Wall clock time and date at job start Tue Mar 31 2020 02:07:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52999 * 115.55686 * 2 1
4 4 C 1.53002 * 117.49935 * 214.31692 * 2 1 3
5 5 C 1.52996 * 117.50254 * 145.69465 * 2 1 3
6 6 C 1.50702 * 117.51672 * 0.02562 * 5 2 1
7 7 O 1.20830 * 120.00198 * 327.39605 * 6 5 2
8 8 O 1.34231 * 119.99983 * 147.39449 * 6 5 2
9 9 C 1.50706 * 117.49949 * 214.98142 * 5 2 1
10 10 O 1.21282 * 119.99598 * 56.34858 * 9 5 2
11 11 N 1.34776 * 119.99754 * 236.63040 * 9 5 2
12 12 C 1.47063 * 136.05738 * 4.51637 * 11 9 5
13 13 C 1.53245 * 88.08360 * 207.20891 * 12 11 9
14 14 O 1.42894 * 114.19713 * 87.72551 * 13 12 11
15 15 C 1.50697 * 114.32815 * 220.47526 * 13 12 11
16 16 H 1.07998 * 120.00427 * 93.75594 * 15 13 12
17 17 C 1.37881 * 119.99983 * 273.76061 * 15 13 12
18 18 N 1.31514 * 119.99721 * 359.97438 * 17 15 13
19 19 Si 1.86793 * 120.00103 * 180.02562 * 17 15 13
20 20 H 1.48497 * 109.47402 * 359.97438 * 19 17 15
21 21 H 1.48499 * 109.47239 * 119.99820 * 19 17 15
22 22 H 1.48503 * 109.46828 * 239.99416 * 19 17 15
23 23 C 1.47066 * 136.05465 * 184.89663 * 11 9 5
24 24 H 1.08998 * 109.47176 * 274.30437 * 1 2 3
25 25 H 1.08995 * 109.47748 * 34.30619 * 1 2 3
26 26 H 1.09002 * 109.47238 * 154.30989 * 1 2 3
27 27 H 1.08999 * 109.47068 * 205.68647 * 3 2 1
28 28 H 1.09002 * 109.47556 * 325.69410 * 3 2 1
29 29 H 1.09003 * 109.46651 * 85.69555 * 3 2 1
30 30 H 1.09005 * 117.49436 * 145.01702 * 4 2 1
31 31 H 1.08997 * 117.49736 * 359.97438 * 4 2 1
32 32 H 0.96699 * 117.00079 * 174.98025 * 8 6 5
33 33 H 1.08998 * 113.46726 * 321.94047 * 12 11 9
34 34 H 1.08996 * 113.46711 * 92.38110 * 12 11 9
35 35 H 0.96703 * 113.99644 * 86.30740 * 14 13 12
36 36 H 0.96997 * 120.00131 * 180.02562 * 18 17 15
37 37 H 1.08999 * 113.46332 * 267.62060 * 23 11 9
38 38 H 1.08999 * 113.46714 * 38.05763 * 23 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1900 1.3803 0.0000
4 6 2.2365 -1.1209 -0.7651
5 6 2.2365 -1.1210 0.7648
6 6 1.3725 -2.1413 1.4603
7 8 0.3037 -1.8153 1.9199
8 8 1.7904 -3.4123 1.5690
9 6 3.5294 -0.7811 1.4607
10 8 3.5618 0.1173 2.2748
11 7 4.6507 -1.4718 1.1742
12 6 5.0300 -2.5278 0.2235
13 6 6.1050 -2.9694 1.2224
14 8 5.6487 -3.9105 2.1960
15 6 7.4182 -3.3545 0.5913
16 1 8.2060 -2.6222 0.4942
17 6 7.6139 -4.6418 0.1378
18 7 6.6547 -5.5337 0.2564
19 14 9.2418 -5.1193 -0.6438
20 1 10.1481 -3.9431 -0.6580
21 1 9.8650 -6.2154 0.1407
22 1 9.0064 -5.5791 -2.0361
23 6 6.0315 -1.5058 1.6791
24 1 -0.3633 0.0771 1.0247
25 1 -0.3634 0.8488 -0.5792
26 1 -0.3634 -0.9261 -0.4455
27 1 3.1823 1.3085 -0.4454
28 1 1.5810 2.0744 -0.5792
29 1 2.2772 1.7413 1.0248
30 1 3.1716 -0.8749 -1.2684
31 1 1.6112 -1.8586 -1.2681
32 1 1.2379 -4.0132 2.0874
33 1 4.2502 -3.2736 0.0694
34 1 5.4378 -2.1440 -0.7116
35 1 5.6963 -4.8316 1.9052
36 1 6.7924 -6.4394 -0.0623
37 1 6.7087 -0.8469 1.1356
38 1 6.1015 -1.3843 2.7601
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001603322282.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:07:08
Heat of formation + Delta-G solvation = -130.097253 kcal
Electronic energy + Delta-G solvation = -23619.035805 eV
Core-core repulsion = 20042.175398 eV
Total energy + Delta-G solvation = -3576.860406 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.130 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-42.29209 -40.98766 -39.60821 -38.22702 -37.13749 -35.87651 -34.08642 -31.55126
-30.02766 -28.54598 -27.37381 -26.82410 -26.28914 -23.47317 -21.86798 -20.65956
-19.76304 -19.37662 -18.99172 -18.22739 -17.49197 -17.16279 -16.95332 -16.15624
-15.96526 -15.86019 -15.31138 -14.95953 -14.74794 -14.57054 -14.42410 -13.93312
-13.89591 -13.65339 -13.38267 -13.15374 -12.87969 -12.78308 -12.72718 -12.68420
-12.36040 -12.20791 -12.17266 -12.08620 -11.45718 -11.28669 -11.07983 -10.85182
-10.61283 -10.18430 -9.62787 -8.24647 -6.41489 0.74122 1.36725 1.47858
1.53225 1.62859 1.73554 2.04789 2.33215 2.42965 2.96779 3.20943
3.40374 3.48876 3.74609 3.95597 3.97640 4.18022 4.33007 4.44429
4.59578 4.62338 4.70123 4.72613 4.79033 4.89314 4.90142 4.92590
4.97767 5.00703 5.19509 5.26579 5.29426 5.47322 5.76181 5.93717
6.64397 6.74691 6.82700 7.00814 7.32432 7.53425 8.81602
Molecular weight = 283.13amu
Principal moments of inertia in cm(-1)
A = 0.025442 B = 0.005168 C = 0.004925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1100.284271 B = 5416.910138 C = 5684.004293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.056 4.056
3 C -0.117 4.117
4 C -0.115 4.115
5 C -0.188 4.188
6 C 0.531 3.469
7 O -0.518 6.518
8 O -0.502 6.502
9 C 0.577 3.423
10 O -0.580 6.580
11 N -0.623 5.623
12 C 0.092 3.908
13 C 0.220 3.780
14 O -0.585 6.585
15 C -0.550 4.550
16 H 0.075 0.925
17 C 0.034 3.966
18 N -0.915 5.915
19 Si 0.969 3.031
20 H -0.267 1.267
21 H -0.284 1.284
22 H -0.276 1.276
23 C 0.106 3.894
24 H 0.059 0.941
25 H 0.093 0.907
26 H 0.061 0.939
27 H 0.055 0.945
28 H 0.100 0.900
29 H 0.052 0.948
30 H 0.119 0.881
31 H 0.130 0.870
32 H 0.429 0.571
33 H 0.064 0.936
34 H 0.098 0.902
35 H 0.389 0.611
36 H 0.276 0.724
37 H 0.108 0.892
38 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.208 5.181 -6.347 11.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.057 4.057
3 C -0.174 4.174
4 C -0.152 4.152
5 C -0.192 4.192
6 C 0.373 3.627
7 O -0.408 6.408
8 O -0.315 6.315
9 C 0.366 3.634
10 O -0.461 6.461
11 N -0.354 5.354
12 C -0.030 4.030
13 C 0.179 3.821
14 O -0.398 6.398
15 C -0.588 4.588
16 H 0.093 0.907
17 C -0.166 4.166
18 N -0.556 5.556
19 Si 0.794 3.206
20 H -0.191 1.191
21 H -0.210 1.210
22 H -0.202 1.202
23 C -0.016 4.016
24 H 0.078 0.922
25 H 0.112 0.888
26 H 0.080 0.920
27 H 0.074 0.926
28 H 0.119 0.881
29 H 0.071 0.929
30 H 0.137 0.863
31 H 0.148 0.852
32 H 0.291 0.709
33 H 0.083 0.917
34 H 0.116 0.884
35 H 0.245 0.755
36 H 0.086 0.914
37 H 0.126 0.874
38 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -8.577 6.434 -5.676 12.132
hybrid contribution 0.592 -1.558 0.205 1.679
sum -7.985 4.876 -5.471 10.839
Atomic orbital electron populations
1.21488 0.89130 1.03331 1.02976 1.21988 0.96708 0.90990 0.95969
1.21463 1.00249 0.93166 1.02549 1.23689 1.04015 1.00715 0.86773
1.21004 0.96555 1.03215 0.98399 1.21638 0.83618 0.81727 0.75760
1.90655 1.23616 1.80668 1.45817 1.84616 1.56645 1.20871 1.69400
1.18719 0.82782 0.80209 0.81728 1.90627 1.85916 1.32291 1.37262
1.49664 1.09160 1.38321 1.38278 1.23966 0.97493 0.86877 0.94682
1.19745 0.91340 0.85382 0.85679 1.86032 1.87753 1.22050 1.43946
1.21666 1.00000 0.97400 1.39736 0.90679 1.25731 1.00076 0.95941
0.94888 1.69337 1.33883 1.04951 1.47435 0.85336 0.79203 0.78140
0.77906 1.19078 1.21027 1.20198 1.23439 0.80932 0.97872 0.99368
0.92166 0.88793 0.92041 0.92633 0.88148 0.92932 0.86281 0.85213
0.70907 0.91703 0.88422 0.75491 0.91397 0.87402 0.92944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.53 8.26 71.98 0.59 -1.93 16
2 C -0.06 -1.46 2.69 -52.18 -0.14 -1.60 16
3 C -0.12 -2.91 8.70 71.98 0.63 -2.29 16
4 C -0.12 -2.87 8.68 30.59 0.27 -2.60 16
5 C -0.19 -6.23 2.22 -53.67 -0.12 -6.35 16
6 C 0.53 17.90 7.32 71.24 0.52 18.42 16
7 O -0.52 -18.31 15.03 21.95 0.33 -17.98 16
8 O -0.50 -15.53 13.42 -51.43 -0.69 -16.22 16
9 C 0.58 23.58 6.52 87.66 0.57 24.15 16
10 O -0.58 -27.08 16.50 -3.04 -0.05 -27.13 16
11 N -0.62 -25.62 3.69 -859.24 -3.17 -28.79 16
12 C 0.09 3.75 7.32 83.10 0.61 4.36 16
13 C 0.22 10.23 1.57 -11.29 -0.02 10.21 16
14 O -0.58 -30.00 13.54 -148.98 -2.02 -32.01 16
15 C -0.55 -26.31 8.69 25.60 0.22 -26.08 16
16 H 0.08 3.47 7.81 -2.91 -0.02 3.45 16
17 C 0.03 1.62 5.39 84.66 0.46 2.08 16
18 N -0.92 -44.67 11.01 21.45 0.24 -44.44 16
19 Si 0.97 37.93 29.54 68.60 2.03 39.96 16
20 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16
21 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16
22 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16
23 C 0.11 4.52 8.04 83.18 0.67 5.19 16
24 H 0.06 1.63 6.80 -2.39 -0.02 1.62 16
25 H 0.09 1.54 7.92 -2.39 -0.02 1.52 16
26 H 0.06 1.30 7.88 -2.39 -0.02 1.28 16
27 H 0.05 1.40 7.90 -2.39 -0.02 1.38 16
28 H 0.10 1.78 7.92 -2.39 -0.02 1.76 16
29 H 0.05 1.59 7.20 -2.39 -0.02 1.57 16
30 H 0.12 2.83 8.05 -2.38 -0.02 2.81 16
31 H 0.13 2.67 8.05 -2.39 -0.02 2.66 16
32 H 0.43 8.93 9.10 -74.06 -0.67 8.25 16
33 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16
34 H 0.10 3.61 8.10 -2.39 -0.02 3.59 16
35 H 0.39 20.25 6.32 -74.06 -0.47 19.78 16
36 H 0.28 12.73 8.31 -92.71 -0.77 11.96 16
37 H 0.11 4.08 8.10 -2.39 -0.02 4.06 16
38 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16
Total: -1.00 -63.12 325.23 0.88 -62.24
By element:
Atomic # 1 Polarization: 40.86 SS G_CDS: -0.04 Total: 40.82 kcal
Atomic # 6 Polarization: 19.29 SS G_CDS: 4.26 Total: 23.55 kcal
Atomic # 7 Polarization: -70.29 SS G_CDS: -2.94 Total: -73.23 kcal
Atomic # 8 Polarization: -90.92 SS G_CDS: -2.43 Total: -93.34 kcal
Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal
Total: -63.12 0.88 -62.24 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603322282.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.858 kcal
(2) G-P(sol) polarization free energy of solvation -63.121 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds