Wall clock time and date at job start Tue Mar 31 2020 02:07:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52999 * 115.55686 * 2 1
4 4 C 1.53002 * 117.49935 * 214.31692 * 2 1 3
5 5 C 1.52996 * 117.50254 * 145.69465 * 2 1 3
6 6 C 1.50702 * 117.51672 * 0.02562 * 5 2 1
7 7 O 1.20830 * 120.00198 * 327.39605 * 6 5 2
8 8 O 1.34231 * 119.99983 * 147.39449 * 6 5 2
9 9 C 1.50706 * 117.49949 * 214.98142 * 5 2 1
10 10 O 1.21282 * 119.99598 * 56.34858 * 9 5 2
11 11 N 1.34776 * 119.99754 * 236.63040 * 9 5 2
12 12 C 1.47063 * 136.05738 * 4.51637 * 11 9 5
13 13 C 1.53245 * 88.08360 * 207.20891 * 12 11 9
14 14 O 1.42894 * 114.19713 * 87.72551 * 13 12 11
15 15 C 1.50697 * 114.32815 * 220.47526 * 13 12 11
16 16 H 1.07998 * 120.00427 * 93.75594 * 15 13 12
17 17 C 1.37881 * 119.99983 * 273.76061 * 15 13 12
18 18 N 1.31514 * 119.99721 * 359.97438 * 17 15 13
19 19 Si 1.86793 * 120.00103 * 180.02562 * 17 15 13
20 20 H 1.48497 * 109.47402 * 359.97438 * 19 17 15
21 21 H 1.48499 * 109.47239 * 119.99820 * 19 17 15
22 22 H 1.48503 * 109.46828 * 239.99416 * 19 17 15
23 23 C 1.47066 * 136.05465 * 184.89663 * 11 9 5
24 24 H 1.08998 * 109.47176 * 274.30437 * 1 2 3
25 25 H 1.08995 * 109.47748 * 34.30619 * 1 2 3
26 26 H 1.09002 * 109.47238 * 154.30989 * 1 2 3
27 27 H 1.08999 * 109.47068 * 205.68647 * 3 2 1
28 28 H 1.09002 * 109.47556 * 325.69410 * 3 2 1
29 29 H 1.09003 * 109.46651 * 85.69555 * 3 2 1
30 30 H 1.09005 * 117.49436 * 145.01702 * 4 2 1
31 31 H 1.08997 * 117.49736 * 359.97438 * 4 2 1
32 32 H 0.96699 * 117.00079 * 174.98025 * 8 6 5
33 33 H 1.08998 * 113.46726 * 321.94047 * 12 11 9
34 34 H 1.08996 * 113.46711 * 92.38110 * 12 11 9
35 35 H 0.96703 * 113.99644 * 86.30740 * 14 13 12
36 36 H 0.96997 * 120.00131 * 180.02562 * 18 17 15
37 37 H 1.08999 * 113.46332 * 267.62060 * 23 11 9
38 38 H 1.08999 * 113.46714 * 38.05763 * 23 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1900 1.3803 0.0000
4 6 2.2365 -1.1209 -0.7651
5 6 2.2365 -1.1210 0.7648
6 6 1.3725 -2.1413 1.4603
7 8 0.3037 -1.8153 1.9199
8 8 1.7904 -3.4123 1.5690
9 6 3.5294 -0.7811 1.4607
10 8 3.5618 0.1173 2.2748
11 7 4.6507 -1.4718 1.1742
12 6 5.0300 -2.5278 0.2235
13 6 6.1050 -2.9694 1.2224
14 8 5.6487 -3.9105 2.1960
15 6 7.4182 -3.3545 0.5913
16 1 8.2060 -2.6222 0.4942
17 6 7.6139 -4.6418 0.1378
18 7 6.6547 -5.5337 0.2564
19 14 9.2418 -5.1193 -0.6438
20 1 10.1481 -3.9431 -0.6580
21 1 9.8650 -6.2154 0.1407
22 1 9.0064 -5.5791 -2.0361
23 6 6.0315 -1.5058 1.6791
24 1 -0.3633 0.0771 1.0247
25 1 -0.3634 0.8488 -0.5792
26 1 -0.3634 -0.9261 -0.4455
27 1 3.1823 1.3085 -0.4454
28 1 1.5810 2.0744 -0.5792
29 1 2.2772 1.7413 1.0248
30 1 3.1716 -0.8749 -1.2684
31 1 1.6112 -1.8586 -1.2681
32 1 1.2379 -4.0132 2.0874
33 1 4.2502 -3.2736 0.0694
34 1 5.4378 -2.1440 -0.7116
35 1 5.6963 -4.8316 1.9052
36 1 6.7924 -6.4394 -0.0623
37 1 6.7087 -0.8469 1.1356
38 1 6.1015 -1.3843 2.7601
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001603322282.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:07:08
Heat of formation + Delta-G solvation = -108.360000 kcal
Electronic energy + Delta-G solvation = -23618.093207 eV
Core-core repulsion = 20042.175398 eV
Total energy + Delta-G solvation = -3575.917808 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.130 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.94843 -39.41648 -38.15299 -36.74407 -35.83746 -34.03076 -32.20359 -30.25374
-28.46564 -27.52452 -25.74651 -25.12904 -24.90951 -22.04815 -20.39048 -19.21295
-18.38895 -17.79532 -17.44336 -16.68749 -15.92335 -15.72166 -15.18647 -14.63525
-14.50350 -14.22999 -14.04415 -13.75375 -13.42365 -13.06297 -12.85099 -12.53579
-12.39654 -12.18173 -11.96166 -11.79321 -11.57937 -11.43164 -11.26015 -11.12361
-11.00424 -10.90187 -10.49859 -10.28352 -10.21051 -9.86204 -9.60830 -9.22643
-8.79811 -8.40353 -7.91085 -6.42537 -4.53043 2.09129 2.79736 3.07727
3.11343 3.21282 3.24648 3.51475 3.53603 4.15711 4.48793 4.54870
4.73219 4.82334 4.99022 5.15072 5.47714 5.56032 5.61832 5.71124
5.77702 5.88584 5.89835 5.90071 5.94210 6.11791 6.23932 6.34192
6.37460 6.46493 6.57882 6.61716 6.72984 7.08652 7.60741 7.78218
8.01133 8.37295 8.50736 8.63373 9.18488 9.49006 10.63997
Molecular weight = 283.13amu
Principal moments of inertia in cm(-1)
A = 0.025442 B = 0.005168 C = 0.004925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1100.284271 B = 5416.910138 C = 5684.004293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.064 4.064
3 C -0.119 4.119
4 C -0.136 4.136
5 C -0.154 4.154
6 C 0.530 3.470
7 O -0.506 6.506
8 O -0.495 6.495
9 C 0.579 3.421
10 O -0.547 6.547
11 N -0.622 5.622
12 C 0.074 3.926
13 C 0.241 3.759
14 O -0.569 6.569
15 C -0.533 4.533
16 H 0.073 0.927
17 C 0.072 3.928
18 N -0.896 5.896
19 Si 0.908 3.092
20 H -0.270 1.270
21 H -0.280 1.280
22 H -0.281 1.281
23 C 0.107 3.893
24 H 0.080 0.920
25 H 0.063 0.937
26 H 0.055 0.945
27 H 0.058 0.942
28 H 0.066 0.934
29 H 0.077 0.923
30 H 0.113 0.887
31 H 0.108 0.892
32 H 0.410 0.590
33 H 0.071 0.929
34 H 0.080 0.920
35 H 0.394 0.606
36 H 0.273 0.727
37 H 0.087 0.913
38 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.986 4.895 -4.416 10.355
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.065 4.065
3 C -0.176 4.176
4 C -0.173 4.173
5 C -0.158 4.158
6 C 0.372 3.628
7 O -0.394 6.394
8 O -0.305 6.305
9 C 0.366 3.634
10 O -0.426 6.426
11 N -0.354 5.354
12 C -0.049 4.049
13 C 0.199 3.801
14 O -0.383 6.383
15 C -0.572 4.572
16 H 0.091 0.909
17 C -0.130 4.130
18 N -0.536 5.536
19 Si 0.735 3.265
20 H -0.194 1.194
21 H -0.206 1.206
22 H -0.207 1.207
23 C -0.015 4.015
24 H 0.099 0.901
25 H 0.082 0.918
26 H 0.074 0.926
27 H 0.077 0.923
28 H 0.085 0.915
29 H 0.096 0.904
30 H 0.131 0.869
31 H 0.127 0.873
32 H 0.269 0.731
33 H 0.089 0.911
34 H 0.099 0.901
35 H 0.250 0.750
36 H 0.084 0.916
37 H 0.105 0.895
38 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -8.344 6.158 -3.746 11.026
hybrid contribution 0.521 -1.455 -0.461 1.612
sum -7.823 4.704 -4.207 10.051
Atomic orbital electron populations
1.21493 0.90516 1.01664 1.03689 1.21740 0.95743 0.91169 0.97799
1.21453 0.99694 0.92838 1.03620 1.23525 1.03556 1.00888 0.89304
1.20956 0.97607 1.00763 0.96466 1.21596 0.83763 0.81435 0.76045
1.90664 1.22979 1.80342 1.45396 1.84649 1.55976 1.20840 1.69053
1.18171 0.82014 0.80965 0.82234 1.90655 1.85274 1.30857 1.35830
1.49632 1.09165 1.38281 1.38334 1.24195 0.98736 0.87208 0.94788
1.19464 0.90538 0.85100 0.84983 1.86045 1.87466 1.21984 1.42756
1.21458 0.99478 0.96882 1.39351 0.90902 1.25072 0.97381 0.96032
0.94524 1.69278 1.32589 1.04686 1.47092 0.86274 0.82692 0.78736
0.78788 1.19422 1.20627 1.20675 1.23409 0.79735 0.98451 0.99871
0.90098 0.91766 0.92610 0.92263 0.91478 0.90387 0.86887 0.87335
0.73090 0.91056 0.90142 0.74952 0.91634 0.89511 0.91490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.45 8.26 37.16 0.31 -1.15 16
2 C -0.06 -0.90 2.69 -154.51 -0.42 -1.32 16
3 C -0.12 -1.58 8.70 37.16 0.32 -1.26 16
4 C -0.14 -1.86 8.68 -26.73 -0.23 -2.09 16
5 C -0.15 -2.63 2.22 -156.81 -0.35 -2.98 16
6 C 0.53 9.13 7.32 36.01 0.26 9.40 16
7 O -0.51 -9.08 15.03 -18.75 -0.28 -9.36 16
8 O -0.49 -7.81 13.42 -39.26 -0.53 -8.34 16
9 C 0.58 11.89 6.52 -10.98 -0.07 11.82 16
10 O -0.55 -12.61 16.50 5.56 0.09 -12.51 16
11 N -0.62 -12.92 3.69 -185.37 -0.68 -13.61 16
12 C 0.07 1.53 7.32 -8.64 -0.06 1.46 16
13 C 0.24 5.63 1.57 -91.39 -0.14 5.49 16
14 O -0.57 -14.42 13.54 -35.23 -0.48 -14.89 16
15 C -0.53 -12.94 8.69 -34.44 -0.30 -13.24 16
16 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16
17 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16
18 N -0.90 -22.09 11.01 55.43 0.61 -21.47 16
19 Si 0.91 18.90 29.54 -169.99 -5.02 13.88 16
20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16
21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16
22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16
23 C 0.11 2.29 8.04 -8.50 -0.07 2.22 16
24 H 0.08 1.15 6.80 -51.93 -0.35 0.80 16
25 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16
26 H 0.05 0.67 7.88 -51.93 -0.41 0.26 16
27 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16
28 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16
29 H 0.08 1.20 7.20 -51.93 -0.37 0.82 16
30 H 0.11 1.50 8.05 -51.93 -0.42 1.08 16
31 H 0.11 1.30 8.05 -51.93 -0.42 0.88 16
32 H 0.41 4.40 9.10 45.56 0.41 4.82 16
33 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16
34 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16
35 H 0.39 10.09 6.32 45.56 0.29 10.38 16
36 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16
37 H 0.09 1.68 8.10 -51.93 -0.42 1.25 16
38 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16
LS Contribution 325.23 15.07 4.90 4.90
Total: -1.00 -29.68 325.23 -5.97 -35.65
By element:
Atomic # 1 Polarization: 19.48 SS G_CDS: -3.73 Total: 15.75 kcal
Atomic # 6 Polarization: 10.86 SS G_CDS: -0.85 Total: 10.01 kcal
Atomic # 7 Polarization: -35.01 SS G_CDS: -0.07 Total: -35.08 kcal
Atomic # 8 Polarization: -43.91 SS G_CDS: -1.19 Total: -45.10 kcal
Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -29.68 -5.97 -35.65 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603322282.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.713 kcal
(2) G-P(sol) polarization free energy of solvation -29.680 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.360 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds