 O -0.557 6.557 16 C -0.113 4.113 17 H 0.124 0.876 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.089 4.089 21 H 0.139 0.861 22 C 0.490 3.510 23 O -0.512 6.512 24 O -0.516 6.516 25 C 0.122 3.878 26 H 0.268 0.732 27 H 0.382 0.618 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.407 0.593 37 H 0.061 0.939 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -14.925 -6.494 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.174 4.174 12 C -0.028 4.028 13 N -0.334 5.334 14 C 0.320 3.680 15 O -0.436 6.436 16 C -0.134 4.134 17 H 0.142 0.858 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.109 4.109 21 H 0.157 0.843 22 C 0.332 3.668 23 O -0.399 6.399 24 O -0.327 6.327 25 C 0.000 4.000 26 H 0.078 0.922 27 H 0.232 0.768 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.266 0.734 37 H 0.079 0.921 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.618 -15.284 -5.990 16.495 hybrid contribution 0.348 1.608 -0.883 1.867 sum -1.271 -13.676 -6.872 15.358 Atomic orbital electron populations 1.69691 1.05947 1.27637 1.50257 1.24972 0.95027 0.99501 0.93437 0.86417 0.79926 0.82397 0.78264 1.20472 1.21003 1.19675 1.21514 0.93707 0.90217 1.51898 0.91778 1.19464 0.86944 0.90643 0.82235 1.86136 1.51668 1.56530 1.45061 1.23302 1.02891 0.90193 1.00968 1.22532 0.84223 0.97587 0.98433 1.48596 1.19494 1.17902 1.47405 1.19798 0.85901 0.80838 0.81447 1.90650 1.20742 1.74396 1.57842 1.22723 0.96970 0.93698 0.99992 0.85773 1.22801 0.98965 0.94493 0.99573 1.22846 0.93219 0.98804 1.00770 1.22460 0.98240 0.98418 0.91738 0.84327 1.23337 0.74175 0.79504 0.89739 1.90732 1.55478 1.35546 1.58177 1.84546 1.68576 1.41920 1.37675 1.22090 0.96810 0.88534 0.92548 0.92224 0.76813 0.91434 0.89305 0.92105 0.91787 0.89512 0.88842 0.89277 0.89442 0.73433 0.92054 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.80 10.69 55.43 0.59 -22.21 16 2 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.03 8.22 -34.44 -0.28 -14.31 16 8 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 9 C 0.25 5.93 0.84 -89.93 -0.08 5.85 16 10 O -0.59 -14.42 13.06 -35.23 -0.46 -14.88 16 11 C -0.13 -2.89 5.47 -24.59 -0.13 -3.02 16 12 C 0.09 1.69 6.68 -2.53 -0.02 1.68 16 13 N -0.60 -11.93 3.33 -170.52 -0.57 -12.49 16 14 C 0.53 9.95 7.38 -10.98 -0.08 9.87 16 15 O -0.56 -12.04 16.23 5.55 0.09 -11.95 16 16 C -0.11 -1.57 2.61 -90.96 -0.24 -1.80 16 17 H 0.12 1.73 6.81 -51.93 -0.35 1.38 16 18 C -0.12 -1.25 7.63 -25.92 -0.20 -1.45 16 19 C -0.12 -1.04 7.63 -25.89 -0.20 -1.24 16 20 C -0.09 -1.09 3.58 -90.94 -0.33 -1.41 16 21 H 0.14 1.77 7.44 -51.93 -0.39 1.38 16 22 C 0.49 6.28 7.85 36.00 0.28 6.57 16 23 O -0.51 -8.21 16.68 -18.76 -0.31 -8.53 16 24 O -0.52 -4.98 13.42 -39.26 -0.53 -5.50 16 25 C 0.12 2.76 6.22 -3.06 -0.02 2.75 16 26 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.38 9.38 7.49 45.56 0.34 9.72 16 28 H 0.07 1.51 8.04 -51.92 -0.42 1.10 16 29 H 0.09 1.96 7.54 -51.93 -0.39 1.57 16 30 H 0.06 0.93 7.24 -51.93 -0.38 0.56 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.41 2.18 9.10 45.56 0.41 2.59 16 37 H 0.06 1.43 8.07 -51.92 -0.42 1.01 16 38 H 0.07 1.68 7.66 -51.93 -0.40 1.28 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -31.21 319.56 -6.40 -37.60 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -3.63 Total: 12.61 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.38 Total: 5.26 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.03 Total: -34.70 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.21 Total: -40.86 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.21 -6.40 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.580 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds