Wall clock time and date at job start Tue Mar 31 2020 02:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.48150 * 2 1 4 4 O 1.21281 * 119.99833 * 264.97940 * 3 2 1 5 5 N 1.34770 * 120.00175 * 84.97922 * 3 2 1 6 6 C 1.47023 * 125.64594 * 359.69216 * 5 3 2 7 7 C 1.54334 * 107.26458 * 178.85172 * 6 5 3 8 8 C 1.55152 * 103.02118 * 338.14078 * 7 6 5 9 9 O 1.42904 * 111.00369 * 277.23244 * 8 7 6 10 10 C 1.50697 * 111.03960 * 153.39763 * 8 7 6 11 11 H 1.07999 * 119.99959 * 247.78801 * 10 8 7 12 12 C 1.37876 * 120.00109 * 67.78453 * 10 8 7 13 13 N 1.31515 * 119.99834 * 359.97438 * 12 10 8 14 14 Si 1.86809 * 120.00121 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47294 * 89.99581 * 14 12 10 16 16 H 1.48500 * 109.46914 * 210.00114 * 14 12 10 17 17 H 1.48505 * 109.46756 * 329.99605 * 14 12 10 18 18 C 1.47422 * 125.65129 * 180.02562 * 5 3 2 19 19 C 1.53097 * 109.47989 * 239.98012 * 2 1 3 20 20 C 1.53174 * 109.16185 * 182.40944 * 19 2 1 21 21 C 1.53176 * 109.04061 * 56.97999 * 20 19 2 22 22 C 1.53091 * 109.21206 * 302.98570 * 21 20 19 23 23 O 1.42902 * 109.48518 * 120.03520 * 2 1 3 24 24 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47201 * 300.02001 * 1 2 3 26 26 H 1.08997 * 109.47411 * 60.02540 * 1 2 3 27 27 H 1.08999 * 109.88545 * 298.39226 * 6 5 3 28 28 H 1.08998 * 109.88319 * 59.56324 * 6 5 3 29 29 H 1.09002 * 110.85027 * 219.67298 * 7 6 5 30 30 H 1.08997 * 110.52001 * 96.45226 * 7 6 5 31 31 H 0.96695 * 114.00214 * 292.19646 * 9 8 7 32 32 H 0.97005 * 119.99810 * 180.02562 * 13 12 10 33 33 H 1.09001 * 110.36733 * 322.93037 * 18 5 3 34 34 H 1.09002 * 110.36804 * 85.24929 * 18 5 3 35 35 H 1.08995 * 109.52587 * 62.49797 * 19 2 1 36 36 H 1.09004 * 109.57034 * 302.34297 * 19 2 1 37 37 H 1.08995 * 109.54500 * 297.10556 * 20 19 2 38 38 H 1.08999 * 109.54245 * 176.84623 * 20 19 2 39 39 H 1.09002 * 109.52410 * 62.92413 * 21 20 19 40 40 H 1.09004 * 109.52533 * 183.05059 * 21 20 19 41 41 H 1.09007 * 109.48127 * 177.62276 * 22 21 20 42 42 H 1.09000 * 109.48171 * 297.66002 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3215 1.9617 -1.0463 5 7 2.1610 2.0901 1.1626 6 6 1.8423 1.5598 2.4964 7 6 2.1726 2.6664 3.5202 8 6 3.1836 3.5604 2.7548 9 8 4.5055 3.0237 2.8357 10 6 3.1470 4.9778 3.2653 11 1 2.7725 5.7698 2.6338 12 6 3.5917 5.2635 4.5387 13 7 4.0473 4.2990 5.3080 14 14 3.5458 7.0204 5.1719 15 1 2.2429 7.2726 5.8382 16 1 4.6478 7.2244 6.1462 17 1 3.7103 7.9609 4.0345 18 6 2.6378 3.4776 1.3072 19 6 2.0405 -0.7221 -1.2497 20 6 3.5710 -0.7707 -1.2123 21 6 4.0176 -1.4601 0.0806 22 6 3.4320 -0.7099 1.2797 23 8 2.0066 -0.6743 1.1663 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5141 0.8898 26 1 -0.3634 0.5134 -0.8902 27 1 0.7838 1.3056 2.5510 28 1 2.4487 0.6770 2.6989 29 1 2.6314 2.2436 4.4140 30 1 1.2756 3.2304 3.7759 31 1 4.8887 3.0540 3.7230 32 1 4.3598 4.5000 6.2041 33 1 3.4326 3.6823 0.5898 34 1 1.8137 4.1780 1.1716 35 1 1.7148 -0.1841 -2.1399 36 1 1.6443 -1.7373 -1.2723 37 1 3.9689 0.2436 -1.2409 38 1 3.9391 -1.3324 -2.0709 39 1 3.6613 -2.4902 0.0860 40 1 5.1060 -1.4508 0.1413 41 1 3.7123 -1.2213 2.2007 42 1 3.8206 0.3084 1.2965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844017708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:45 Heat of formation + Delta-G solvation = -151.491809 kcal Electronic energy + Delta-G solvation = -24685.296101 eV Core-core repulsion = 21243.341051 eV Total energy + Delta-G solvation = -3441.955050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.09771 -39.71474 -38.66654 -36.20597 -34.55838 -34.14736 -33.91901 -31.50811 -30.09740 -28.76748 -27.26793 -25.42553 -24.81476 -23.05307 -22.32486 -21.37789 -19.80978 -19.12896 -18.60702 -17.26272 -16.92592 -16.86106 -16.54373 -16.34150 -15.74485 -15.61421 -15.20424 -15.04240 -14.62646 -14.13005 -13.98811 -13.76273 -13.70876 -13.35351 -13.26917 -13.15811 -13.06995 -12.91653 -12.86415 -12.52841 -12.44452 -12.28151 -12.11073 -11.84075 -11.76996 -11.52475 -11.31541 -10.92522 -10.67251 -10.26115 -10.14981 -9.57541 -8.26367 -6.41037 1.41328 1.44388 1.48324 1.53480 1.97239 2.38934 2.66203 2.98309 3.36918 3.67716 3.79848 3.82381 3.90941 3.95717 4.06207 4.25943 4.30879 4.36529 4.47567 4.55361 4.58211 4.64893 4.72484 4.73788 4.83715 4.89913 4.91331 4.98245 5.06880 5.09203 5.15988 5.19662 5.25760 5.33534 5.43891 5.50121 5.75905 5.99909 6.04586 6.58470 6.63311 7.06881 7.30304 7.44018 8.80084 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030514 B = 0.005128 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.377131 B = 5459.209994 C = 5627.747477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.107 3.893 3 C 0.499 3.501 4 O -0.585 6.585 5 N -0.600 5.600 6 C 0.111 3.889 7 C -0.132 4.132 8 C 0.239 3.761 9 O -0.594 6.594 10 C -0.563 4.563 11 H 0.055 0.945 12 C 0.037 3.963 13 N -0.909 5.909 14 Si 0.962 3.038 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.277 1.277 18 C 0.122 3.878 19 C -0.123 4.123 20 C -0.129 4.129 21 C -0.146 4.146 22 C 0.044 3.956 23 O -0.361 6.361 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.381 0.619 32 H 0.273 0.727 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.032 0.968 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 -12.789 -5.733 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.065 3.935 3 C 0.288 3.712 4 O -0.466 6.466 5 N -0.332 5.332 6 C -0.011 4.011 7 C -0.170 4.170 8 C 0.199 3.801 9 O -0.404 6.404 10 C -0.601 4.601 11 H 0.073 0.927 12 C -0.164 4.164 13 N -0.549 5.549 14 Si 0.787 3.213 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.202 1.202 18 C -0.001 4.001 19 C -0.160 4.160 20 C -0.167 4.167 21 C -0.184 4.184 22 C -0.032 4.032 23 O -0.280 6.280 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.233 0.767 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.133 0.867 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.267 -12.773 -6.654 15.335 hybrid contribution 0.634 1.709 0.936 2.049 sum -4.633 -11.064 -5.717 13.288 Atomic orbital electron populations 1.21792 0.88552 1.05392 1.03342 1.21854 0.97725 0.85487 0.88483 1.21713 0.77641 0.89905 0.81899 1.90619 1.52766 1.71186 1.32040 1.48712 1.62929 1.14213 1.07303 1.22342 1.00740 0.97406 0.80628 1.23046 0.99886 0.96333 0.97777 1.19701 0.80424 0.91121 0.88890 1.86073 1.32282 1.85221 1.36788 1.21698 1.44313 0.94043 1.00025 0.92656 1.25614 0.93330 1.01305 0.96196 1.69624 1.42251 1.33256 1.09747 0.85500 0.78039 0.79821 0.77898 1.19691 1.20481 1.20154 1.22174 0.97222 0.82819 0.97871 1.21996 0.96219 1.01841 0.95988 1.21646 0.95834 1.00101 0.99077 1.22140 1.01548 1.00773 0.93902 1.22839 0.80489 0.99590 1.00327 1.88008 1.21773 1.76145 1.42038 0.87791 0.91726 0.90155 0.90507 0.90007 0.91064 0.92019 0.76745 0.91749 0.93840 0.91144 0.90562 0.87408 0.94892 0.89241 0.88708 0.90296 0.86668 0.95266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.83 71.98 0.64 -2.35 16 2 C 0.11 3.05 0.81 -11.51 -0.01 3.04 16 3 C 0.50 19.08 4.88 87.66 0.43 19.51 16 4 O -0.58 -25.99 15.38 -3.03 -0.05 -26.04 16 5 N -0.60 -24.33 2.76 -811.75 -2.24 -26.58 16 6 C 0.11 4.08 5.42 86.73 0.47 4.55 16 7 C -0.13 -5.72 5.64 31.78 0.18 -5.54 16 8 C 0.24 11.78 0.89 -10.14 -0.01 11.77 16 9 O -0.59 -30.96 13.18 -148.98 -1.96 -32.92 16 10 C -0.56 -29.74 8.25 25.60 0.21 -29.53 16 11 H 0.06 2.94 7.77 -2.91 -0.02 2.92 16 12 C 0.04 1.87 5.30 84.65 0.45 2.32 16 13 N -0.91 -46.54 10.79 21.45 0.23 -46.31 16 14 Si 0.96 41.12 29.54 68.60 2.03 43.15 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 18 C 0.12 5.70 6.08 86.86 0.53 6.23 16 19 C -0.12 -2.98 4.58 30.69 0.14 -2.84 16 20 C -0.13 -3.32 5.75 30.71 0.18 -3.14 16 21 C -0.15 -3.34 6.13 30.68 0.19 -3.16 16 22 C 0.04 1.23 4.93 72.01 0.36 1.58 16 23 O -0.36 -10.10 8.07 -148.98 -1.20 -11.30 16 24 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.51 7.27 -2.39 -0.02 1.49 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 2.47 7.27 -2.39 -0.02 2.46 16 28 H 0.08 2.91 4.80 -2.39 -0.01 2.90 16 29 H 0.07 3.23 7.85 -2.39 -0.02 3.21 16 30 H 0.06 2.68 8.03 -2.39 -0.02 2.66 16 31 H 0.38 20.07 6.93 -74.06 -0.51 19.55 16 32 H 0.27 13.25 8.31 -92.70 -0.77 12.48 16 33 H 0.04 2.21 8.04 -2.39 -0.02 2.19 16 34 H 0.07 3.22 8.02 -2.39 -0.02 3.20 16 35 H 0.08 1.96 7.78 -2.39 -0.02 1.94 16 36 H 0.11 1.95 8.14 -2.38 -0.02 1.94 16 37 H 0.03 1.11 6.72 -2.39 -0.02 1.09 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 42 H 0.03 1.06 6.05 -2.39 -0.01 1.04 16 Total: -1.00 -60.91 320.35 1.05 -59.86 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.51 Total: 37.72 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 3.74 Total: 2.43 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -2.01 Total: -72.89 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -3.21 Total: -70.26 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -60.91 1.05 -59.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844017708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.634 kcal (2) G-P(sol) polarization free energy of solvation -60.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds