Wall clock time and date at job start Tue Mar 31 2020 02:18:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52994 * 109.47036 * 2 1
4 4 N 1.46494 * 109.47150 * 120.00429 * 2 1 3
5 5 C 1.46763 * 124.35036 * 119.99862 * 4 2 1
6 6 C 1.54479 * 105.47413 * 196.99362 * 5 4 2
7 7 C 1.54632 * 101.76218 * 334.58248 * 6 5 4
8 8 H 1.09001 * 110.59828 * 266.06531 * 7 6 5
9 9 N 1.46503 * 110.48012 * 143.47725 * 7 6 5
10 10 C 1.34783 * 119.99449 * 158.77255 * 9 7 6
11 11 O 1.21590 * 119.99935 * 359.97438 * 10 9 7
12 12 N 1.34779 * 119.99768 * 179.97438 * 10 9 7
13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9
14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10
15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12
16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13
17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13
18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14
19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15
21 21 H 1.48504 * 109.46979 * 120.00420 * 19 17 15
22 22 H 1.48498 * 109.46942 * 240.00334 * 19 17 15
23 23 C 1.34415 * 124.34957 * 299.97107 * 4 2 1
24 24 O 1.21284 * 124.94199 * 359.58117 * 23 4 2
25 25 H 1.09002 * 109.47209 * 59.99730 * 1 2 3
26 26 H 1.09004 * 109.47221 * 179.97438 * 1 2 3
27 27 H 1.08999 * 109.46910 * 299.99760 * 1 2 3
28 28 H 1.09008 * 109.46994 * 240.00424 * 2 1 3
29 29 H 1.09001 * 109.47107 * 180.02562 * 3 2 1
30 30 H 1.09002 * 109.47342 * 300.00188 * 3 2 1
31 31 H 1.08999 * 109.47075 * 60.00341 * 3 2 1
32 32 H 1.09005 * 110.24502 * 315.99571 * 5 4 2
33 33 H 1.09003 * 110.24694 * 77.90291 * 5 4 2
34 34 H 1.09000 * 110.96986 * 216.46749 * 6 5 4
35 35 H 1.08994 * 110.96975 * 92.70152 * 6 5 4
36 36 H 0.96992 * 120.00655 * 338.76981 * 9 7 6
37 37 H 0.97000 * 119.99708 * 359.97438 * 12 10 9
38 38 H 1.09002 * 109.47391 * 59.99686 * 13 12 10
39 39 H 1.09001 * 109.46813 * 299.99742 * 13 12 10
40 40 H 1.09001 * 109.47194 * 299.99493 * 14 13 12
41 41 H 1.08992 * 109.47399 * 59.99666 * 14 13 12
42 42 H 0.97000 * 120.00354 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.8656 -1.8888 1.1726
6 6 2.7614 -2.4952 2.5896
7 6 2.4047 -1.2529 3.4385
8 1 3.3050 -0.8032 3.8571
9 7 1.4688 -1.6134 4.5065
10 6 1.3553 -0.8285 5.5963
11 8 2.0298 0.1785 5.6932
12 7 0.4939 -1.1598 6.5786
13 6 0.3701 -0.3064 7.7628
14 6 -0.6666 -0.9042 8.7161
15 6 -0.7936 -0.0266 9.9346
16 1 -0.1950 0.8683 10.0203
17 6 -1.6746 -0.3656 10.9395
18 7 -2.4038 -1.4551 10.8350
19 14 -1.8315 0.7218 12.4503
20 1 -0.9083 1.8783 12.3257
21 1 -3.2281 1.2137 12.5632
22 1 -1.4831 -0.0619 13.6626
23 6 1.7485 -0.3081 2.4561
24 8 1.0772 0.6548 2.7610
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.8934 -0.5138 -0.8901
29 1 3.1300 1.4425 -0.0005
30 1 1.6767 1.9563 -0.8900
31 1 1.6767 1.9562 0.8900
32 1 2.4964 -2.5973 0.4310
33 1 3.8978 -1.6167 0.9522
34 1 3.7146 -2.9210 2.9027
35 1 1.9681 -3.2411 2.6373
36 1 0.9310 -2.4169 4.4293
37 1 -0.0444 -1.9630 6.5010
38 1 0.0530 0.6916 7.4600
39 1 1.3340 -0.2436 8.2678
40 1 -1.6306 -0.9673 8.2113
41 1 -0.3491 -1.9020 9.0188
42 1 -3.0239 -1.6934 11.5418
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000273429419.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:18:34
Heat of formation + Delta-G solvation = -70.637976 kcal
Electronic energy + Delta-G solvation = -22413.371162 eV
Core-core repulsion = 19007.214949 eV
Total energy + Delta-G solvation = -3406.156213 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.94732 -39.17959 -36.49982 -35.84404 -34.64726 -33.38581 -32.68763 -29.95582
-29.08365 -27.41486 -27.09757 -24.57246 -22.78130 -22.18761 -21.04887 -20.54025
-19.00397 -18.16648 -17.00063 -16.83869 -16.25758 -15.79313 -15.11364 -15.01900
-14.47057 -14.29585 -14.04470 -13.87937 -13.84043 -13.59123 -13.25540 -12.98060
-12.89679 -12.35750 -12.27647 -12.19788 -12.07638 -11.50810 -11.49599 -11.33339
-11.11925 -11.01155 -10.56938 -10.31447 -10.06857 -9.85709 -9.50318 -9.19367
-8.90634 -8.83086 -8.43888 -8.18110 -6.04815 -4.06880 2.39610 2.71386
3.17576 3.32113 3.39533 3.45708 3.64449 4.10471 4.20443 4.42788
4.50988 4.55757 4.71942 4.77438 4.81889 4.92056 5.09155 5.25697
5.32447 5.39474 5.39742 5.44486 5.54565 5.60659 5.63840 5.98569
6.04194 6.35623 6.42861 6.48141 6.52613 6.85284 6.97038 7.08191
7.23390 7.62565 7.69639 7.95097 8.16677 8.31350 8.48569 8.98501
9.07632 9.57642 11.07005
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.032170 B = 0.002909 C = 0.002824
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.156071 B = 9622.436957 C = 9912.579232
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.155 3.845
3 C -0.169 4.169
4 N -0.624 5.624
5 C 0.106 3.894
6 C -0.137 4.137
7 C 0.137 3.863
8 H 0.122 0.878
9 N -0.737 5.737
10 C 0.702 3.298
11 O -0.586 6.586
12 N -0.737 5.737
13 C 0.141 3.859
14 C 0.013 3.987
15 C -0.518 4.518
16 H 0.060 0.940
17 C 0.058 3.942
18 N -0.895 5.895
19 Si 0.896 3.104
20 H -0.271 1.271
21 H -0.284 1.284
22 H -0.284 1.284
23 C 0.503 3.497
24 O -0.498 6.498
25 H 0.065 0.935
26 H 0.055 0.945
27 H 0.072 0.928
28 H 0.085 0.915
29 H 0.056 0.944
30 H 0.065 0.935
31 H 0.073 0.927
32 H 0.080 0.920
33 H 0.073 0.927
34 H 0.099 0.901
35 H 0.089 0.911
36 H 0.397 0.603
37 H 0.392 0.608
38 H 0.054 0.946
39 H 0.054 0.946
40 H 0.022 0.978
41 H 0.022 0.978
42 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.269 -5.803 -24.894 27.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.053 3.947
3 C -0.227 4.227
4 N -0.361 5.361
5 C -0.017 4.017
6 C -0.176 4.176
7 C 0.027 3.973
8 H 0.139 0.861
9 N -0.394 5.394
10 C 0.402 3.598
11 O -0.463 6.463
12 N -0.390 5.390
13 C 0.018 3.982
14 C -0.025 4.025
15 C -0.557 4.557
16 H 0.079 0.921
17 C -0.144 4.144
18 N -0.534 5.534
19 Si 0.724 3.276
20 H -0.195 1.195
21 H -0.210 1.210
22 H -0.210 1.210
23 C 0.288 3.712
24 O -0.370 6.370
25 H 0.084 0.916
26 H 0.074 0.926
27 H 0.091 0.909
28 H 0.103 0.897
29 H 0.075 0.925
30 H 0.084 0.916
31 H 0.092 0.908
32 H 0.098 0.902
33 H 0.092 0.908
34 H 0.118 0.882
35 H 0.107 0.893
36 H 0.231 0.769
37 H 0.225 0.775
38 H 0.073 0.927
39 H 0.072 0.928
40 H 0.040 0.960
41 H 0.040 0.960
42 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 10.360 -4.354 -24.540 26.991
hybrid contribution -0.684 -0.341 0.651 1.004
sum 9.676 -4.695 -23.889 26.198
Atomic orbital electron populations
1.22187 0.94731 1.02291 1.03416 1.20906 0.94458 0.93138 0.86237
1.22193 1.01187 0.95902 1.03444 1.48462 1.51908 1.29601 1.06169
1.22041 0.95271 0.86759 0.97662 1.22911 1.04329 0.96803 0.93531
1.21325 0.94089 0.94956 0.86963 0.86059 1.44848 1.46294 1.28913
1.19342 1.16002 0.81218 0.82898 0.79677 1.90903 1.48693 1.26615
1.80063 1.45479 1.43117 1.29583 1.20860 1.21591 1.00509 0.93061
0.83036 1.19329 0.93155 0.96771 0.93218 1.21109 1.22753 1.09060
1.02786 0.92146 1.24997 0.95490 0.95301 0.98575 1.69967 1.25317
1.24376 1.33791 0.86458 0.77934 0.80624 0.82565 1.19545 1.20974
1.20974 1.21390 0.80567 0.85723 0.83544 1.90741 1.37750 1.27521
1.80959 0.91558 0.92581 0.90871 0.89661 0.92538 0.91579 0.90787
0.90210 0.90841 0.88234 0.89265 0.76888 0.77494 0.92745 0.92782
0.95980 0.95977 0.92969
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.54 9.20 37.16 0.34 -1.20 16
2 C 0.15 1.30 3.47 -67.93 -0.24 1.07 16
3 C -0.17 -1.56 9.20 37.15 0.34 -1.22 16
4 N -0.62 -5.89 2.83 -164.84 -0.47 -6.36 16
5 C 0.11 0.58 7.30 -3.12 -0.02 0.56 16
6 C -0.14 -0.81 6.87 -25.10 -0.17 -0.98 16
7 C 0.14 1.58 3.23 -67.94 -0.22 1.36 16
8 H 0.12 1.56 7.66 -51.93 -0.40 1.16 16
9 N -0.74 -9.80 5.16 -58.68 -0.30 -10.10 16
10 C 0.70 13.16 8.52 -86.91 -0.74 12.42 16
11 O -0.59 -13.51 16.05 5.29 0.08 -13.43 16
12 N -0.74 -13.83 5.56 -65.22 -0.36 -14.20 16
13 C 0.14 3.19 5.61 -4.04 -0.02 3.17 16
14 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16
15 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16
16 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16
17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
18 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16
19 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16
20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16
21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
23 C 0.50 6.88 7.04 -10.86 -0.08 6.80 16
24 O -0.50 -9.32 15.08 5.55 0.08 -9.23 16
25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
27 H 0.07 0.93 6.80 -51.93 -0.35 0.57 16
28 H 0.09 0.49 8.07 -51.92 -0.42 0.07 16
29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.07 0.94 6.77 -51.93 -0.35 0.59 16
32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16
33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
34 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16
35 H 0.09 0.43 7.80 -51.93 -0.41 0.02 16
36 H 0.40 3.98 8.40 -40.82 -0.34 3.63 16
37 H 0.39 6.26 8.49 -40.82 -0.35 5.92 16
38 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16
39 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16
40 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16
41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
LS Contribution 348.51 15.07 5.25 5.25
Total: -1.00 -37.02 348.51 -8.16 -45.19
By element:
Atomic # 1 Polarization: 10.10 SS G_CDS: -6.81 Total: 3.30 kcal
Atomic # 6 Polarization: 9.99 SS G_CDS: -1.36 Total: 8.63 kcal
Atomic # 7 Polarization: -56.12 SS G_CDS: -0.40 Total: -56.51 kcal
Atomic # 8 Polarization: -22.83 SS G_CDS: 0.17 Total: -22.66 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -37.02 -8.16 -45.19 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273429419.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.452 kcal
(2) G-P(sol) polarization free energy of solvation -37.024 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds