Wall clock time and date at job start Tue Mar 31 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86798 * 120.00427 * 2 1 4 4 H 1.48502 * 109.47122 * 270.00217 * 3 2 1 5 5 H 1.48497 * 109.46981 * 29.99596 * 3 2 1 6 6 H 1.48504 * 109.47558 * 149.99995 * 3 2 1 7 7 C 1.37884 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99719 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.77833 * 298.20935 * 9 7 2 11 11 C 1.55154 * 110.72400 * 61.44903 * 9 7 2 12 12 C 1.54905 * 101.58436 * 153.86448 * 11 9 7 13 13 N 1.47426 * 104.83085 * 322.99479 * 12 11 9 14 14 C 1.34784 * 125.64582 * 204.08956 * 13 12 11 15 15 O 1.21283 * 119.99590 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00007 * 0.02562 * 14 13 12 17 17 H 1.09004 * 112.84479 * 48.80573 * 16 14 13 18 18 C 1.53778 * 113.69101 * 277.53531 * 16 14 13 19 19 C 1.53784 * 87.08081 * 220.00971 * 18 16 14 20 20 C 1.53778 * 113.61086 * 179.97438 * 16 14 13 21 21 H 1.09004 * 113.69215 * 25.51345 * 20 16 14 22 22 C 1.50694 * 113.61739 * 254.61447 * 20 16 14 23 23 O 1.20832 * 119.99990 * 2.99997 * 22 20 16 24 24 O 1.34231 * 120.00488 * 183.00320 * 22 20 16 25 25 C 1.47019 * 108.70538 * 24.35074 * 13 12 11 26 26 H 0.97004 * 120.00082 * 0.02562 * 1 2 3 27 27 H 0.96703 * 114.00109 * 61.78767 * 10 9 7 28 28 H 1.09008 * 111.00057 * 35.78997 * 11 9 7 29 29 H 1.08995 * 111.03921 * 271.95905 * 11 9 7 30 30 H 1.08998 * 110.36729 * 204.15538 * 12 11 9 31 31 H 1.08998 * 110.45784 * 81.87467 * 12 11 9 32 32 H 1.08993 * 113.61229 * 105.46294 * 18 16 14 33 33 H 1.09000 * 113.61263 * 334.55944 * 18 16 14 34 34 H 1.09004 * 113.61451 * 270.88641 * 19 18 16 35 35 H 1.08994 * 113.61477 * 139.97943 * 19 18 16 36 36 H 0.96694 * 117.00505 * 179.97438 * 24 22 20 37 37 H 1.09010 * 109.88243 * 118.12857 * 25 13 12 38 38 H 1.08990 * 109.88869 * 239.29619 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4500 -2.6221 1.1776 11 6 0.3762 -2.6281 -1.2745 12 6 0.2717 -4.1662 -1.4257 13 7 1.5928 -4.6764 -1.0159 14 6 2.1329 -5.8518 -1.3944 15 8 3.2320 -6.1711 -0.9935 16 6 1.3709 -6.7692 -2.3158 17 1 0.9739 -6.2553 -3.1913 18 6 0.3353 -7.6481 -1.5949 19 6 0.7707 -8.7899 -2.5286 20 6 2.1231 -8.0675 -2.6525 21 1 2.8473 -8.3636 -1.8935 22 6 2.6943 -8.0901 -4.0468 23 8 2.5852 -7.1210 -4.7602 24 8 3.3243 -9.1869 -4.4963 25 6 2.2208 -3.6935 -0.1209 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2298 -1.9398 1.2639 28 1 0.8741 -2.1837 -2.1364 29 1 -0.6068 -2.1829 -1.1213 30 1 0.0672 -4.4324 -2.4627 31 1 -0.5067 -4.5612 -0.7728 32 1 -0.6943 -7.3259 -1.7500 33 1 0.5701 -7.8282 -0.5459 34 1 0.2095 -8.8285 -3.4623 35 1 0.8365 -9.7583 -2.0327 36 1 3.6736 -9.1542 -5.3974 37 1 2.3881 -4.1389 0.8599 38 1 3.1675 -3.3582 -0.5444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574481126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:36 Heat of formation + Delta-G solvation = -180.667880 kcal Electronic energy + Delta-G solvation = -22948.822479 eV Core-core repulsion = 19369.769166 eV Total energy + Delta-G solvation = -3579.053313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10188 -40.87268 -39.42459 -38.12344 -37.05416 -36.10978 -34.22342 -31.59283 -30.21976 -28.56236 -28.10367 -26.43744 -23.96716 -23.16400 -21.78831 -20.96035 -20.01771 -19.31243 -19.08318 -18.49170 -17.67847 -17.07799 -16.93307 -16.55765 -16.53249 -16.05135 -15.43759 -15.05515 -14.81103 -14.28824 -13.97844 -13.88087 -13.71775 -13.31334 -13.23431 -13.15562 -13.06291 -12.67274 -12.63948 -12.60393 -12.45901 -12.29062 -12.16822 -11.97851 -11.54732 -11.40897 -11.28473 -10.82882 -10.62285 -10.15604 -9.65773 -8.26183 -6.40371 1.13089 1.39863 1.43023 1.51859 1.52744 1.89014 2.20747 2.39033 2.99305 3.15064 3.40718 3.53989 3.66305 3.84566 3.97667 4.01125 4.26625 4.39248 4.45536 4.54882 4.57707 4.64116 4.66803 4.79846 4.89381 4.95883 5.02593 5.15619 5.20929 5.33301 5.45647 5.51815 5.56677 5.74761 6.06764 6.55723 6.63741 6.96044 7.07154 7.29882 7.39663 8.79813 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030180 B = 0.004092 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.552429 B = 6840.374425 C = 7157.162640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.041 3.959 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.567 4.567 8 H 0.048 0.952 9 C 0.237 3.763 10 O -0.590 6.590 11 C -0.126 4.126 12 C 0.105 3.895 13 N -0.608 5.608 14 C 0.526 3.474 15 O -0.593 6.593 16 C -0.117 4.117 17 H 0.128 0.872 18 C -0.113 4.113 19 C -0.096 4.096 20 C -0.098 4.098 21 H 0.130 0.870 22 C 0.495 3.505 23 O -0.551 6.551 24 O -0.506 6.506 25 C 0.128 3.872 26 H 0.272 0.728 27 H 0.380 0.620 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.427 0.573 37 H 0.046 0.954 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -16.356 -7.485 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.161 4.161 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.605 4.605 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.399 6.399 11 C -0.165 4.165 12 C -0.016 4.016 13 N -0.339 5.339 14 C 0.317 3.683 15 O -0.475 6.475 16 C -0.138 4.138 17 H 0.146 0.854 18 C -0.150 4.150 19 C -0.133 4.133 20 C -0.117 4.117 21 H 0.148 0.852 22 C 0.339 3.661 23 O -0.442 6.442 24 O -0.319 6.319 25 C 0.005 3.995 26 H 0.082 0.918 27 H 0.230 0.770 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.288 0.712 37 H 0.064 0.936 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.036 -16.752 -7.002 18.408 hybrid contribution 0.864 2.029 -0.565 2.277 sum -2.172 -14.722 -7.566 16.695 Atomic orbital electron populations 1.69735 1.06416 1.28433 1.49559 1.25539 0.95892 1.01765 0.92933 0.85580 0.78616 0.79285 0.78262 1.20055 1.20051 1.20338 1.21724 0.93325 0.92008 1.53457 0.93396 1.19548 0.87461 0.90223 0.83037 1.86119 1.51656 1.56351 1.45729 1.23082 1.01590 0.93002 0.98847 1.22546 0.83575 0.94682 1.00841 1.48686 1.20090 1.17991 1.47142 1.20796 0.85690 0.80588 0.81273 1.90622 1.22540 1.75092 1.59293 1.22877 0.98211 0.93372 0.99364 0.85396 1.22857 0.98977 0.93855 0.99339 1.22844 0.90201 0.99037 1.01218 1.22566 0.99848 0.98148 0.91166 0.85239 1.23442 0.73612 0.79367 0.89703 1.90722 1.57186 1.36966 1.59306 1.84498 1.67787 1.40359 1.39276 1.21784 0.96201 0.89078 0.92474 0.91814 0.77028 0.92980 0.89858 0.88790 0.90024 0.87251 0.89354 0.87543 0.86991 0.71160 0.93550 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.74 10.69 21.45 0.23 -45.51 16 2 C 0.04 2.09 5.28 84.66 0.45 2.53 16 3 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.57 -30.52 8.22 25.60 0.21 -30.31 16 8 H 0.05 2.65 7.57 -2.91 -0.02 2.63 16 9 C 0.24 11.61 0.84 -10.35 -0.01 11.60 16 10 O -0.59 -29.44 13.06 -148.98 -1.95 -31.38 16 11 C -0.13 -5.41 5.47 31.98 0.17 -5.23 16 12 C 0.11 3.59 6.68 86.85 0.58 4.17 16 13 N -0.61 -24.00 3.33 -811.78 -2.70 -26.70 16 14 C 0.53 19.55 7.38 87.66 0.65 20.19 16 15 O -0.59 -26.19 16.23 -3.04 -0.05 -26.24 16 16 C -0.12 -3.04 2.61 -11.02 -0.03 -3.07 16 17 H 0.13 3.27 6.81 -2.38 -0.02 3.25 16 18 C -0.11 -1.96 7.63 31.12 0.24 -1.72 16 19 C -0.10 -1.30 7.63 31.14 0.24 -1.06 16 20 C -0.10 -2.19 3.58 -11.00 -0.04 -2.23 16 21 H 0.13 3.17 7.44 -2.39 -0.02 3.15 16 22 C 0.49 11.83 7.85 71.23 0.56 12.39 16 23 O -0.55 -17.10 16.68 21.95 0.37 -16.73 16 24 O -0.51 -8.59 13.42 -51.42 -0.69 -9.28 16 25 C 0.13 5.99 6.22 86.73 0.54 6.53 16 26 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 27 H 0.38 18.85 7.49 -74.06 -0.55 18.30 16 28 H 0.05 2.35 8.04 -2.38 -0.02 2.33 16 29 H 0.08 3.63 7.54 -2.39 -0.02 3.62 16 30 H 0.09 2.62 7.24 -2.39 -0.02 2.60 16 31 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.11 1.15 8.09 -2.39 -0.02 1.13 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.43 3.58 9.10 -74.06 -0.67 2.91 16 37 H 0.05 2.26 8.07 -2.38 -0.02 2.24 16 38 H 0.05 2.62 7.66 -2.39 -0.02 2.60 16 Total: -1.00 -68.79 319.56 0.67 -68.12 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.12 Total: 30.17 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 3.56 Total: 13.80 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -2.47 Total: -72.21 kcal Atomic # 8 Polarization: -81.31 SS G_CDS: -2.32 Total: -83.63 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -68.79 0.67 -68.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.543 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds