Wall clock time and date at job start Tue Mar 31 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47074 * 2 1 4 4 N 1.46500 * 109.47142 * 180.02562 * 3 2 1 5 5 C 1.47247 * 120.07749 * 269.97628 * 4 3 2 6 6 C 1.53112 * 108.40010 * 110.03783 * 5 4 3 7 7 C 1.51689 * 110.75648 * 85.59151 * 6 5 4 8 8 N 1.45756 * 113.93850 * 293.22816 * 7 6 5 9 9 C 1.46901 * 111.00064 * 302.69212 * 8 7 6 10 10 C 1.50695 * 109.47280 * 191.86481 * 9 8 7 11 11 O 1.21294 * 119.99648 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00026 * 179.97438 * 10 9 8 13 13 C 1.37099 * 119.99700 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00303 * 0.02562 * 13 12 10 15 15 C 1.38954 * 119.99969 * 180.02562 * 13 12 10 16 16 N 1.31419 * 119.99619 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00158 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46942 * 59.99893 * 17 15 13 19 19 H 1.48502 * 109.46954 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47353 * 299.99661 * 17 15 13 21 21 C 1.46874 * 112.43372 * 67.71220 * 8 7 6 22 22 C 1.33611 * 120.07474 * 90.00307 * 4 3 2 23 23 O 1.21272 * 119.88674 * 359.71865 * 22 4 3 24 24 H 1.08996 * 109.46713 * 300.00057 * 1 2 3 25 25 H 1.09001 * 109.47038 * 59.99987 * 1 2 3 26 26 H 1.08996 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47134 * 240.00711 * 2 1 3 28 28 H 1.08996 * 109.47681 * 120.00293 * 2 1 3 29 29 H 1.08999 * 109.47146 * 59.99912 * 3 2 1 30 30 H 1.09001 * 109.47199 * 299.99915 * 3 2 1 31 31 H 1.09002 * 109.68162 * 350.31383 * 5 4 3 32 32 H 1.08998 * 109.71470 * 229.78095 * 5 4 3 33 33 H 1.09003 * 109.22037 * 325.26575 * 6 5 4 34 34 H 1.08992 * 109.22272 * 205.92531 * 6 5 4 35 35 H 1.09000 * 108.58881 * 172.07450 * 7 6 5 36 36 H 1.09000 * 108.47294 * 54.30169 * 7 6 5 37 37 H 1.08998 * 109.47054 * 311.87109 * 9 8 7 38 38 H 1.09005 * 109.46900 * 71.86863 * 9 8 7 39 39 H 0.97001 * 120.00344 * 0.02562 * 12 10 9 40 40 H 0.96999 * 119.99260 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.60202 * 154.46763 * 21 8 7 42 42 H 1.08995 * 109.73859 * 34.06083 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2435 1.4429 1.2733 6 6 4.9166 0.0781 1.4421 7 6 6.2607 0.0509 0.7395 8 7 6.1710 0.1432 -0.7124 9 6 5.3407 -0.9388 -1.2584 10 6 5.5038 -0.9904 -2.7556 11 8 6.2397 -0.2036 -3.3130 12 7 4.8327 -1.9115 -3.4752 13 6 4.9815 -1.9587 -4.8372 14 1 5.6367 -1.2582 -5.3335 15 6 4.2893 -2.9080 -5.5792 16 7 3.4924 -3.7607 -4.9752 17 14 4.4925 -2.9729 -7.4350 18 1 5.9173 -3.2262 -7.7683 19 1 3.6535 -4.0668 -7.9868 20 1 4.0687 -1.6777 -8.0250 21 6 5.6881 1.4554 -1.1619 22 6 4.1741 1.4428 -1.1571 23 8 3.5666 1.4379 -2.2067 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.5524 1.6158 2.0982 32 1 5.0011 2.2264 1.2589 33 1 4.2743 -0.6937 1.0178 34 1 5.0625 -0.1212 2.5036 35 1 6.7692 -0.8779 0.9979 36 1 6.8582 0.8863 1.1046 37 1 5.6524 -1.8895 -0.8259 38 1 4.2950 -0.7534 -1.0130 39 1 4.2445 -2.5409 -3.0294 40 1 3.0095 -4.4236 -5.4932 41 1 6.0488 1.6516 -2.1716 42 1 6.0494 2.2315 -0.4873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189412114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:37 Heat of formation + Delta-G solvation = -58.834853 kcal Electronic energy + Delta-G solvation = -24129.233765 eV Core-core repulsion = 20723.589374 eV Total energy + Delta-G solvation = -3405.644391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77003 -38.06720 -36.87778 -35.91259 -33.81216 -33.24269 -31.38576 -31.10760 -28.64060 -27.45312 -25.45971 -24.81796 -23.93415 -21.60754 -20.85288 -19.21333 -18.74541 -17.78350 -16.92664 -16.65511 -15.97688 -15.82480 -14.85941 -14.71879 -14.44936 -14.20551 -13.89354 -13.71073 -13.51970 -13.34211 -13.05213 -12.94305 -12.28470 -12.15907 -12.08912 -11.96366 -11.53528 -11.42651 -11.35359 -11.25707 -11.12691 -10.89214 -10.84434 -10.63896 -10.34444 -10.08646 -9.64329 -9.34531 -8.64522 -8.40228 -7.87196 -7.78926 -6.28572 -3.67782 2.85063 3.03895 3.29650 3.33449 3.38945 4.05147 4.06293 4.34229 4.54306 4.63372 4.74951 4.97819 5.00794 5.03183 5.14212 5.24398 5.32674 5.35476 5.41670 5.42059 5.47721 5.54298 5.67094 5.76977 5.78415 5.84416 5.91277 6.01547 6.08978 6.16681 6.25385 6.31600 6.40385 6.60630 7.07291 7.27998 7.53688 7.67960 8.19306 8.45402 8.75685 9.31853 9.68374 10.20790 10.89723 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.005654 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.807459 B = 4951.404728 C = 5768.580743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.115 3.885 4 N -0.621 5.621 5 C 0.112 3.888 6 C -0.182 4.182 7 C 0.050 3.950 8 N -0.497 5.497 9 C 0.037 3.963 10 C 0.453 3.547 11 O -0.575 6.575 12 N -0.563 5.563 13 C -0.291 4.291 14 H 0.102 0.898 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 0.930 3.070 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.046 3.954 22 C 0.482 3.518 23 O -0.517 6.517 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.389 0.611 40 H 0.270 0.730 41 H 0.130 0.870 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 7.592 17.842 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C -0.007 4.007 4 N -0.356 5.356 5 C -0.011 4.011 6 C -0.222 4.222 7 C -0.079 4.079 8 N -0.220 5.220 9 C -0.094 4.094 10 C 0.238 3.762 11 O -0.459 6.459 12 N -0.199 5.199 13 C -0.420 4.420 14 H 0.120 0.880 15 C -0.181 4.181 16 N -0.548 5.548 17 Si 0.757 3.243 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.085 4.085 22 C 0.267 3.733 23 O -0.390 6.390 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.222 0.778 40 H 0.080 0.920 41 H 0.147 0.853 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.577 7.927 16.589 18.454 hybrid contribution -1.242 -0.538 -0.103 1.358 sum -2.820 7.389 16.487 18.286 Atomic orbital electron populations 1.21669 0.95216 1.02011 1.01582 1.21909 0.96196 0.97222 1.02645 1.21507 0.79476 0.97095 1.02652 1.48192 1.06465 1.74595 1.06366 1.21809 0.96189 0.97339 0.85743 1.22531 0.99445 0.98161 1.02110 1.21911 0.95600 1.03492 0.86907 1.61407 1.51307 1.01600 1.07667 1.22054 0.95680 0.95115 0.96521 1.19504 0.84842 0.84443 0.87371 1.90463 1.41273 1.42411 1.71752 1.41746 1.40585 1.30129 1.07480 1.19629 1.25178 1.15493 0.81735 0.88049 1.25225 0.96368 0.95985 1.00495 1.69614 1.29011 1.19499 1.36645 0.85935 0.78223 0.77752 0.82399 1.19967 1.21084 1.19966 1.22855 0.88018 0.91756 1.05865 1.21830 0.92173 0.76004 0.83247 1.90788 1.70250 1.47017 1.30943 0.93016 0.92440 0.92395 0.91106 0.92182 0.91105 0.89992 0.89854 0.90748 0.90750 0.90063 0.90294 0.90585 0.89302 0.92833 0.77789 0.92045 0.85256 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.14 -1.77 6.26 -26.73 -0.17 -1.94 16 3 C 0.12 1.42 5.41 -4.04 -0.02 1.40 16 4 N -0.62 -8.19 2.35 -173.05 -0.41 -8.59 16 5 C 0.11 1.02 5.95 -3.58 -0.02 1.00 16 6 C -0.18 -1.69 5.47 -27.34 -0.15 -1.84 16 7 C 0.05 0.55 5.18 -5.11 -0.03 0.53 16 8 N -0.50 -8.14 4.57 -238.91 -1.09 -9.23 16 9 C 0.04 0.71 4.28 -4.98 -0.02 0.69 16 10 C 0.45 11.45 7.16 -10.99 -0.08 11.37 16 11 O -0.58 -16.28 14.05 5.55 0.08 -16.20 16 12 N -0.56 -15.32 5.29 -10.96 -0.06 -15.38 16 13 C -0.29 -8.60 9.68 -14.93 -0.14 -8.75 16 14 H 0.10 3.14 7.16 -52.49 -0.38 2.76 16 15 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 16 N -0.91 -25.87 13.05 55.50 0.72 -25.14 16 17 Si 0.93 22.22 29.55 -169.99 -5.02 17.20 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.05 0.76 5.13 -4.64 -0.02 0.74 16 22 C 0.48 8.50 4.51 -11.16 -0.05 8.45 16 23 O -0.52 -11.86 16.38 5.56 0.09 -11.77 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 30 H 0.08 1.19 7.41 -51.93 -0.38 0.81 16 31 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 32 H 0.07 0.60 6.76 -51.93 -0.35 0.25 16 33 H 0.07 0.84 6.57 -51.93 -0.34 0.50 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.70 7.78 -51.93 -0.40 0.30 16 37 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 38 H 0.05 1.01 5.25 -51.93 -0.27 0.74 16 39 H 0.39 10.23 7.90 -40.82 -0.32 9.91 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 2.69 6.49 -51.93 -0.34 2.35 16 42 H 0.08 1.06 6.68 -51.93 -0.35 0.71 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -35.27 331.98 -7.58 -42.85 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.46 Total: 10.35 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -0.43 Total: 10.91 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.83 Total: -58.34 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: 0.17 Total: -27.97 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.27 -7.58 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189412114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.985 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds