Wall clock time and date at job start Tue Mar 31 2020 02:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47660 * 2 1 4 4 N 1.29931 * 125.37851 * 90.34993 * 3 2 1 5 5 C 1.36070 * 108.47893 * 180.16985 * 4 3 2 6 6 C 1.47419 * 126.44892 * 179.82429 * 5 4 3 7 7 O 1.21612 * 119.99710 * 179.68481 * 6 5 4 8 8 N 1.34779 * 120.00078 * 359.68783 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.47142 * 294.99240 * 10 9 8 12 12 C 1.53002 * 109.46776 * 174.99842 * 10 9 8 13 13 O 1.42895 * 109.47504 * 304.99727 * 12 10 9 14 14 N 1.46496 * 109.47449 * 54.99576 * 10 9 8 15 15 C 1.36941 * 120.00198 * 204.99613 * 14 10 9 16 16 H 1.07996 * 119.99379 * 0.02562 * 15 14 10 17 17 C 1.38810 * 119.99828 * 180.02562 * 15 14 10 18 18 N 1.31617 * 120.00148 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99611 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47352 * 60.00616 * 19 17 15 21 21 H 1.48502 * 109.47208 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47642 * 300.00345 * 19 17 15 23 23 C 1.36096 * 107.09998 * 359.55995 * 5 4 3 24 24 O 1.34050 * 125.37637 * 270.03237 * 3 2 1 25 25 H 1.09003 * 109.46806 * 299.99893 * 1 2 3 26 26 H 1.09001 * 109.47492 * 59.99558 * 1 2 3 27 27 H 1.08999 * 109.47555 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46806 * 240.00107 * 2 1 3 29 29 H 1.09001 * 109.47492 * 120.00442 * 2 1 3 30 30 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 32 32 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 33 33 H 1.09001 * 109.46966 * 65.00241 * 12 10 9 34 34 H 1.09007 * 109.46935 * 184.99698 * 12 10 9 35 35 H 0.96700 * 114.00507 * 180.02562 * 13 12 10 36 36 H 0.97002 * 119.99429 * 25.00168 * 14 10 9 37 37 H 0.97004 * 120.00027 * 179.97438 * 18 17 15 38 38 H 1.07994 * 126.52022 * 180.28305 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2893 2.1278 1.0594 5 6 2.7175 3.3573 0.6639 6 6 3.1122 4.4722 1.5439 7 8 3.4843 5.5249 1.0619 8 7 3.0608 4.3248 2.8826 9 6 3.4526 5.4330 3.7571 10 6 3.3033 5.0063 5.2188 11 1 2.2513 4.8238 5.4385 12 6 3.8293 6.1169 6.1304 13 8 5.1730 6.4370 5.7647 14 7 4.0705 3.7800 5.4504 15 6 3.7173 2.9330 6.4668 16 1 2.8728 3.1689 7.0972 17 6 4.4446 1.7713 6.6865 18 7 5.4741 1.4842 5.9184 19 14 3.9622 0.6155 8.0724 20 1 2.5743 0.1340 7.8550 21 1 4.8898 -0.5439 8.0956 22 1 4.0385 1.3371 9.3680 23 6 2.7185 3.3621 -0.6971 24 8 2.2906 2.1526 -1.0930 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.7638 3.4852 3.2670 31 1 2.8125 6.2935 3.5621 32 1 4.4909 5.7007 3.5613 33 1 3.2027 7.0023 6.0230 34 1 3.8055 5.7784 7.1663 35 1 5.5715 7.1350 6.3024 36 1 4.8289 3.5682 4.8839 37 1 5.9826 0.6726 6.0722 38 1 3.0086 4.1825 -1.3367 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676524489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:15 Heat of formation + Delta-G solvation = -57.455379 kcal Electronic energy + Delta-G solvation = -22214.133879 eV Core-core repulsion = 18672.716211 eV Total energy + Delta-G solvation = -3541.417667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.37438 -39.15546 -37.07114 -35.01285 -34.83721 -33.98130 -33.37981 -31.28685 -29.53326 -28.29609 -25.74638 -24.48163 -23.73899 -23.11112 -21.14853 -20.14712 -19.88165 -18.00452 -17.41035 -16.79746 -16.58118 -16.30052 -15.73711 -15.06725 -14.71132 -14.63855 -14.43432 -14.00499 -13.57430 -13.39235 -13.33345 -12.87690 -12.84111 -12.77628 -11.99231 -11.96610 -11.41233 -11.39124 -11.13373 -10.83922 -10.80410 -10.69558 -10.54905 -10.09721 -9.89689 -9.72165 -9.33658 -9.00416 -8.92958 -8.52258 -6.98684 -5.75693 -3.06118 1.18833 2.12847 2.57704 3.42559 3.46077 3.47680 3.48667 3.60027 3.93379 4.56937 4.73023 4.89616 4.95107 4.95901 5.04567 5.20775 5.45048 5.54338 5.56061 5.59327 5.60158 5.62976 5.80403 5.90575 5.93377 6.05605 6.08232 6.14623 6.39845 6.53989 6.76933 6.91170 7.53441 7.66439 8.02175 8.23448 8.40661 8.55424 9.52902 10.08156 10.44588 11.45844 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.005397 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.841918 B = 5187.215368 C = 6995.567518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C 0.194 3.806 4 N -0.448 5.448 5 C -0.062 4.062 6 C 0.595 3.405 7 O -0.553 6.553 8 N -0.691 5.691 9 C 0.117 3.883 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 N -0.712 5.712 15 C -0.248 4.248 16 H 0.069 0.931 17 C -0.007 4.007 18 N -0.925 5.925 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.287 1.287 23 C 0.000 4.000 24 O -0.200 6.200 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.419 0.581 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.049 0.951 35 H 0.363 0.637 36 H 0.389 0.611 37 H 0.256 0.744 38 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 1.866 -11.453 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C -0.015 4.015 4 N -0.177 5.177 5 C -0.182 4.182 6 C 0.380 3.620 7 O -0.432 6.432 8 N -0.341 5.341 9 C -0.007 4.007 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.021 4.021 13 O -0.363 6.363 14 N -0.354 5.354 15 C -0.379 4.379 16 H 0.087 0.913 17 C -0.204 4.204 18 N -0.572 5.572 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.073 4.073 24 O -0.086 6.086 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.257 0.743 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.208 0.792 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.860 1.785 -11.450 14.587 hybrid contribution 0.203 -0.312 0.693 0.787 sum -8.657 1.472 -10.756 13.886 Atomic orbital electron populations 1.21785 0.93071 1.02994 1.02967 1.20115 0.96846 0.84018 1.05540 1.26374 0.99833 0.97034 0.78282 1.70872 1.14799 1.02413 1.29655 1.21914 1.08969 0.94290 0.93014 1.16745 0.78014 0.84966 0.82253 1.90778 1.49253 1.27489 1.75712 1.45833 1.64916 1.18622 1.04779 1.21628 1.01214 0.88053 0.89815 1.20590 0.95858 0.87651 0.90491 0.91622 1.23036 0.82669 0.96696 0.99744 1.86572 1.28630 1.59895 1.61231 1.42350 1.35314 1.19753 1.37947 1.19154 1.10825 1.00251 1.07651 0.91271 1.24737 0.97865 0.98504 0.99262 1.69675 1.20610 1.26588 1.40335 0.86298 0.77461 0.80562 0.81961 1.21241 1.21744 1.21382 1.25206 0.99757 0.86622 0.95733 1.84359 1.63642 1.22585 1.38060 0.91521 0.92305 0.90868 0.88859 0.87113 0.74327 0.91880 0.90341 0.95513 0.93271 0.79185 0.77652 0.93443 0.75477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.15 0.37 -0.83 16 2 C -0.03 -0.25 6.56 -27.89 -0.18 -0.44 16 3 C 0.19 2.61 7.56 -13.08 -0.10 2.52 16 4 N -0.45 -7.52 11.06 -7.65 -0.08 -7.60 16 5 C -0.06 -1.04 6.99 -83.02 -0.58 -1.62 16 6 C 0.60 11.28 7.81 -12.52 -0.10 11.19 16 7 O -0.55 -11.28 16.89 5.27 0.09 -11.19 16 8 N -0.69 -13.30 5.38 -61.38 -0.33 -13.63 16 9 C 0.12 2.20 5.12 -4.04 -0.02 2.18 16 10 C 0.17 3.27 2.84 -67.93 -0.19 3.08 16 11 H 0.07 1.25 8.08 -51.92 -0.42 0.83 16 12 C 0.06 1.06 6.86 37.16 0.25 1.32 16 13 O -0.56 -10.19 12.64 -35.23 -0.45 -10.63 16 14 N -0.71 -17.60 4.51 -53.42 -0.24 -17.85 16 15 C -0.25 -6.69 9.93 -15.06 -0.15 -6.84 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 18 N -0.92 -27.91 13.06 55.49 0.72 -27.19 16 19 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.00 0.01 11.95 29.96 0.36 0.36 16 24 O -0.20 -2.57 10.73 6.50 0.07 -2.50 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.42 8.53 7.87 -40.82 -0.32 8.21 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.63 7.39 -51.93 -0.38 1.24 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.36 4.76 9.12 45.56 0.42 5.17 16 36 H 0.39 10.72 7.80 -40.82 -0.32 10.40 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 38 H 0.23 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -34.08 335.74 -5.00 -39.08 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -4.38 Total: 18.75 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -0.44 Total: 10.63 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: 0.07 Total: -66.26 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.29 Total: -24.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.08 -5.00 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676524489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.380 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds