Wall clock time and date at job start Tue Mar 31 2020 02:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33689 * 126.27706 * 2 1 4 4 C 1.30616 * 108.99790 * 179.97438 * 3 2 1 5 5 O 1.33668 * 109.15138 * 359.97438 * 4 3 2 6 6 C 1.35335 * 107.68521 * 359.97438 * 5 4 3 7 7 C 1.46729 * 126.64387 * 179.97438 * 6 5 4 8 8 O 1.21679 * 120.00259 * 173.79607 * 7 6 5 9 9 N 1.34776 * 119.99516 * 353.78961 * 7 6 5 10 10 C 1.46503 * 120.00176 * 4.40430 * 9 7 6 11 11 C 1.52997 * 109.47227 * 83.67923 * 10 9 7 12 12 O 1.42893 * 109.47378 * 64.99980 * 11 10 9 13 13 C 1.46507 * 119.99856 * 184.39522 * 9 7 6 14 14 C 1.52997 * 109.46731 * 90.00317 * 13 9 7 15 15 N 1.46499 * 109.46844 * 180.02562 * 14 13 9 16 16 C 1.36942 * 120.00143 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99512 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00286 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00015 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00132 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46926 * 59.99802 * 20 18 16 22 22 H 1.48499 * 109.46987 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46993 * 299.99822 * 20 18 16 24 24 H 1.09000 * 109.46599 * 270.02728 * 1 2 3 25 25 H 1.08999 * 109.46620 * 30.02386 * 1 2 3 26 26 H 1.08995 * 109.47157 * 150.02296 * 1 2 3 27 27 H 1.07995 * 125.42116 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.46789 * 203.67446 * 10 9 7 29 29 H 1.09000 * 109.46828 * 323.67301 * 10 9 7 30 30 H 1.09003 * 109.46587 * 184.99934 * 11 10 9 31 31 H 1.08997 * 109.46815 * 304.99310 * 11 10 9 32 32 H 0.96701 * 113.99762 * 179.97438 * 12 11 10 33 33 H 1.08993 * 109.47191 * 210.00558 * 13 9 7 34 34 H 1.09002 * 109.46575 * 330.00538 * 13 9 7 35 35 H 1.08993 * 109.47479 * 300.00063 * 14 13 9 36 36 H 1.09001 * 109.47439 * 60.00178 * 14 13 9 37 37 H 0.96996 * 120.00184 * 359.97438 * 15 14 13 38 38 H 0.97005 * 120.00322 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 0.0006 5 8 3.5890 -0.6462 0.0015 6 6 2.3137 -1.0992 0.0021 7 6 1.8826 -2.5017 0.0026 8 8 0.7025 -2.7755 0.1170 9 7 2.7938 -3.4868 -0.1237 10 6 4.2219 -3.1627 -0.1645 11 6 4.7525 -3.0157 1.2630 12 8 4.6696 -4.2746 1.9340 13 6 2.3560 -4.8816 -0.2200 14 6 2.1351 -5.2464 -1.6893 15 7 1.6968 -6.6409 -1.7856 16 6 1.4363 -7.1937 -3.0111 17 1 1.5536 -6.6014 -3.9066 18 6 1.0215 -8.5152 -3.1024 19 7 0.8791 -9.2372 -2.0112 20 14 0.6654 -9.2691 -4.7741 21 1 1.8913 -9.2191 -5.6108 22 1 0.2427 -10.6819 -4.6000 23 1 -0.4201 -8.5055 -5.4403 24 1 -0.3632 0.0005 1.0277 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5134 27 1 4.4044 1.3442 0.0011 28 1 4.7615 -3.9624 -0.6721 29 1 4.3669 -2.2269 -0.7043 30 1 5.7917 -2.6881 1.2323 31 1 4.1548 -2.2783 1.7986 32 1 4.9902 -4.2559 2.8461 33 1 3.1201 -5.5323 0.2051 34 1 1.4236 -5.0085 0.3301 35 1 1.3711 -4.5956 -2.1144 36 1 3.0676 -5.1194 -2.2394 37 1 1.5919 -7.1730 -0.9814 38 1 0.5888 -10.1606 -2.0749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672599859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:52 Heat of formation + Delta-G solvation = -68.581148 kcal Electronic energy + Delta-G solvation = -22641.093701 eV Core-core repulsion = 19099.193584 eV Total energy + Delta-G solvation = -3541.900117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.52176 -40.99472 -38.33641 -37.17796 -36.50364 -35.77799 -33.58931 -32.62388 -30.82430 -29.71595 -28.35077 -25.94422 -24.74393 -23.93624 -23.45630 -22.42916 -20.89018 -19.28261 -18.72869 -18.46234 -18.03269 -17.57191 -17.35834 -16.67994 -16.25524 -15.75862 -15.66874 -15.34739 -15.13344 -15.07026 -14.70981 -14.34126 -14.21953 -14.02729 -13.49157 -13.22192 -13.09326 -12.90012 -12.77615 -12.53992 -12.28602 -12.17198 -12.11358 -11.90357 -11.80771 -11.32986 -10.98771 -10.92287 -10.18630 -9.75181 -9.08280 -7.97670 -5.29328 -0.25385 1.30874 1.40108 1.46253 1.50516 1.56733 1.86832 1.95872 2.55577 3.13574 3.34874 3.35798 3.41137 3.65074 4.02269 4.05519 4.07971 4.20663 4.28658 4.33486 4.40240 4.48467 4.53789 4.61421 4.64441 4.76746 4.81918 4.97617 5.02854 5.07718 5.30867 5.36493 5.45999 6.12451 6.22925 6.51271 6.83055 6.91442 7.29174 7.99700 8.25994 9.25526 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.004033 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.454050 B = 6940.543988 C = 7677.897826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.075 3.925 3 N -0.523 5.523 4 C 0.228 3.772 5 O -0.183 6.183 6 C -0.129 4.129 7 C 0.596 3.404 8 O -0.550 6.550 9 N -0.586 5.586 10 C 0.096 3.904 11 C 0.069 3.931 12 O -0.592 6.592 13 C 0.133 3.867 14 C 0.149 3.851 15 N -0.742 5.742 16 C -0.254 4.254 17 H 0.074 0.926 18 C -0.071 4.071 19 N -0.968 5.968 20 Si 0.979 3.021 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.279 1.279 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.313 0.687 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.395 0.605 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.004 0.996 36 H 0.028 0.972 37 H 0.376 0.624 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.121 22.687 7.992 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 N -0.252 5.252 4 C 0.004 3.996 5 O -0.070 6.070 6 C -0.184 4.184 7 C 0.384 3.616 8 O -0.430 6.430 9 N -0.317 5.317 10 C -0.026 4.026 11 C -0.009 4.009 12 O -0.400 6.400 13 C 0.010 3.990 14 C 0.022 3.978 15 N -0.385 5.385 16 C -0.386 4.386 17 H 0.092 0.908 18 C -0.264 4.264 19 N -0.617 5.617 20 Si 0.807 3.193 21 H -0.199 1.199 22 H -0.217 1.217 23 H -0.205 1.205 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.327 0.673 28 H 0.112 0.888 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.059 0.941 32 H 0.245 0.755 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.022 0.978 36 H 0.046 0.954 37 H 0.208 0.792 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.133 22.927 7.301 26.512 hybrid contribution 0.033 -1.296 0.048 1.298 sum 11.166 21.630 7.349 25.428 Atomic orbital electron populations 1.20360 0.85453 1.03983 1.04025 1.22229 0.98853 0.86861 0.96862 1.70396 1.02652 1.31073 1.21087 1.29711 0.98149 0.79472 0.92271 1.84671 1.27811 1.24939 1.69550 1.22373 0.82588 0.94865 1.18590 1.16811 0.85240 0.82564 0.76966 1.90864 1.17613 1.82437 1.52048 1.47707 1.07584 1.05872 1.70500 1.22240 0.78602 1.03998 0.97761 1.22627 1.01049 0.85291 0.91982 1.86528 1.88677 1.32927 1.31882 1.21329 1.01049 0.80752 0.95899 1.20949 0.96274 0.85436 0.95178 1.42362 1.81551 1.08727 1.05896 1.19559 1.37587 0.94905 0.86536 0.90843 1.25636 1.02528 0.97177 1.01017 1.69822 1.54548 1.08839 1.28529 0.85139 0.78242 0.76958 0.78952 1.19944 1.21687 1.20537 0.89365 0.89020 0.90797 0.67276 0.88831 0.86312 0.89018 0.94083 0.75513 0.88858 0.91790 0.97832 0.95368 0.79227 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.81 71.24 0.70 -1.22 16 2 C 0.08 1.85 7.16 41.84 0.30 2.15 16 3 N -0.52 -10.34 11.26 -303.12 -3.41 -13.75 16 4 C 0.23 2.53 13.21 130.42 1.72 4.25 16 5 O -0.18 -2.97 6.50 -7.02 -0.05 -3.02 16 6 C -0.13 -3.26 6.58 24.05 0.16 -3.11 16 7 C 0.60 19.40 7.59 86.46 0.66 20.06 16 8 O -0.55 -21.98 14.43 -4.28 -0.06 -22.04 16 9 N -0.59 -17.90 2.43 -826.47 -2.01 -19.91 16 10 C 0.10 2.05 5.37 86.38 0.46 2.51 16 11 C 0.07 1.15 6.84 71.98 0.49 1.64 16 12 O -0.59 -12.37 13.27 -148.98 -1.98 -14.35 16 13 C 0.13 5.00 5.52 86.38 0.48 5.48 16 14 C 0.15 6.67 6.58 86.38 0.57 7.24 16 15 N -0.74 -40.67 5.60 -343.46 -1.92 -42.59 16 16 C -0.25 -15.00 9.99 84.03 0.84 -14.16 16 17 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16 18 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 19 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 20 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 2.08 6.62 -2.39 -0.02 2.07 16 27 H 0.31 -0.85 8.06 -2.91 -0.02 -0.87 16 28 H 0.09 2.07 8.02 -2.38 -0.02 2.05 16 29 H 0.12 2.05 5.36 -2.39 -0.01 2.04 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.71 7.33 -2.39 -0.02 0.69 16 32 H 0.40 4.59 9.12 -74.06 -0.68 3.92 16 33 H 0.09 3.42 7.74 -2.39 -0.02 3.40 16 34 H 0.06 2.70 7.36 -2.39 -0.02 2.68 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.38 21.62 7.67 -92.71 -0.71 20.91 16 38 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -81.25 325.71 -0.56 -81.81 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.28 Total: 24.06 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.84 Total: 21.09 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -7.07 Total: -136.87 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -2.08 Total: -39.41 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -81.25 -0.56 -81.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672599859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.233 kcal (2) G-P(sol) polarization free energy of solvation -81.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds