Wall clock time and date at job start Tue Mar 31 2020 02:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.46908 * 2 1 4 4 H 1.09001 * 109.46891 * 304.99619 * 3 2 1 5 5 C 1.50706 * 109.47222 * 185.00262 * 3 2 1 6 6 H 1.08004 * 119.99850 * 240.00141 * 5 3 2 7 7 C 1.37877 * 120.00082 * 59.99474 * 5 3 2 8 8 N 1.31515 * 119.99982 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00059 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47619 * 60.00149 * 9 7 5 11 11 H 1.48499 * 109.47169 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46978 * 299.99951 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00357 * 3 2 1 14 14 C 1.34773 * 119.99804 * 274.99666 * 13 3 2 15 15 O 1.21285 * 119.99897 * 0.02562 * 14 13 3 16 16 C 1.50704 * 120.00231 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.49299 * 59.93839 * 16 14 13 18 18 C 1.53043 * 109.49772 * 180.02562 * 16 14 13 19 19 C 1.53044 * 109.53663 * 181.31914 * 18 16 14 20 20 C 1.53188 * 109.30917 * 298.63548 * 19 18 16 21 21 N 1.46925 * 108.78113 * 54.63748 * 20 19 18 22 22 C 1.34773 * 120.63346 * 126.40524 * 21 20 19 23 23 N 1.34771 * 120.00213 * 354.97335 * 22 21 20 24 24 O 1.21589 * 119.99819 * 174.96381 * 22 21 20 25 25 C 1.46933 * 118.73550 * 306.39319 * 21 20 19 26 26 H 1.08993 * 109.47639 * 60.00178 * 1 2 3 27 27 H 1.09005 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47263 * 299.99936 * 1 2 3 29 29 H 1.09001 * 109.47263 * 240.00064 * 2 1 3 30 30 H 1.09003 * 109.47671 * 119.99840 * 2 1 3 31 31 H 0.97002 * 119.99923 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00466 * 95.00199 * 13 3 2 33 33 H 1.09006 * 109.46086 * 301.33637 * 18 16 14 34 34 H 1.08994 * 109.46109 * 61.31417 * 18 16 14 35 35 H 1.09000 * 109.49852 * 58.58673 * 19 18 16 36 36 H 1.08996 * 109.49504 * 178.64774 * 19 18 16 37 37 H 1.09005 * 109.58311 * 174.42354 * 20 19 18 38 38 H 1.08993 * 109.59159 * 294.84605 * 20 19 18 39 39 H 0.96998 * 120.00459 * 5.05405 * 23 22 21 40 40 H 0.97004 * 119.99830 * 185.06489 * 23 22 21 41 41 H 1.09003 * 109.58279 * 293.81728 * 25 21 20 42 42 H 1.09003 * 109.58506 * 173.39327 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3812 10 1 6.5967 0.1455 -0.2345 11 1 6.3977 0.2169 -2.6504 12 1 6.5003 2.2802 -1.3810 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 1 0.7280 4.1523 2.8689 18 6 -1.3834 3.8939 2.5221 19 6 -1.7772 4.6064 3.8180 20 6 -1.7576 3.6020 4.9745 21 7 -0.4386 2.9562 5.0178 22 6 0.2851 2.9483 6.1547 23 7 -0.1523 3.6223 7.2367 24 8 1.3326 2.3329 6.2043 25 6 0.0763 2.3189 3.7981 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0604 -2.9503 32 1 2.2718 2.1232 1.9977 33 1 -1.4204 4.6009 1.6933 34 1 -2.0778 3.0755 2.3325 35 1 -1.0687 5.4094 4.0215 36 1 -2.7790 5.0230 3.7141 37 1 -1.9403 4.1232 5.9142 38 1 -2.5286 2.8479 4.8167 39 1 -1.0218 4.0520 7.2217 40 1 0.4026 3.6779 8.0304 41 1 -0.5452 1.4601 3.5443 42 1 1.1037 1.9934 3.9617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183806924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:55 Heat of formation + Delta-G solvation = -76.968667 kcal Electronic energy + Delta-G solvation = -23437.122104 eV Core-core repulsion = 20030.691371 eV Total energy + Delta-G solvation = -3406.430732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58344 -39.15136 -37.11429 -35.03514 -34.08804 -32.47212 -32.37184 -31.47132 -30.39406 -26.96503 -25.45131 -24.20615 -22.92624 -21.71161 -20.19862 -19.56591 -19.19595 -18.60047 -17.27321 -16.86187 -15.73111 -15.54092 -15.33249 -14.93746 -14.89319 -14.57311 -14.13719 -13.80060 -13.39207 -13.30583 -13.10328 -12.74799 -12.63532 -11.93757 -11.62073 -11.31532 -11.23485 -11.09617 -10.96852 -10.95559 -10.78126 -10.62085 -10.30513 -10.27707 -10.12750 -9.85846 -9.59795 -9.03322 -8.97930 -8.68126 -8.45308 -7.78079 -6.08373 -4.17416 2.59409 3.06923 3.29450 3.34195 3.35962 3.43297 3.87898 4.10379 4.40448 4.62726 4.71919 4.76095 5.02558 5.15962 5.22260 5.24241 5.42038 5.60165 5.63378 5.75013 5.76942 5.90560 6.18304 6.25443 6.35781 6.42259 6.48899 6.60603 6.69222 6.74231 7.07766 7.22457 7.40318 7.49205 7.66152 7.69035 7.77512 7.94330 8.22267 8.47600 8.71187 8.81648 9.16608 9.49852 10.96867 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.004461 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.645437 B = 6275.194732 C = 6988.165474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.706 5.706 14 C 0.508 3.492 15 O -0.546 6.546 16 C -0.125 4.125 17 H 0.094 0.906 18 C -0.097 4.097 19 C -0.135 4.135 20 C 0.110 3.890 21 N -0.626 5.626 22 C 0.708 3.292 23 N -0.870 5.870 24 O -0.589 6.589 25 C 0.140 3.860 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.394 0.606 40 H 0.412 0.588 41 H 0.072 0.928 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 7.848 15.856 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.425 6.425 16 C -0.148 4.148 17 H 0.112 0.888 18 C -0.135 4.135 19 C -0.174 4.174 20 C -0.013 4.013 21 N -0.364 5.364 22 C 0.408 3.592 23 N -0.441 5.441 24 O -0.466 6.466 25 C 0.016 3.984 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.225 0.775 40 H 0.244 0.756 41 H 0.090 0.910 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.068 7.238 14.835 19.873 hybrid contribution 1.065 0.300 0.594 1.256 sum -10.003 7.538 15.429 19.873 Atomic orbital electron populations 1.21831 0.98401 0.97962 1.01141 1.21932 0.92565 0.99842 1.02322 1.18779 0.94162 0.89188 0.81027 0.93336 1.21218 0.90795 1.38981 1.06239 0.92144 1.24870 0.98539 0.94803 0.95390 1.69886 1.35168 1.37673 1.09331 0.86527 0.84976 0.78297 0.77418 1.20130 1.21171 1.20231 1.46561 1.14678 1.55558 1.18551 1.20075 0.82847 0.79401 0.88545 1.90667 1.51541 1.59804 1.40510 1.21765 0.99415 0.99379 0.94216 0.88825 1.21289 0.94752 1.00739 0.96760 1.21966 1.02304 0.98030 0.95061 1.21690 0.84716 0.95904 0.99020 1.47257 1.19230 1.59858 1.10046 1.15864 0.83204 0.79706 0.80472 1.43163 1.24026 1.60020 1.16880 1.90991 1.24488 1.47828 1.83325 1.21435 1.01878 0.93848 0.81190 0.93204 0.95926 0.94325 0.88327 0.94976 0.92567 0.77852 0.90653 0.90930 0.91439 0.90381 0.90656 0.90985 0.77515 0.75578 0.90966 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.15 0.32 -2.70 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.71 -14.61 4.93 -54.93 -0.27 -14.88 16 14 C 0.51 9.66 5.73 -10.98 -0.06 9.60 16 15 O -0.55 -12.16 13.12 5.55 0.07 -12.08 16 16 C -0.13 -1.76 2.68 -91.65 -0.25 -2.01 16 17 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.10 -1.17 4.46 -26.69 -0.12 -1.29 16 19 C -0.14 -1.10 6.08 -26.61 -0.16 -1.27 16 20 C 0.11 0.84 6.43 -3.71 -0.02 0.82 16 21 N -0.63 -7.06 2.97 -178.50 -0.53 -7.59 16 22 C 0.71 8.92 8.57 -86.93 -0.75 8.18 16 23 N -0.87 -6.65 8.79 27.63 0.24 -6.41 16 24 O -0.59 -10.23 16.61 5.29 0.09 -10.15 16 25 C 0.14 1.90 5.56 -3.71 -0.02 1.88 16 26 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.39 7.34 8.09 -40.82 -0.33 7.01 16 33 H 0.07 0.98 8.07 -51.93 -0.42 0.57 16 34 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.35 5.57 -51.93 -0.29 0.06 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.39 1.81 6.29 -40.82 -0.26 1.55 16 40 H 0.41 2.68 8.93 -40.82 -0.36 2.31 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 1.54 6.64 -51.93 -0.34 1.19 16 LS Contribution 330.07 15.07 4.97 4.97 Total: -1.00 -33.09 330.07 -7.91 -40.99 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.33 Total: 9.73 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.76 Total: 3.75 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.07 Total: -53.14 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.16 Total: -22.23 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.09 -7.91 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183806924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.974 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds