Wall clock time and date at job start Tue Mar 31 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33689 * 126.27706 * 2 1 4 4 C 1.30616 * 108.99790 * 179.97438 * 3 2 1 5 5 O 1.33668 * 109.15138 * 359.97438 * 4 3 2 6 6 C 1.35335 * 107.68521 * 359.97438 * 5 4 3 7 7 C 1.46729 * 126.64387 * 179.97438 * 6 5 4 8 8 O 1.21679 * 120.00259 * 173.79607 * 7 6 5 9 9 N 1.34776 * 119.99516 * 353.78961 * 7 6 5 10 10 C 1.46503 * 120.00176 * 4.40430 * 9 7 6 11 11 C 1.52997 * 109.47227 * 83.67923 * 10 9 7 12 12 O 1.42893 * 109.47378 * 64.99980 * 11 10 9 13 13 C 1.46507 * 119.99856 * 184.39522 * 9 7 6 14 14 C 1.52997 * 109.46731 * 90.00317 * 13 9 7 15 15 N 1.46499 * 109.46844 * 180.02562 * 14 13 9 16 16 C 1.36942 * 120.00143 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99512 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00286 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00015 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00132 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46926 * 59.99802 * 20 18 16 22 22 H 1.48499 * 109.46987 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46993 * 299.99822 * 20 18 16 24 24 H 1.09000 * 109.46599 * 270.02728 * 1 2 3 25 25 H 1.08999 * 109.46620 * 30.02386 * 1 2 3 26 26 H 1.08995 * 109.47157 * 150.02296 * 1 2 3 27 27 H 1.07995 * 125.42116 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.46789 * 203.67446 * 10 9 7 29 29 H 1.09000 * 109.46828 * 323.67301 * 10 9 7 30 30 H 1.09003 * 109.46587 * 184.99934 * 11 10 9 31 31 H 1.08997 * 109.46815 * 304.99310 * 11 10 9 32 32 H 0.96701 * 113.99762 * 179.97438 * 12 11 10 33 33 H 1.08993 * 109.47191 * 210.00558 * 13 9 7 34 34 H 1.09002 * 109.46575 * 330.00538 * 13 9 7 35 35 H 1.08993 * 109.47479 * 300.00063 * 14 13 9 36 36 H 1.09001 * 109.47439 * 60.00178 * 14 13 9 37 37 H 0.96996 * 120.00184 * 359.97438 * 15 14 13 38 38 H 0.97005 * 120.00322 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 0.0006 5 8 3.5890 -0.6462 0.0015 6 6 2.3137 -1.0992 0.0021 7 6 1.8826 -2.5017 0.0026 8 8 0.7025 -2.7755 0.1170 9 7 2.7938 -3.4868 -0.1237 10 6 4.2219 -3.1627 -0.1645 11 6 4.7525 -3.0157 1.2630 12 8 4.6696 -4.2746 1.9340 13 6 2.3560 -4.8816 -0.2200 14 6 2.1351 -5.2464 -1.6893 15 7 1.6968 -6.6409 -1.7856 16 6 1.4363 -7.1937 -3.0111 17 1 1.5536 -6.6014 -3.9066 18 6 1.0215 -8.5152 -3.1024 19 7 0.8791 -9.2372 -2.0112 20 14 0.6654 -9.2691 -4.7741 21 1 1.8913 -9.2191 -5.6108 22 1 0.2427 -10.6819 -4.6000 23 1 -0.4201 -8.5055 -5.4403 24 1 -0.3632 0.0005 1.0277 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5134 27 1 4.4044 1.3442 0.0011 28 1 4.7615 -3.9624 -0.6721 29 1 4.3669 -2.2269 -0.7043 30 1 5.7917 -2.6881 1.2323 31 1 4.1548 -2.2783 1.7986 32 1 4.9902 -4.2559 2.8461 33 1 3.1201 -5.5323 0.2051 34 1 1.4236 -5.0085 0.3301 35 1 1.3711 -4.5956 -2.1144 36 1 3.0676 -5.1194 -2.2394 37 1 1.5919 -7.1730 -0.9814 38 1 0.5888 -10.1606 -2.0749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672599859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:53 Heat of formation + Delta-G solvation = -36.924285 kcal Electronic energy + Delta-G solvation = -22639.720956 eV Core-core repulsion = 19099.193584 eV Total energy + Delta-G solvation = -3540.527372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.70409 -39.78456 -37.36373 -35.92949 -35.33251 -34.25735 -32.00909 -31.30525 -29.52835 -28.55137 -27.01688 -24.39502 -23.48541 -23.00260 -22.04393 -21.20815 -19.77896 -17.81240 -17.59977 -17.21155 -17.14177 -16.66823 -16.10188 -15.25289 -14.87571 -14.69188 -14.41452 -13.95499 -13.67615 -13.44905 -13.28094 -13.23728 -13.16712 -12.77242 -12.46829 -12.26296 -11.66195 -11.30651 -11.23050 -11.05380 -10.89327 -10.85076 -10.60561 -10.30271 -10.11658 -10.02766 -9.69804 -9.18888 -8.83315 -8.56605 -6.89626 -5.72047 -3.01473 0.65087 2.21128 2.23509 2.96543 3.04754 3.47783 3.51613 3.53177 3.78224 4.07007 4.36541 4.53789 4.64683 4.92614 4.95006 5.11301 5.11848 5.25861 5.37624 5.54795 5.57015 5.62100 5.69408 5.74114 5.81902 5.91501 6.06416 6.14925 6.20131 6.51403 6.73779 6.90747 7.22763 7.38566 7.49086 7.73105 8.02378 8.46229 9.57122 10.13308 10.48746 11.50742 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.004033 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.454050 B = 6940.543988 C = 7677.897826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.076 3.924 3 N -0.492 5.492 4 C 0.188 3.812 5 O -0.189 6.189 6 C -0.105 4.105 7 C 0.600 3.400 8 O -0.505 6.505 9 N -0.586 5.586 10 C 0.103 3.897 11 C 0.064 3.936 12 O -0.563 6.563 13 C 0.112 3.888 14 C 0.142 3.858 15 N -0.729 5.729 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.286 1.286 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.254 0.746 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.377 0.623 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.021 0.979 36 H 0.018 0.982 37 H 0.385 0.615 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.940 20.657 8.454 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 N -0.221 5.221 4 C -0.037 4.037 5 O -0.076 6.076 6 C -0.160 4.160 7 C 0.386 3.614 8 O -0.382 6.382 9 N -0.317 5.317 10 C -0.020 4.020 11 C -0.015 4.015 12 O -0.368 6.368 13 C -0.009 4.009 14 C 0.014 3.986 15 N -0.374 5.374 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.269 0.731 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.224 0.776 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.035 0.965 37 H 0.218 0.782 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.906 20.842 7.755 23.955 hybrid contribution 0.616 -0.835 -0.130 1.045 sum 9.522 20.007 7.625 23.433 Atomic orbital electron populations 1.20387 0.85269 1.04400 1.03756 1.22063 0.98438 0.86299 0.97971 1.70342 1.01359 1.31559 1.18869 1.28337 0.97614 0.80098 0.97625 1.84696 1.29664 1.23893 1.69328 1.23115 0.81147 0.96463 1.15270 1.16476 0.85743 0.81301 0.77893 1.90897 1.15841 1.81369 1.50070 1.47687 1.05860 1.07426 1.70728 1.21916 0.81093 1.03260 0.95752 1.22624 0.99237 0.85928 0.93706 1.86582 1.88178 1.31866 1.30216 1.21814 1.01865 0.78462 0.98789 1.20923 0.96897 0.88142 0.92675 1.42182 1.81336 1.07031 1.06828 1.19157 1.37916 0.94406 0.85552 0.91280 1.24741 1.02340 0.96690 0.97105 1.69657 1.53475 1.08736 1.26277 0.86242 0.78071 0.78229 0.83485 1.21289 1.21634 1.21235 0.89956 0.90537 0.88589 0.73062 0.88474 0.88232 0.92636 0.93897 0.77630 0.89274 0.89499 0.96089 0.96465 0.78158 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 9.81 36.01 0.35 -0.59 16 2 C 0.08 0.97 7.16 -82.46 -0.59 0.38 16 3 N -0.49 -5.53 11.26 -10.88 -0.12 -5.66 16 4 C 0.19 1.46 13.21 52.25 0.69 2.15 16 5 O -0.19 -1.84 6.50 4.44 0.03 -1.81 16 6 C -0.11 -1.38 6.58 -36.84 -0.24 -1.62 16 7 C 0.60 9.56 7.59 -12.83 -0.10 9.46 16 8 O -0.50 -9.55 14.43 5.21 0.08 -9.47 16 9 N -0.59 -8.89 2.43 -175.21 -0.43 -9.32 16 10 C 0.10 1.19 5.37 -4.04 -0.02 1.16 16 11 C 0.06 0.61 6.84 37.16 0.25 0.87 16 12 O -0.56 -6.28 13.27 -35.23 -0.47 -6.75 16 13 C 0.11 2.05 5.52 -4.04 -0.02 2.02 16 14 C 0.14 3.09 6.58 -4.04 -0.03 3.07 16 15 N -0.73 -19.45 5.60 -59.91 -0.34 -19.79 16 16 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 17 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 20 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.10 1.27 6.62 -51.93 -0.34 0.93 16 27 H 0.25 0.50 8.06 -52.49 -0.42 0.08 16 28 H 0.10 1.15 8.02 -51.93 -0.42 0.73 16 29 H 0.10 0.99 5.36 -51.93 -0.28 0.71 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.42 7.33 -51.93 -0.38 0.04 16 32 H 0.38 2.48 9.12 45.56 0.42 2.90 16 33 H 0.09 1.60 7.74 -51.93 -0.40 1.20 16 34 H 0.09 1.73 7.36 -51.93 -0.38 1.34 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -36.44 325.71 -4.77 -41.21 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.18 Total: 7.62 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 0.05 Total: 9.30 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.16 Total: -62.92 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.36 Total: -18.03 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.44 -4.77 -41.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672599859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.285 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds