Wall clock time and date at job start Tue Mar 31 2020 02:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00354 * 2 1 4 4 H 1.48497 * 109.47107 * 240.00077 * 3 2 1 5 5 H 1.48496 * 109.47321 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 120.00422 * 3 2 1 7 7 C 1.37887 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99527 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91837 * 62.45031 * 9 7 2 11 11 C 1.55159 * 111.00610 * 298.54543 * 9 7 2 12 12 C 1.54318 * 102.94297 * 206.42544 * 11 9 7 13 13 N 1.47027 * 107.40227 * 22.11895 * 12 11 9 14 14 C 1.34774 * 125.65129 * 181.10566 * 13 12 11 15 15 O 1.21275 * 120.00612 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99722 * 0.02562 * 14 13 12 17 17 H 1.08996 * 112.84753 * 32.47800 * 16 14 13 18 18 C 1.53775 * 113.61241 * 163.78834 * 16 14 13 19 19 C 1.53781 * 87.08392 * 89.11347 * 18 16 14 20 20 C 1.53779 * 113.61135 * 261.28397 * 16 14 13 21 21 H 1.09004 * 113.61464 * 156.25238 * 20 16 14 22 22 C 1.50703 * 113.61865 * 25.42925 * 20 16 14 23 23 O 1.20815 * 120.00424 * 268.51863 * 22 20 16 24 24 O 1.34233 * 119.99362 * 88.51341 * 22 20 16 25 25 C 1.47747 * 108.52786 * 1.17772 * 13 12 11 26 26 H 0.97005 * 119.99336 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99764 * 297.55049 * 10 9 7 28 28 H 1.08997 * 110.71830 * 88.06297 * 11 9 7 29 29 H 1.09000 * 110.86934 * 324.85999 * 11 9 7 30 30 H 1.09001 * 109.88237 * 141.61004 * 12 11 9 31 31 H 1.08996 * 109.88645 * 262.62124 * 12 11 9 32 32 H 1.09006 * 113.61337 * 203.66408 * 18 16 14 33 33 H 1.09000 * 113.61748 * 334.56345 * 18 16 14 34 34 H 1.08995 * 113.61503 * 270.88007 * 19 18 16 35 35 H 1.08998 * 113.61345 * 139.98070 * 19 18 16 36 36 H 0.96696 * 116.99511 * 180.02562 * 24 22 20 37 37 H 1.08997 * 110.29085 * 216.94835 * 25 13 12 38 38 H 1.09000 * 110.43358 * 94.63690 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4606 -2.6320 -1.1837 11 6 0.3738 -2.6350 1.2722 12 6 0.2585 -4.1634 1.4511 13 7 1.3921 -4.7758 0.7427 14 6 1.6358 -6.0977 0.6450 15 8 2.6059 -6.4920 0.0333 16 6 0.7026 -7.0860 1.2959 17 1 -0.3326 -6.7454 1.3088 18 6 0.8733 -8.5252 0.7816 19 6 1.9269 -8.7114 1.8862 20 6 1.1999 -7.5976 2.6582 21 1 0.4021 -7.9621 3.3054 22 6 2.1311 -6.6419 3.3587 23 8 3.3244 -6.7294 3.1914 24 8 1.6346 -5.6934 4.1683 25 6 2.2180 -3.6988 0.1588 26 1 -0.4849 0.8401 0.0004 27 1 -0.2257 -1.9571 -1.2761 28 1 -0.6085 -2.1902 1.1128 29 1 0.8657 -2.1820 2.1329 30 1 0.3027 -4.4171 2.5102 31 1 -0.6800 -4.5169 1.0242 32 1 -0.0136 -9.1447 0.9151 33 1 1.2831 -8.5828 -0.2268 34 1 2.9364 -8.4409 1.5768 35 1 1.8793 -9.6843 2.3754 36 1 2.2709 -5.1035 4.5952 37 1 2.6062 -4.0046 -0.8127 38 1 3.0362 -3.4399 0.8308 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574481131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:41 Heat of formation + Delta-G solvation = -176.900411 kcal Electronic energy + Delta-G solvation = -23697.595743 eV Core-core repulsion = 20118.705800 eV Total energy + Delta-G solvation = -3578.889944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.30233 -40.71119 -39.51172 -37.91920 -37.03194 -36.09292 -34.23753 -31.66869 -30.16761 -28.46378 -28.13846 -26.41025 -24.07133 -23.14055 -21.90836 -21.31479 -19.55940 -19.27712 -19.04483 -18.42459 -17.46202 -17.36369 -16.95527 -16.63041 -16.12158 -15.81524 -15.70309 -15.22191 -14.88479 -14.61656 -14.07689 -13.76226 -13.64896 -13.51220 -13.27049 -13.12185 -13.03140 -12.66090 -12.60947 -12.44715 -12.30193 -12.27828 -12.02848 -11.86576 -11.52806 -11.42857 -11.28512 -10.85276 -10.63759 -10.17783 -9.61496 -8.25658 -6.40577 1.08889 1.41926 1.43992 1.47331 1.51112 1.88982 2.17569 2.39137 2.99072 3.27878 3.43116 3.47373 3.70243 3.78228 3.98988 4.16879 4.28392 4.33260 4.38402 4.53752 4.56938 4.67312 4.71406 4.78252 4.85056 4.99693 5.07559 5.14873 5.23774 5.41441 5.43210 5.52640 5.58560 5.75148 6.06544 6.57164 6.62935 6.92380 7.09467 7.29551 7.38493 8.80096 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027949 B = 0.005000 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.566471 B = 5598.810770 C = 5885.624934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.042 3.958 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.566 4.566 8 H 0.049 0.951 9 C 0.237 3.763 10 O -0.592 6.592 11 C -0.123 4.123 12 C 0.103 3.897 13 N -0.607 5.607 14 C 0.520 3.480 15 O -0.583 6.583 16 C -0.122 4.122 17 H 0.137 0.863 18 C -0.106 4.106 19 C -0.123 4.123 20 C -0.084 4.084 21 H 0.184 0.816 22 C 0.475 3.525 23 O -0.548 6.548 24 O -0.506 6.506 25 C 0.127 3.873 26 H 0.272 0.728 27 H 0.379 0.621 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.421 0.579 37 H 0.041 0.959 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 -12.973 9.227 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.160 4.160 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.605 4.605 8 H 0.067 0.933 9 C 0.197 3.803 10 O -0.401 6.401 11 C -0.162 4.162 12 C -0.018 4.018 13 N -0.339 5.339 14 C 0.310 3.690 15 O -0.463 6.463 16 C -0.143 4.143 17 H 0.155 0.845 18 C -0.143 4.143 19 C -0.160 4.160 20 C -0.102 4.102 21 H 0.201 0.799 22 C 0.319 3.681 23 O -0.438 6.438 24 O -0.318 6.318 25 C 0.004 3.996 26 H 0.082 0.918 27 H 0.228 0.772 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.282 0.718 37 H 0.059 0.941 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.057 -13.927 8.592 17.128 hybrid contribution 1.045 2.364 0.044 2.585 sum -4.013 -11.563 8.636 14.980 Atomic orbital electron populations 1.69756 1.06475 1.28499 1.49378 1.25542 0.95857 1.01754 0.92880 0.85629 0.78554 0.78985 0.78535 1.20619 1.20071 1.19717 1.21604 0.93367 0.91815 1.53667 0.93260 1.19724 0.87593 0.90211 0.82786 1.86134 1.51541 1.56800 1.45588 1.22924 1.01722 0.92484 0.99044 1.22296 0.88449 0.94118 0.96984 1.48739 1.27598 1.04826 1.52749 1.20582 0.86024 0.81836 0.80589 1.90644 1.31851 1.78896 1.44940 1.22524 1.00253 0.96241 0.95273 0.84505 1.22857 1.00746 0.91754 0.98971 1.22945 0.98576 0.98359 0.96128 1.22793 0.99349 0.94196 0.93910 0.79929 1.23923 0.88318 0.80043 0.75855 1.90732 1.19620 1.71906 1.61579 1.84486 1.46082 1.43662 1.57586 1.22130 0.93967 0.87028 0.96497 0.91820 0.77210 0.90265 0.92083 0.89194 0.90330 0.83935 0.91895 0.92183 0.86883 0.71788 0.94055 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.33 10.76 21.45 0.23 -45.10 16 2 C 0.04 2.12 5.29 84.66 0.45 2.57 16 3 Si 0.96 41.07 29.54 68.60 2.03 43.09 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.57 -30.06 8.27 25.60 0.21 -29.85 16 8 H 0.05 2.67 7.79 -2.91 -0.02 2.65 16 9 C 0.24 11.57 0.87 -10.15 -0.01 11.56 16 10 O -0.59 -30.35 13.16 -148.98 -1.96 -32.31 16 11 C -0.12 -5.11 5.38 31.78 0.17 -4.94 16 12 C 0.10 3.46 6.24 86.73 0.54 4.00 16 13 N -0.61 -23.98 3.34 -810.97 -2.71 -26.69 16 14 C 0.52 19.58 5.93 87.66 0.52 20.10 16 15 O -0.58 -26.91 15.57 -3.01 -0.05 -26.96 16 16 C -0.12 -2.92 3.71 -11.01 -0.04 -2.96 16 17 H 0.14 2.48 7.41 -2.39 -0.02 2.47 16 18 C -0.11 -2.04 7.42 31.12 0.23 -1.81 16 19 C -0.12 -2.62 7.05 31.12 0.22 -2.40 16 20 C -0.08 -1.66 4.21 -11.01 -0.05 -1.71 16 21 H 0.18 1.78 8.14 -2.39 -0.02 1.76 16 22 C 0.48 12.91 6.63 71.24 0.47 13.38 16 23 O -0.55 -20.02 16.61 22.00 0.37 -19.66 16 24 O -0.51 -10.91 12.43 -51.45 -0.64 -11.55 16 25 C 0.13 5.99 6.10 86.79 0.53 6.52 16 26 H 0.27 13.02 8.31 -92.70 -0.77 12.25 16 27 H 0.38 19.14 7.57 -74.06 -0.56 18.58 16 28 H 0.08 3.40 7.55 -2.39 -0.02 3.38 16 29 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 30 H 0.09 2.51 7.12 -2.39 -0.02 2.49 16 31 H 0.08 2.33 7.87 -2.39 -0.02 2.32 16 32 H 0.14 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.57 7.70 -2.39 -0.02 1.55 16 34 H 0.06 1.89 6.75 -2.39 -0.02 1.87 16 35 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.42 6.85 9.10 -74.06 -0.67 6.18 16 37 H 0.04 2.14 8.05 -2.39 -0.02 2.12 16 38 H 0.06 2.96 8.03 -2.39 -0.02 2.94 16 Total: -1.00 -72.00 315.54 0.39 -71.61 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.13 Total: 33.10 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 3.25 Total: 14.45 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -2.48 Total: -71.78 kcal Atomic # 8 Polarization: -88.20 SS G_CDS: -2.28 Total: -90.48 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -72.00 0.39 -71.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.289 kcal (2) G-P(sol) polarization free energy of solvation -72.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds