Wall clock time and date at job start Tue Mar 31 2020 02:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.46908 * 2 1 4 4 H 1.09001 * 109.46891 * 304.99619 * 3 2 1 5 5 C 1.50706 * 109.47222 * 185.00262 * 3 2 1 6 6 H 1.08004 * 119.99850 * 240.00141 * 5 3 2 7 7 C 1.37877 * 120.00082 * 59.99474 * 5 3 2 8 8 N 1.31515 * 119.99982 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00059 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47619 * 60.00149 * 9 7 5 11 11 H 1.48499 * 109.47169 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46978 * 299.99951 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00357 * 3 2 1 14 14 C 1.34773 * 119.99804 * 274.99666 * 13 3 2 15 15 O 1.21285 * 119.99897 * 0.02562 * 14 13 3 16 16 C 1.50704 * 120.00231 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.49299 * 59.93839 * 16 14 13 18 18 C 1.53043 * 109.49772 * 180.02562 * 16 14 13 19 19 C 1.53044 * 109.53663 * 181.31914 * 18 16 14 20 20 C 1.53188 * 109.30917 * 298.63548 * 19 18 16 21 21 N 1.46925 * 108.78113 * 54.63748 * 20 19 18 22 22 C 1.34773 * 120.63346 * 126.40524 * 21 20 19 23 23 N 1.34771 * 120.00213 * 354.97335 * 22 21 20 24 24 O 1.21589 * 119.99819 * 174.96381 * 22 21 20 25 25 C 1.46933 * 118.73550 * 306.39319 * 21 20 19 26 26 H 1.08993 * 109.47639 * 60.00178 * 1 2 3 27 27 H 1.09005 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47263 * 299.99936 * 1 2 3 29 29 H 1.09001 * 109.47263 * 240.00064 * 2 1 3 30 30 H 1.09003 * 109.47671 * 119.99840 * 2 1 3 31 31 H 0.97002 * 119.99923 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00466 * 95.00199 * 13 3 2 33 33 H 1.09006 * 109.46086 * 301.33637 * 18 16 14 34 34 H 1.08994 * 109.46109 * 61.31417 * 18 16 14 35 35 H 1.09000 * 109.49852 * 58.58673 * 19 18 16 36 36 H 1.08996 * 109.49504 * 178.64774 * 19 18 16 37 37 H 1.09005 * 109.58311 * 174.42354 * 20 19 18 38 38 H 1.08993 * 109.59159 * 294.84605 * 20 19 18 39 39 H 0.96998 * 120.00459 * 5.05405 * 23 22 21 40 40 H 0.97004 * 119.99830 * 185.06489 * 23 22 21 41 41 H 1.09003 * 109.58279 * 293.81728 * 25 21 20 42 42 H 1.09003 * 109.58506 * 173.39327 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3812 10 1 6.5967 0.1455 -0.2345 11 1 6.3977 0.2169 -2.6504 12 1 6.5003 2.2802 -1.3810 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 1 0.7280 4.1523 2.8689 18 6 -1.3834 3.8939 2.5221 19 6 -1.7772 4.6064 3.8180 20 6 -1.7576 3.6020 4.9745 21 7 -0.4386 2.9562 5.0178 22 6 0.2851 2.9483 6.1547 23 7 -0.1523 3.6223 7.2367 24 8 1.3326 2.3329 6.2043 25 6 0.0763 2.3189 3.7981 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0604 -2.9503 32 1 2.2718 2.1232 1.9977 33 1 -1.4204 4.6009 1.6933 34 1 -2.0778 3.0755 2.3325 35 1 -1.0687 5.4094 4.0215 36 1 -2.7790 5.0230 3.7141 37 1 -1.9403 4.1232 5.9142 38 1 -2.5286 2.8479 4.8167 39 1 -1.0218 4.0520 7.2217 40 1 0.4026 3.6779 8.0304 41 1 -0.5452 1.4601 3.5443 42 1 1.1037 1.9934 3.9617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183806924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:55 Heat of formation + Delta-G solvation = -102.303384 kcal Electronic energy + Delta-G solvation = -23438.220699 eV Core-core repulsion = 20030.691371 eV Total energy + Delta-G solvation = -3407.529328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63429 -40.58888 -38.23268 -36.86756 -35.05172 -34.30987 -33.32079 -33.00319 -31.77363 -28.90446 -26.38730 -25.54947 -24.64423 -22.78835 -21.71330 -21.04822 -20.47868 -19.47251 -18.80761 -17.90975 -17.40020 -17.18985 -16.55750 -16.27929 -16.12794 -15.74483 -15.33322 -15.12962 -14.79672 -14.63444 -14.27036 -14.10283 -13.93793 -13.45781 -13.38456 -13.15981 -12.91776 -12.66420 -12.47370 -12.17531 -12.07746 -11.95681 -11.90599 -11.63781 -11.57608 -11.30473 -11.05263 -10.69143 -10.62591 -10.47391 -9.64304 -9.59343 -8.16155 -6.33146 1.43736 1.45329 1.53088 1.62499 1.93958 2.14393 2.36593 2.66920 3.12889 3.24061 3.70671 3.81747 3.87109 4.05816 4.15908 4.31974 4.50104 4.53700 4.58229 4.59269 4.74697 4.76223 4.80314 4.93126 5.05868 5.08513 5.21655 5.26897 5.42621 5.43631 5.45050 5.56807 5.63307 5.80534 5.85414 5.92788 6.03734 6.18018 6.74481 6.93380 6.99250 7.33547 7.57548 7.62641 8.88778 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.004461 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.645437 B = 6275.194732 C = 6988.165474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.707 5.707 14 C 0.505 3.495 15 O -0.580 6.580 16 C -0.109 4.109 17 H 0.102 0.898 18 C -0.096 4.096 19 C -0.125 4.125 20 C 0.105 3.895 21 N -0.623 5.623 22 C 0.701 3.299 23 N -0.845 5.845 24 O -0.644 6.644 25 C 0.147 3.853 26 H 0.027 0.973 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.399 0.601 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.413 0.587 40 H 0.420 0.580 41 H 0.068 0.932 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 9.026 18.259 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.355 5.355 14 C 0.291 3.709 15 O -0.460 6.460 16 C -0.131 4.131 17 H 0.120 0.880 18 C -0.134 4.134 19 C -0.163 4.163 20 C -0.017 4.017 21 N -0.360 5.360 22 C 0.401 3.599 23 N -0.417 5.417 24 O -0.526 6.526 25 C 0.022 3.978 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.246 0.754 40 H 0.254 0.746 41 H 0.086 0.914 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.934 8.468 17.298 22.658 hybrid contribution 1.242 -0.030 -0.158 1.252 sum -10.693 8.438 17.140 21.893 Atomic orbital electron populations 1.21662 0.96695 0.99146 1.00375 1.21777 0.94015 0.99121 1.01106 1.18358 0.93449 0.89247 0.81453 0.98103 1.21558 0.91695 1.39065 1.06622 0.91582 1.25717 1.03140 0.94336 0.95005 1.70032 1.37017 1.38273 1.09785 0.85474 0.79357 0.78429 0.77531 1.19268 1.20898 1.19709 1.46384 1.15807 1.55902 1.17416 1.20935 0.81609 0.78429 0.89928 1.90649 1.52265 1.60828 1.42277 1.21671 1.01077 0.99092 0.91299 0.87969 1.21309 0.92846 1.00434 0.98861 1.21929 1.03981 0.97703 0.92650 1.22019 0.82793 0.96169 1.00725 1.47215 1.20355 1.59689 1.08787 1.16106 0.82631 0.79714 0.81463 1.42905 1.24748 1.58416 1.15612 1.90958 1.27010 1.50237 1.84346 1.21148 1.00894 0.93654 0.82108 0.95373 0.93661 0.93576 0.91030 0.94460 0.92569 0.76712 0.92001 0.91775 0.90959 0.87470 0.86841 0.89981 0.75362 0.74644 0.91396 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.88 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.94 16 3 C 0.28 14.57 2.24 44.25 0.10 14.67 16 4 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 5 C -0.55 -30.09 8.73 25.60 0.22 -29.87 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.01 5.29 84.65 0.45 1.45 16 8 N -0.91 -52.93 11.29 21.45 0.24 -52.68 16 9 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 N -0.71 -30.07 4.93 -446.09 -2.20 -32.27 16 14 C 0.50 19.61 5.73 87.66 0.50 20.11 16 15 O -0.58 -26.59 13.12 -3.05 -0.04 -26.63 16 16 C -0.11 -3.01 2.68 -11.46 -0.03 -3.04 16 17 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 18 C -0.10 -2.17 4.46 30.62 0.14 -2.03 16 19 C -0.12 -1.57 6.08 30.67 0.19 -1.39 16 20 C 0.10 1.18 6.43 86.36 0.56 1.73 16 21 N -0.62 -12.64 2.97 -836.92 -2.49 -15.13 16 22 C 0.70 16.28 8.57 179.06 1.53 17.81 16 23 N -0.85 -10.15 8.79 -184.75 -1.62 -11.77 16 24 O -0.64 -22.08 16.61 -4.00 -0.07 -22.15 16 25 C 0.15 3.89 5.56 86.36 0.48 4.37 16 26 H 0.03 1.36 7.85 -2.39 -0.02 1.34 16 27 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.05 1.98 5.64 -2.39 -0.01 1.97 16 29 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.40 15.38 8.09 -92.71 -0.75 14.63 16 33 H 0.06 1.56 8.07 -2.38 -0.02 1.54 16 34 H 0.06 1.55 8.13 -2.39 -0.02 1.54 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.11 0.43 5.57 -2.38 -0.01 0.42 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.41 1.89 6.29 -92.71 -0.58 1.31 16 40 H 0.42 4.24 8.93 -92.71 -0.83 3.41 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 2.47 6.64 -2.39 -0.02 2.45 16 Total: -1.00 -75.33 330.07 -0.33 -75.67 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -1.10 Total: 26.67 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 4.91 Total: 13.00 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -6.07 Total: -111.85 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -0.11 Total: -48.77 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -75.33 -0.33 -75.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183806924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.638 kcal (2) G-P(sol) polarization free energy of solvation -75.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds