Wall clock time and date at job start Tue Mar 31 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00354 * 2 1 4 4 H 1.48497 * 109.47107 * 240.00077 * 3 2 1 5 5 H 1.48496 * 109.47321 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 120.00422 * 3 2 1 7 7 C 1.37887 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99527 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91837 * 62.45031 * 9 7 2 11 11 C 1.55159 * 111.00610 * 298.54543 * 9 7 2 12 12 C 1.54318 * 102.94297 * 206.42544 * 11 9 7 13 13 N 1.47027 * 107.40227 * 22.11895 * 12 11 9 14 14 C 1.34774 * 125.65129 * 181.10566 * 13 12 11 15 15 O 1.21275 * 120.00612 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99722 * 0.02562 * 14 13 12 17 17 H 1.08996 * 112.84753 * 32.47800 * 16 14 13 18 18 C 1.53775 * 113.61241 * 163.78834 * 16 14 13 19 19 C 1.53781 * 87.08392 * 89.11347 * 18 16 14 20 20 C 1.53779 * 113.61135 * 261.28397 * 16 14 13 21 21 H 1.09004 * 113.61464 * 156.25238 * 20 16 14 22 22 C 1.50703 * 113.61865 * 25.42925 * 20 16 14 23 23 O 1.20815 * 120.00424 * 268.51863 * 22 20 16 24 24 O 1.34233 * 119.99362 * 88.51341 * 22 20 16 25 25 C 1.47747 * 108.52786 * 1.17772 * 13 12 11 26 26 H 0.97005 * 119.99336 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99764 * 297.55049 * 10 9 7 28 28 H 1.08997 * 110.71830 * 88.06297 * 11 9 7 29 29 H 1.09000 * 110.86934 * 324.85999 * 11 9 7 30 30 H 1.09001 * 109.88237 * 141.61004 * 12 11 9 31 31 H 1.08996 * 109.88645 * 262.62124 * 12 11 9 32 32 H 1.09006 * 113.61337 * 203.66408 * 18 16 14 33 33 H 1.09000 * 113.61748 * 334.56345 * 18 16 14 34 34 H 1.08995 * 113.61503 * 270.88007 * 19 18 16 35 35 H 1.08998 * 113.61345 * 139.98070 * 19 18 16 36 36 H 0.96696 * 116.99511 * 180.02562 * 24 22 20 37 37 H 1.08997 * 110.29085 * 216.94835 * 25 13 12 38 38 H 1.09000 * 110.43358 * 94.63690 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4606 -2.6320 -1.1837 11 6 0.3738 -2.6350 1.2722 12 6 0.2585 -4.1634 1.4511 13 7 1.3921 -4.7758 0.7427 14 6 1.6358 -6.0977 0.6450 15 8 2.6059 -6.4920 0.0333 16 6 0.7026 -7.0860 1.2959 17 1 -0.3326 -6.7454 1.3088 18 6 0.8733 -8.5252 0.7816 19 6 1.9269 -8.7114 1.8862 20 6 1.1999 -7.5976 2.6582 21 1 0.4021 -7.9621 3.3054 22 6 2.1311 -6.6419 3.3587 23 8 3.3244 -6.7294 3.1914 24 8 1.6346 -5.6934 4.1683 25 6 2.2180 -3.6988 0.1588 26 1 -0.4849 0.8401 0.0004 27 1 -0.2257 -1.9571 -1.2761 28 1 -0.6085 -2.1902 1.1128 29 1 0.8657 -2.1820 2.1329 30 1 0.3027 -4.4171 2.5102 31 1 -0.6800 -4.5169 1.0242 32 1 -0.0136 -9.1447 0.9151 33 1 1.2831 -8.5828 -0.2268 34 1 2.9364 -8.4409 1.5768 35 1 1.8793 -9.6843 2.3754 36 1 2.2709 -5.1035 4.5952 37 1 2.6062 -4.0046 -0.8127 38 1 3.0362 -3.4399 0.8308 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574481131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:42 Heat of formation + Delta-G solvation = -152.654632 kcal Electronic energy + Delta-G solvation = -23696.544367 eV Core-core repulsion = 20118.705800 eV Total energy + Delta-G solvation = -3577.838568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14379 -39.35010 -38.05240 -36.51919 -35.91187 -34.29945 -32.25100 -29.95986 -28.48431 -27.51009 -26.70917 -24.77150 -22.60250 -22.05487 -20.51749 -19.62367 -18.28606 -18.07533 -17.30536 -17.10154 -16.25977 -16.04500 -15.16293 -14.96185 -14.79973 -14.44485 -14.23522 -13.75063 -13.43300 -13.10314 -12.66769 -12.38201 -12.21636 -11.92297 -11.76627 -11.49403 -11.39100 -11.31804 -11.27652 -11.00096 -10.89858 -10.65361 -10.56485 -10.51510 -10.34248 -10.04965 -9.46038 -9.32599 -8.70424 -8.25391 -8.00739 -6.30925 -4.38951 2.18787 2.88158 3.00064 3.20336 3.25172 3.28527 3.48132 4.22929 4.25011 4.45243 4.61423 4.67851 4.96121 5.13351 5.19443 5.43838 5.52694 5.54399 5.64311 5.72155 5.82525 5.88937 5.96860 6.02423 6.24063 6.33273 6.41111 6.55028 6.62829 6.86927 6.93235 7.26711 7.31644 7.70707 7.92919 7.99153 8.09817 8.58117 8.64107 9.27906 9.36756 10.76490 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027949 B = 0.005000 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.566471 B = 5598.810770 C = 5885.624934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.134 4.134 12 C 0.094 3.906 13 N -0.602 5.602 14 C 0.531 3.469 15 O -0.539 6.539 16 C -0.117 4.117 17 H 0.106 0.894 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.094 4.094 21 H 0.130 0.870 22 C 0.480 3.520 23 O -0.500 6.500 24 O -0.513 6.513 25 C 0.122 3.878 26 H 0.268 0.732 27 H 0.380 0.620 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.409 0.591 37 H 0.070 0.930 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -11.932 7.546 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.173 4.173 12 C -0.029 4.029 13 N -0.334 5.334 14 C 0.318 3.682 15 O -0.417 6.417 16 C -0.139 4.139 17 H 0.125 0.875 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.114 4.114 21 H 0.148 0.852 22 C 0.321 3.679 23 O -0.387 6.387 24 O -0.325 6.325 25 C 0.000 4.000 26 H 0.078 0.922 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.268 0.732 37 H 0.088 0.912 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.691 -12.890 6.884 14.859 hybrid contribution 0.275 2.006 0.594 2.110 sum -2.417 -10.884 7.478 13.425 Atomic orbital electron populations 1.69707 1.05957 1.27744 1.50017 1.24974 0.95014 0.99476 0.93407 0.86476 0.79555 0.82050 0.78911 1.19981 1.21098 1.20061 1.21400 0.93686 0.90171 1.52190 0.91820 1.19601 0.87014 0.90601 0.81985 1.86148 1.51468 1.56912 1.44544 1.23153 1.03154 0.89887 1.01073 1.22278 0.88454 0.96771 0.95365 1.48643 1.27499 1.04735 1.52560 1.19449 0.85758 0.81703 0.81311 1.90666 1.29662 1.78301 1.43072 1.22434 1.00546 0.96615 0.94303 0.87539 1.22743 0.99300 0.92890 1.00668 1.22995 1.00733 0.96476 0.95298 1.22510 0.98839 0.95491 0.94566 0.85193 1.23254 0.88495 0.79826 0.76285 1.90736 1.17364 1.70638 1.59943 1.84517 1.45890 1.43970 1.58157 1.22431 0.93738 0.85953 0.97849 0.92166 0.77004 0.89508 0.91415 0.92117 0.92496 0.88913 0.89331 0.87495 0.90415 0.73177 0.91162 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.66 10.76 55.43 0.60 -22.06 16 2 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.90 8.27 -34.43 -0.28 -14.18 16 8 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 5.95 0.87 -89.62 -0.08 5.87 16 10 O -0.58 -14.67 13.16 -35.23 -0.46 -15.14 16 11 C -0.13 -2.82 5.38 -24.90 -0.13 -2.96 16 12 C 0.09 1.68 6.24 -3.06 -0.02 1.66 16 13 N -0.60 -11.99 3.34 -170.26 -0.57 -12.56 16 14 C 0.53 10.09 5.93 -10.98 -0.07 10.03 16 15 O -0.54 -11.99 15.57 5.56 0.09 -11.91 16 16 C -0.12 -1.60 3.71 -90.96 -0.34 -1.94 16 17 H 0.11 1.25 7.41 -51.93 -0.38 0.87 16 18 C -0.12 -1.34 7.42 -25.92 -0.19 -1.53 16 19 C -0.12 -1.40 7.05 -25.92 -0.18 -1.58 16 20 C -0.09 -1.12 4.21 -90.96 -0.38 -1.50 16 21 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 22 C 0.48 6.97 6.63 36.01 0.24 7.21 16 23 O -0.50 -9.05 16.61 -18.74 -0.31 -9.36 16 24 O -0.51 -6.23 12.43 -39.27 -0.49 -6.72 16 25 C 0.12 2.77 6.10 -2.35 -0.01 2.75 16 26 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.38 9.49 7.57 45.56 0.34 9.84 16 28 H 0.09 1.91 7.55 -51.93 -0.39 1.51 16 29 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 30 H 0.06 0.96 7.12 -51.93 -0.37 0.59 16 31 H 0.06 0.95 7.87 -51.93 -0.41 0.54 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.15 7.70 -51.93 -0.40 0.75 16 34 H 0.11 1.65 6.75 -51.93 -0.35 1.30 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.41 3.68 9.10 45.56 0.41 4.10 16 37 H 0.07 1.71 8.05 -51.93 -0.42 1.29 16 38 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -31.39 315.54 -6.57 -37.96 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -3.61 Total: 14.38 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.55 Total: 5.62 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.03 Total: -34.62 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.18 Total: -43.13 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.39 -6.57 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.695 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds