Wall clock time and date at job start Tue Mar 31 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.69954 * 2 1 4 4 C 1.53349 * 109.67240 * 239.48308 * 2 1 3 5 5 C 1.52918 * 108.67204 * 172.73296 * 4 2 1 6 6 N 1.45753 * 110.48779 * 50.75767 * 5 4 2 7 7 C 1.33179 * 124.05966 * 340.94804 * 6 5 4 8 8 O 1.21277 * 118.12305 * 182.18757 * 7 6 5 9 9 C 1.50177 * 123.63231 * 2.17181 * 7 6 5 10 10 H 1.08999 * 109.40547 * 222.38231 * 9 7 6 11 11 N 1.46506 * 109.39994 * 102.55855 * 9 7 6 12 12 C 1.34773 * 119.99969 * 84.54775 * 11 9 7 13 13 O 1.21586 * 120.00012 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99940 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00211 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47428 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47367 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47363 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99916 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00133 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00452 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47406 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47085 * 120.00358 * 22 20 18 25 25 H 1.48508 * 109.46920 * 239.99938 * 22 20 18 26 26 H 1.09004 * 109.47107 * 299.48057 * 1 2 3 27 27 H 1.09002 * 109.47422 * 59.48183 * 1 2 3 28 28 H 1.09006 * 109.47059 * 179.48250 * 1 2 3 29 29 H 1.08998 * 109.60413 * 292.49547 * 4 2 1 30 30 H 1.08998 * 109.60326 * 52.81512 * 4 2 1 31 31 H 1.08999 * 109.29886 * 171.06677 * 5 4 2 32 32 H 1.09002 * 109.30243 * 290.43890 * 5 4 2 33 33 H 0.97005 * 117.94763 * 160.92331 * 6 5 4 34 34 H 0.97005 * 119.99811 * 264.82827 * 11 9 7 35 35 H 0.97004 * 120.00041 * 359.97438 * 14 12 11 36 36 H 1.08998 * 109.47182 * 299.99924 * 15 14 12 37 37 H 1.09001 * 109.47115 * 59.99869 * 15 14 12 38 38 H 1.08998 * 109.47065 * 300.00226 * 16 15 14 39 39 H 1.09001 * 109.46892 * 59.99962 * 16 15 14 40 40 H 1.09007 * 109.47198 * 299.99944 * 17 16 15 41 41 H 1.08998 * 109.47543 * 59.99686 * 17 16 15 42 42 H 0.96993 * 120.00440 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0462 -0.7332 -1.2440 5 6 3.5642 -0.5638 -1.3174 6 7 4.1794 -0.9198 -0.0449 7 6 3.5208 -0.9795 1.1111 8 8 4.1485 -1.2485 2.1134 9 6 2.0454 -0.7319 1.2416 10 1 1.8572 -0.1223 2.1254 11 7 1.3471 -2.0128 1.3764 12 6 1.2350 -2.5951 2.5866 13 8 1.7131 -2.0572 3.5667 14 7 0.5931 -3.7736 2.7105 15 6 0.4708 -4.4064 4.0261 16 6 -0.2962 -5.7232 3.8895 17 6 -0.4233 -6.3844 5.2633 18 6 -1.1782 -7.6817 5.1286 19 1 -1.5323 -8.0023 4.1601 20 6 -1.4168 -8.4592 6.2419 21 7 -0.9853 -8.0691 7.4214 22 14 -2.3532 -10.0670 6.0750 23 1 -2.7272 -10.2767 4.6533 24 1 -1.4951 -11.1894 6.5324 25 1 -3.5822 -10.0127 6.9068 26 1 -0.3633 0.5058 0.8946 27 1 -0.3634 0.5219 -0.8853 28 1 -0.3633 -1.0277 -0.0093 29 1 1.7994 -1.7925 -1.1728 30 1 1.5850 -0.3095 -2.1360 31 1 3.9610 -1.2079 -2.1021 32 1 3.7999 0.4738 -1.5538 33 1 5.1272 -1.1263 -0.0402 34 1 0.9689 -2.4437 0.5939 35 1 0.2114 -4.2026 1.9287 36 1 1.4645 -4.6044 4.4279 37 1 -0.0679 -3.7410 4.7007 38 1 -1.2899 -5.5249 3.4879 39 1 0.2422 -6.3889 3.2148 40 1 0.5706 -6.5828 5.6645 41 1 -0.9613 -5.7189 5.9385 42 1 -1.1535 -8.6159 8.2046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193847438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:39 Heat of formation + Delta-G solvation = -114.446147 kcal Electronic energy + Delta-G solvation = -22328.467089 eV Core-core repulsion = 18920.411211 eV Total energy + Delta-G solvation = -3408.055878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.01708 -40.49008 -38.11992 -37.04199 -35.93658 -35.19869 -33.79436 -32.73922 -30.18589 -28.91879 -27.96542 -25.08425 -24.40690 -22.46577 -22.34724 -22.20159 -20.04793 -19.53913 -18.52457 -18.15724 -17.65996 -17.30079 -16.63441 -16.50822 -16.21937 -15.85150 -15.52003 -15.47056 -14.99860 -14.60291 -14.25430 -14.14412 -13.87181 -13.72867 -13.53151 -13.33032 -12.78532 -12.75068 -12.54626 -12.33671 -12.20230 -11.81550 -11.68708 -11.67857 -11.61882 -11.33278 -11.28429 -11.13634 -10.56149 -10.32434 -10.05223 -9.83553 -8.19059 -6.30983 1.17994 1.41989 1.42555 1.55858 1.94456 2.04006 2.38831 2.42585 3.14689 3.29556 3.46186 3.60989 3.74540 3.88041 4.15923 4.22241 4.41825 4.44693 4.54248 4.55189 4.57841 4.86829 4.94920 4.97276 4.98833 5.03301 5.13647 5.16516 5.26192 5.34869 5.44351 5.45723 5.53818 5.70711 5.81435 5.84450 5.92253 6.22363 6.30131 6.86706 7.04807 7.20099 7.38751 7.56145 8.93558 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032552 B = 0.002743 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.953762 B =10205.817308 C =10453.177674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.107 0.893 4 C -0.132 4.132 5 C 0.100 3.900 6 N -0.708 5.708 7 C 0.494 3.506 8 O -0.596 6.596 9 C 0.161 3.839 10 H 0.087 0.913 11 N -0.711 5.711 12 C 0.694 3.306 13 O -0.625 6.625 14 N -0.727 5.727 15 C 0.150 3.850 16 C -0.098 4.098 17 C 0.023 3.977 18 C -0.539 4.539 19 H 0.069 0.931 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.256 1.256 24 H -0.281 1.281 25 H -0.280 1.280 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.416 0.584 35 H 0.413 0.587 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.067 0.933 40 H -0.011 1.011 41 H -0.008 1.008 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 17.905 -27.940 33.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.125 0.875 4 C -0.169 4.169 5 C -0.022 4.022 6 N -0.359 5.359 7 C 0.279 3.721 8 O -0.476 6.476 9 C 0.051 3.949 10 H 0.105 0.895 11 N -0.372 5.372 12 C 0.393 3.607 13 O -0.505 6.505 14 N -0.383 5.383 15 C 0.025 3.975 16 C -0.136 4.136 17 C -0.015 4.015 18 C -0.577 4.577 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.794 3.206 23 H -0.180 1.180 24 H -0.207 1.207 25 H -0.205 1.205 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.236 0.764 34 H 0.255 0.745 35 H 0.249 0.751 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.007 0.993 41 H 0.011 0.989 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.374 18.262 -26.388 32.387 hybrid contribution 0.013 -1.296 0.368 1.348 sum 4.387 16.966 -26.020 31.370 Atomic orbital electron populations 1.21781 0.92603 1.02799 1.02876 1.21650 0.97951 1.00204 0.91390 0.87527 1.22066 0.94228 1.01672 0.98945 1.21780 0.94000 1.02837 0.83579 1.45580 1.13552 1.68773 1.08006 1.21054 0.91564 0.76471 0.83052 1.90817 1.69059 1.49645 1.38044 1.20793 0.86319 0.85513 1.02252 0.89502 1.44662 1.60850 1.23634 1.08010 1.16248 0.79027 0.81316 0.84085 1.90957 1.54436 1.66009 1.39072 1.44948 1.60316 1.21500 1.11511 1.21072 0.99228 0.93867 0.83322 1.21575 0.99704 0.93449 0.98847 1.18952 0.95137 0.94778 0.92654 1.21706 1.35473 1.05999 0.94493 0.91306 1.26070 0.96993 1.02324 0.94944 1.70131 1.47817 1.40082 0.99713 0.85328 0.77963 0.78413 0.78887 1.17967 1.20685 1.20543 0.93624 0.89423 0.92115 0.90975 0.85708 0.87956 0.89263 0.76436 0.74522 0.75072 0.94313 0.93396 0.90871 0.91405 0.99290 0.98921 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.91 71.98 0.64 -0.45 16 2 C -0.09 -0.80 2.58 -10.66 -0.03 -0.83 16 3 H 0.11 0.70 8.13 -2.39 -0.02 0.68 16 4 C -0.13 -0.40 5.28 30.68 0.16 -0.24 16 5 C 0.10 0.41 7.17 86.49 0.62 1.03 16 6 N -0.71 -10.29 5.44 -467.55 -2.54 -12.83 16 7 C 0.49 12.46 7.23 87.74 0.63 13.10 16 8 O -0.60 -23.29 17.35 -3.00 -0.05 -23.35 16 9 C 0.16 3.35 2.28 44.10 0.10 3.45 16 10 H 0.09 2.40 7.58 -2.39 -0.02 2.38 16 11 N -0.71 -15.32 4.20 -462.10 -1.94 -17.26 16 12 C 0.69 22.97 8.51 179.06 1.52 24.49 16 13 O -0.63 -28.22 15.58 -3.97 -0.06 -28.28 16 14 N -0.73 -21.77 5.56 -478.54 -2.66 -24.43 16 15 C 0.15 5.76 5.67 86.38 0.49 6.25 16 16 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 17 C 0.02 1.21 4.97 29.85 0.15 1.36 16 18 C -0.54 -30.51 9.11 25.60 0.23 -30.27 16 19 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 20 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 21 N -0.94 -58.43 13.29 21.45 0.28 -58.14 16 22 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.06 0.46 6.80 -2.38 -0.02 0.45 16 29 H 0.07 0.28 6.96 -2.39 -0.02 0.26 16 30 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.40 5.67 8.80 -92.70 -0.82 4.85 16 34 H 0.42 5.49 6.58 -92.70 -0.61 4.88 16 35 H 0.41 8.87 8.49 -92.71 -0.79 8.09 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 41 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -88.77 343.65 -0.97 -89.74 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -1.17 Total: 13.98 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.15 Total: 14.27 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -6.86 Total: -112.67 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.11 Total: -51.63 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -88.77 -0.97 -89.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193847438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.708 kcal (2) G-P(sol) polarization free energy of solvation -88.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds