Wall clock time and date at job start Tue Mar 31 2020 02:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47660 * 2 1 4 4 N 1.29931 * 125.37851 * 90.34993 * 3 2 1 5 5 C 1.36070 * 108.47893 * 180.16985 * 4 3 2 6 6 C 1.47419 * 126.44892 * 179.82429 * 5 4 3 7 7 O 1.21612 * 119.99710 * 179.68481 * 6 5 4 8 8 N 1.34779 * 120.00078 * 359.68783 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.47142 * 294.99240 * 10 9 8 12 12 C 1.53002 * 109.46776 * 174.99842 * 10 9 8 13 13 O 1.42895 * 109.47504 * 304.99727 * 12 10 9 14 14 N 1.46496 * 109.47449 * 54.99576 * 10 9 8 15 15 C 1.36941 * 120.00198 * 204.99613 * 14 10 9 16 16 H 1.07996 * 119.99379 * 0.02562 * 15 14 10 17 17 C 1.38810 * 119.99828 * 180.02562 * 15 14 10 18 18 N 1.31617 * 120.00148 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99611 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47352 * 60.00616 * 19 17 15 21 21 H 1.48502 * 109.47208 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47642 * 300.00345 * 19 17 15 23 23 C 1.36096 * 107.09998 * 359.55995 * 5 4 3 24 24 O 1.34050 * 125.37637 * 270.03237 * 3 2 1 25 25 H 1.09003 * 109.46806 * 299.99893 * 1 2 3 26 26 H 1.09001 * 109.47492 * 59.99558 * 1 2 3 27 27 H 1.08999 * 109.47555 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46806 * 240.00107 * 2 1 3 29 29 H 1.09001 * 109.47492 * 120.00442 * 2 1 3 30 30 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 32 32 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 33 33 H 1.09001 * 109.46966 * 65.00241 * 12 10 9 34 34 H 1.09007 * 109.46935 * 184.99698 * 12 10 9 35 35 H 0.96700 * 114.00507 * 180.02562 * 13 12 10 36 36 H 0.97002 * 119.99429 * 25.00168 * 14 10 9 37 37 H 0.97004 * 120.00027 * 179.97438 * 18 17 15 38 38 H 1.07994 * 126.52022 * 180.28305 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2893 2.1278 1.0594 5 6 2.7175 3.3573 0.6639 6 6 3.1122 4.4722 1.5439 7 8 3.4843 5.5249 1.0619 8 7 3.0608 4.3248 2.8826 9 6 3.4526 5.4330 3.7571 10 6 3.3033 5.0063 5.2188 11 1 2.2513 4.8238 5.4385 12 6 3.8293 6.1169 6.1304 13 8 5.1730 6.4370 5.7647 14 7 4.0705 3.7800 5.4504 15 6 3.7173 2.9330 6.4668 16 1 2.8728 3.1689 7.0972 17 6 4.4446 1.7713 6.6865 18 7 5.4741 1.4842 5.9184 19 14 3.9622 0.6155 8.0724 20 1 2.5743 0.1340 7.8550 21 1 4.8898 -0.5439 8.0956 22 1 4.0385 1.3371 9.3680 23 6 2.7185 3.3621 -0.6971 24 8 2.2906 2.1526 -1.0930 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.7638 3.4852 3.2670 31 1 2.8125 6.2935 3.5621 32 1 4.4909 5.7007 3.5613 33 1 3.2027 7.0023 6.0230 34 1 3.8055 5.7784 7.1663 35 1 5.5715 7.1350 6.3024 36 1 4.8289 3.5682 4.8839 37 1 5.9826 0.6726 6.0722 38 1 3.0086 4.1825 -1.3367 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676524489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:14 Heat of formation + Delta-G solvation = -87.950739 kcal Electronic energy + Delta-G solvation = -22215.456257 eV Core-core repulsion = 18672.716211 eV Total energy + Delta-G solvation = -3542.740045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.47292 -40.64121 -38.61723 -36.41903 -36.07345 -35.19541 -34.83758 -33.11629 -30.67098 -30.03110 -27.14695 -25.69922 -25.31989 -24.45101 -22.21388 -21.68044 -21.25300 -19.54396 -19.01679 -18.16078 -17.89857 -17.48330 -17.29672 -16.57980 -16.15768 -15.89131 -15.57148 -15.37921 -15.20592 -14.87497 -14.58789 -14.47906 -14.25112 -13.70028 -13.58632 -13.05721 -12.76062 -12.65103 -12.62222 -12.35187 -12.29023 -12.04842 -11.93274 -11.85005 -11.74002 -11.36147 -10.95502 -10.71833 -10.23766 -9.94000 -9.00823 -7.89277 -5.19042 0.05145 0.94824 1.48961 1.51698 1.55556 1.57513 2.10093 2.23410 2.58083 2.86357 3.42485 3.60571 3.70534 3.76565 3.88231 4.00135 4.20514 4.25293 4.37253 4.42050 4.54134 4.56737 4.58448 4.67132 4.83105 4.97698 4.99191 5.04974 5.07027 5.19663 5.33692 5.39964 5.53588 6.28616 6.32189 6.60215 7.04835 7.08719 7.36443 8.08444 8.34019 9.33564 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.005397 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.841918 B = 5187.215368 C = 6995.567518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 C 0.201 3.799 4 N -0.490 5.490 5 C -0.104 4.104 6 C 0.594 3.406 7 O -0.573 6.573 8 N -0.696 5.696 9 C 0.127 3.873 10 C 0.160 3.840 11 H 0.077 0.923 12 C 0.067 3.933 13 O -0.584 6.584 14 N -0.723 5.723 15 C -0.239 4.239 16 H 0.081 0.919 17 C -0.072 4.072 18 N -0.967 5.967 19 Si 0.972 3.028 20 H -0.276 1.276 21 H -0.301 1.301 22 H -0.280 1.280 23 C 0.030 3.970 24 O -0.191 6.191 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.412 0.588 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.386 0.614 36 H 0.371 0.629 37 H 0.248 0.752 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 1.938 -12.043 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 C -0.009 4.009 4 N -0.219 5.219 5 C -0.223 4.223 6 C 0.381 3.619 7 O -0.455 6.455 8 N -0.345 5.345 9 C 0.003 3.997 10 C 0.050 3.950 11 H 0.094 0.906 12 C -0.014 4.014 13 O -0.390 6.390 14 N -0.363 5.363 15 C -0.371 4.371 16 H 0.099 0.901 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.801 3.199 20 H -0.202 1.202 21 H -0.227 1.227 22 H -0.206 1.206 23 C -0.045 4.045 24 O -0.077 6.077 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.249 0.751 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.234 0.766 36 H 0.203 0.797 37 H 0.057 0.943 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -10.400 1.921 -12.012 16.004 hybrid contribution 0.627 -0.262 0.796 1.047 sum -9.773 1.659 -11.216 14.969 Atomic orbital electron populations 1.21767 0.91856 1.04381 1.02281 1.20409 0.97733 0.81693 1.06791 1.27186 0.98090 0.97939 0.77658 1.70820 1.16626 1.03014 1.31480 1.21783 1.12123 0.94319 0.94082 1.17036 0.77311 0.85384 0.82219 1.90745 1.50346 1.28444 1.75944 1.45866 1.65112 1.18348 1.05207 1.21517 1.00336 0.88646 0.89156 1.20863 0.95795 0.86693 0.91607 0.90551 1.22840 0.83221 0.97340 0.97975 1.86522 1.29106 1.61209 1.62208 1.42456 1.35167 1.21370 1.37260 1.19581 1.10163 1.00045 1.07293 0.90103 1.25526 0.98412 1.00540 1.01991 1.69855 1.22336 1.26984 1.42579 0.85248 0.77124 0.78206 0.79333 1.20215 1.22736 1.20577 1.25773 0.96805 0.87064 0.94831 1.84409 1.63312 1.22323 1.37694 0.93497 0.91659 0.88444 0.85818 0.87578 0.75129 0.89694 0.92565 0.91341 0.94431 0.76603 0.79744 0.94324 0.72287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.03 -0.48 6.56 29.85 0.20 -0.29 16 3 C 0.20 5.21 7.56 88.39 0.67 5.88 16 4 N -0.49 -16.57 11.06 -293.04 -3.24 -19.81 16 5 C -0.10 -3.51 6.99 40.41 0.28 -3.23 16 6 C 0.59 22.79 7.81 86.66 0.68 23.47 16 7 O -0.57 -23.42 16.89 -4.07 -0.07 -23.49 16 8 N -0.70 -27.28 5.38 -466.37 -2.51 -29.79 16 9 C 0.13 4.77 5.12 86.38 0.44 5.21 16 10 C 0.16 6.21 2.84 44.99 0.13 6.34 16 11 H 0.08 2.81 8.08 -2.38 -0.02 2.79 16 12 C 0.07 2.25 6.86 71.98 0.49 2.75 16 13 O -0.58 -20.64 12.64 -148.98 -1.88 -22.52 16 14 N -0.72 -36.13 4.51 -322.94 -1.46 -37.58 16 15 C -0.24 -12.92 9.93 84.03 0.83 -12.09 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 17 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 18 N -0.97 -59.95 13.06 21.65 0.28 -59.66 16 19 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 C 0.03 0.75 11.95 67.32 0.80 1.55 16 24 O -0.19 -4.56 10.73 0.33 0.00 -4.56 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.41 17.33 7.87 -92.71 -0.73 16.60 16 31 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.06 2.36 7.39 -2.39 -0.02 2.35 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.39 9.50 9.12 -74.06 -0.68 8.82 16 36 H 0.37 21.08 7.80 -92.71 -0.72 20.36 16 37 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.26 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -74.88 335.74 -2.16 -77.04 By element: Atomic # 1 Polarization: 48.92 SS G_CDS: -1.02 Total: 47.90 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.70 Total: 24.62 kcal Atomic # 7 Polarization: -139.92 SS G_CDS: -6.92 Total: -146.85 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -1.95 Total: -50.57 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.88 -2.16 -77.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676524489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.912 kcal (2) G-P(sol) polarization free energy of solvation -74.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds