Wall clock time and date at job start Tue Mar 31 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.48150 * 2 1 4 4 O 1.21281 * 119.99833 * 264.97940 * 3 2 1 5 5 N 1.34770 * 120.00175 * 84.97922 * 3 2 1 6 6 C 1.47023 * 125.64594 * 359.69216 * 5 3 2 7 7 C 1.54334 * 107.26458 * 178.85172 * 6 5 3 8 8 C 1.55152 * 103.02118 * 338.14078 * 7 6 5 9 9 O 1.42904 * 111.00369 * 277.23244 * 8 7 6 10 10 C 1.50697 * 111.03960 * 153.39763 * 8 7 6 11 11 H 1.07999 * 119.99959 * 247.78801 * 10 8 7 12 12 C 1.37876 * 120.00109 * 67.78453 * 10 8 7 13 13 N 1.31515 * 119.99834 * 359.97438 * 12 10 8 14 14 Si 1.86809 * 120.00121 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47294 * 89.99581 * 14 12 10 16 16 H 1.48500 * 109.46914 * 210.00114 * 14 12 10 17 17 H 1.48505 * 109.46756 * 329.99605 * 14 12 10 18 18 C 1.47422 * 125.65129 * 180.02562 * 5 3 2 19 19 C 1.53097 * 109.47989 * 239.98012 * 2 1 3 20 20 C 1.53174 * 109.16185 * 182.40944 * 19 2 1 21 21 C 1.53176 * 109.04061 * 56.97999 * 20 19 2 22 22 C 1.53091 * 109.21206 * 302.98570 * 21 20 19 23 23 O 1.42902 * 109.48518 * 120.03520 * 2 1 3 24 24 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47201 * 300.02001 * 1 2 3 26 26 H 1.08997 * 109.47411 * 60.02540 * 1 2 3 27 27 H 1.08999 * 109.88545 * 298.39226 * 6 5 3 28 28 H 1.08998 * 109.88319 * 59.56324 * 6 5 3 29 29 H 1.09002 * 110.85027 * 219.67298 * 7 6 5 30 30 H 1.08997 * 110.52001 * 96.45226 * 7 6 5 31 31 H 0.96695 * 114.00214 * 292.19646 * 9 8 7 32 32 H 0.97005 * 119.99810 * 180.02562 * 13 12 10 33 33 H 1.09001 * 110.36733 * 322.93037 * 18 5 3 34 34 H 1.09002 * 110.36804 * 85.24929 * 18 5 3 35 35 H 1.08995 * 109.52587 * 62.49797 * 19 2 1 36 36 H 1.09004 * 109.57034 * 302.34297 * 19 2 1 37 37 H 1.08995 * 109.54500 * 297.10556 * 20 19 2 38 38 H 1.08999 * 109.54245 * 176.84623 * 20 19 2 39 39 H 1.09002 * 109.52410 * 62.92413 * 21 20 19 40 40 H 1.09004 * 109.52533 * 183.05059 * 21 20 19 41 41 H 1.09007 * 109.48127 * 177.62276 * 22 21 20 42 42 H 1.09000 * 109.48171 * 297.66002 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3215 1.9617 -1.0463 5 7 2.1610 2.0901 1.1626 6 6 1.8423 1.5598 2.4964 7 6 2.1726 2.6664 3.5202 8 6 3.1836 3.5604 2.7548 9 8 4.5055 3.0237 2.8357 10 6 3.1470 4.9778 3.2653 11 1 2.7725 5.7698 2.6338 12 6 3.5917 5.2635 4.5387 13 7 4.0473 4.2990 5.3080 14 14 3.5458 7.0204 5.1719 15 1 2.2429 7.2726 5.8382 16 1 4.6478 7.2244 6.1462 17 1 3.7103 7.9609 4.0345 18 6 2.6378 3.4776 1.3072 19 6 2.0405 -0.7221 -1.2497 20 6 3.5710 -0.7707 -1.2123 21 6 4.0176 -1.4601 0.0806 22 6 3.4320 -0.7099 1.2797 23 8 2.0066 -0.6743 1.1663 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5141 0.8898 26 1 -0.3634 0.5134 -0.8902 27 1 0.7838 1.3056 2.5510 28 1 2.4487 0.6770 2.6989 29 1 2.6314 2.2436 4.4140 30 1 1.2756 3.2304 3.7759 31 1 4.8887 3.0540 3.7230 32 1 4.3598 4.5000 6.2041 33 1 3.4326 3.6823 0.5898 34 1 1.8137 4.1780 1.1716 35 1 1.7148 -0.1841 -2.1399 36 1 1.6443 -1.7373 -1.2723 37 1 3.9689 0.2436 -1.2409 38 1 3.9391 -1.3324 -2.0709 39 1 3.6613 -2.4902 0.0860 40 1 5.1060 -1.4508 0.1413 41 1 3.7123 -1.2213 2.2007 42 1 3.8206 0.3084 1.2965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844017708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:46 Heat of formation + Delta-G solvation = -132.793946 kcal Electronic energy + Delta-G solvation = -24684.485301 eV Core-core repulsion = 21243.341051 eV Total energy + Delta-G solvation = -3441.144249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.73674 -38.15112 -37.06799 -34.45008 -33.38403 -32.78041 -32.15008 -29.76688 -28.37620 -27.66455 -25.45637 -24.25086 -23.35561 -21.66969 -20.97806 -19.57677 -18.37937 -17.32844 -17.04635 -16.02606 -15.38143 -15.10650 -14.98731 -14.83454 -14.40929 -14.14282 -13.92332 -13.46860 -13.02025 -12.68803 -12.57272 -12.42264 -12.32904 -12.07839 -11.83684 -11.73214 -11.58700 -11.33669 -11.19388 -10.98152 -10.83968 -10.69405 -10.54471 -10.49460 -10.37966 -10.00662 -9.71572 -9.42313 -8.91284 -8.67629 -8.21087 -7.93557 -6.31316 -4.38825 2.97325 3.18251 3.26001 3.29722 3.46608 3.85104 4.24952 4.64576 4.86127 4.87841 4.96701 4.98778 5.06431 5.31125 5.53238 5.60935 5.62640 5.64711 5.71561 5.81463 5.84998 5.92749 5.98735 6.00618 6.05420 6.09913 6.12988 6.20840 6.38425 6.41014 6.46011 6.67421 6.90649 6.97043 7.22432 7.31751 7.33340 7.72333 7.98012 8.15195 8.59437 8.64424 9.30054 9.45881 10.76378 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030514 B = 0.005128 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.377131 B = 5459.209994 C = 5627.747477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.105 3.895 3 C 0.505 3.495 4 O -0.552 6.552 5 N -0.596 5.596 6 C 0.100 3.900 7 C -0.142 4.142 8 C 0.250 3.750 9 O -0.585 6.585 10 C -0.535 4.535 11 H 0.065 0.935 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.117 3.883 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.153 4.153 22 C 0.047 3.953 23 O -0.363 6.363 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.385 0.615 32 H 0.269 0.731 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 -10.928 -5.868 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 C 0.292 3.708 4 O -0.432 6.432 5 N -0.328 5.328 6 C -0.023 4.023 7 C -0.181 4.181 8 C 0.210 3.790 9 O -0.395 6.395 10 C -0.573 4.573 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.005 4.005 19 C -0.163 4.163 20 C -0.164 4.164 21 C -0.191 4.191 22 C -0.029 4.029 23 O -0.282 6.282 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.237 0.763 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.153 -10.891 -6.792 13.490 hybrid contribution 0.235 1.112 1.004 1.517 sum -3.917 -9.779 -5.788 12.020 Atomic orbital electron populations 1.21726 0.90840 1.03406 1.03286 1.21694 0.96130 0.88448 0.87469 1.20756 0.78749 0.88364 0.82968 1.90644 1.51534 1.70027 1.30985 1.48649 1.62672 1.15198 1.06281 1.22388 0.99193 0.98510 0.82184 1.23247 1.01013 0.96055 0.97750 1.19554 0.80496 0.91179 0.87802 1.86078 1.31270 1.85088 1.37071 1.21482 1.43196 0.93235 0.99427 0.91725 1.24984 0.93815 0.97950 0.96219 1.69564 1.42573 1.32014 1.09590 0.86403 0.77793 0.84013 0.78699 1.20449 1.21001 1.19691 1.22414 0.97975 0.80824 0.99283 1.21947 0.96520 1.00483 0.97372 1.21635 0.95450 1.01957 0.97399 1.22170 1.01147 1.00036 0.95728 1.22789 0.80596 1.01272 0.98260 1.88006 1.21636 1.76694 1.41852 0.90790 0.91242 0.90645 0.92980 0.90781 0.89969 0.91676 0.76254 0.92081 0.91261 0.91210 0.89976 0.90722 0.90825 0.91561 0.91358 0.90936 0.88448 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.83 37.16 0.33 -1.39 16 2 C 0.11 1.60 0.81 -91.72 -0.07 1.53 16 3 C 0.50 9.64 4.88 -10.99 -0.05 9.58 16 4 O -0.55 -11.98 15.38 5.56 0.09 -11.89 16 5 N -0.60 -11.97 2.76 -170.51 -0.47 -12.44 16 6 C 0.10 1.87 5.42 -3.06 -0.02 1.85 16 7 C -0.14 -3.06 5.64 -24.89 -0.14 -3.20 16 8 C 0.25 6.01 0.89 -89.62 -0.08 5.93 16 9 O -0.58 -14.76 13.18 -35.23 -0.46 -15.22 16 10 C -0.54 -13.83 8.25 -34.44 -0.28 -14.12 16 11 H 0.06 1.67 7.77 -52.49 -0.41 1.26 16 12 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 13 N -0.90 -22.90 10.79 55.43 0.60 -22.30 16 14 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.12 2.63 6.08 -2.52 -0.02 2.61 16 19 C -0.13 -1.68 4.58 -26.59 -0.12 -1.80 16 20 C -0.13 -1.73 5.75 -26.55 -0.15 -1.89 16 21 C -0.15 -1.94 6.13 -26.59 -0.16 -2.10 16 22 C 0.05 0.70 4.93 37.20 0.18 0.88 16 23 O -0.36 -5.53 8.07 -35.23 -0.28 -5.82 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.91 7.27 -51.93 -0.38 0.53 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.89 7.27 -51.93 -0.38 0.51 16 28 H 0.07 1.35 4.80 -51.93 -0.25 1.10 16 29 H 0.08 1.85 7.85 -51.93 -0.41 1.44 16 30 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 31 H 0.39 9.85 6.93 45.56 0.32 10.16 16 32 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 33 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 34 H 0.07 1.53 8.02 -51.93 -0.42 1.11 16 35 H 0.08 1.13 7.78 -51.93 -0.40 0.72 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.23 6.72 -51.93 -0.35 0.88 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 42 H 0.07 1.24 6.05 -51.93 -0.31 0.92 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -27.79 320.35 -7.33 -35.12 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.92 Total: 13.07 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.68 Total: -0.36 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.13 Total: -34.74 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.66 Total: -32.93 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.79 -7.33 -35.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844017708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.678 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds