Wall clock time and date at job start Tue Mar 31 2020 02:18:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52994 * 109.47036 * 2 1
4 4 N 1.46494 * 109.47150 * 120.00429 * 2 1 3
5 5 C 1.46763 * 124.35036 * 119.99862 * 4 2 1
6 6 C 1.54479 * 105.47413 * 196.99362 * 5 4 2
7 7 C 1.54632 * 101.76218 * 334.58248 * 6 5 4
8 8 H 1.09001 * 110.59828 * 266.06531 * 7 6 5
9 9 N 1.46503 * 110.48012 * 143.47725 * 7 6 5
10 10 C 1.34783 * 119.99449 * 158.77255 * 9 7 6
11 11 O 1.21590 * 119.99935 * 359.97438 * 10 9 7
12 12 N 1.34779 * 119.99768 * 179.97438 * 10 9 7
13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9
14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10
15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12
16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13
17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13
18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14
19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15
21 21 H 1.48504 * 109.46979 * 120.00420 * 19 17 15
22 22 H 1.48498 * 109.46942 * 240.00334 * 19 17 15
23 23 C 1.34415 * 124.34957 * 299.97107 * 4 2 1
24 24 O 1.21284 * 124.94199 * 359.58117 * 23 4 2
25 25 H 1.09002 * 109.47209 * 59.99730 * 1 2 3
26 26 H 1.09004 * 109.47221 * 179.97438 * 1 2 3
27 27 H 1.08999 * 109.46910 * 299.99760 * 1 2 3
28 28 H 1.09008 * 109.46994 * 240.00424 * 2 1 3
29 29 H 1.09001 * 109.47107 * 180.02562 * 3 2 1
30 30 H 1.09002 * 109.47342 * 300.00188 * 3 2 1
31 31 H 1.08999 * 109.47075 * 60.00341 * 3 2 1
32 32 H 1.09005 * 110.24502 * 315.99571 * 5 4 2
33 33 H 1.09003 * 110.24694 * 77.90291 * 5 4 2
34 34 H 1.09000 * 110.96986 * 216.46749 * 6 5 4
35 35 H 1.08994 * 110.96975 * 92.70152 * 6 5 4
36 36 H 0.96992 * 120.00655 * 338.76981 * 9 7 6
37 37 H 0.97000 * 119.99708 * 359.97438 * 12 10 9
38 38 H 1.09002 * 109.47391 * 59.99686 * 13 12 10
39 39 H 1.09001 * 109.46813 * 299.99742 * 13 12 10
40 40 H 1.09001 * 109.47194 * 299.99493 * 14 13 12
41 41 H 1.08992 * 109.47399 * 59.99666 * 14 13 12
42 42 H 0.97000 * 120.00354 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.8656 -1.8888 1.1726
6 6 2.7614 -2.4952 2.5896
7 6 2.4047 -1.2529 3.4385
8 1 3.3050 -0.8032 3.8571
9 7 1.4688 -1.6134 4.5065
10 6 1.3553 -0.8285 5.5963
11 8 2.0298 0.1785 5.6932
12 7 0.4939 -1.1598 6.5786
13 6 0.3701 -0.3064 7.7628
14 6 -0.6666 -0.9042 8.7161
15 6 -0.7936 -0.0266 9.9346
16 1 -0.1950 0.8683 10.0203
17 6 -1.6746 -0.3656 10.9395
18 7 -2.4038 -1.4551 10.8350
19 14 -1.8315 0.7218 12.4503
20 1 -0.9083 1.8783 12.3257
21 1 -3.2281 1.2137 12.5632
22 1 -1.4831 -0.0619 13.6626
23 6 1.7485 -0.3081 2.4561
24 8 1.0772 0.6548 2.7610
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.8934 -0.5138 -0.8901
29 1 3.1300 1.4425 -0.0005
30 1 1.6767 1.9563 -0.8900
31 1 1.6767 1.9562 0.8900
32 1 2.4964 -2.5973 0.4310
33 1 3.8978 -1.6167 0.9522
34 1 3.7146 -2.9210 2.9027
35 1 1.9681 -3.2411 2.6373
36 1 0.9310 -2.4169 4.4293
37 1 -0.0444 -1.9630 6.5010
38 1 0.0530 0.6916 7.4600
39 1 1.3340 -0.2436 8.2678
40 1 -1.6306 -0.9673 8.2113
41 1 -0.3491 -1.9020 9.0188
42 1 -3.0239 -1.6934 11.5418
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273429419.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:18:33
Heat of formation + Delta-G solvation = -99.318257 kcal
Electronic energy + Delta-G solvation = -22414.614833 eV
Core-core repulsion = 19007.214949 eV
Total energy + Delta-G solvation = -3407.399883 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.90328 -40.58297 -37.50154 -36.96348 -36.29215 -34.88106 -34.30634 -31.57666
-30.14294 -28.15624 -28.07265 -26.51310 -23.63193 -23.09222 -22.71312 -22.04190
-19.91286 -19.57896 -18.46520 -17.97136 -17.65045 -16.82232 -16.51984 -16.47653
-16.15619 -15.46786 -15.20823 -15.09491 -14.85376 -14.62416 -14.55269 -14.29951
-13.99596 -13.71883 -13.21949 -13.04849 -12.96534 -12.93035 -12.74916 -12.51990
-12.31130 -12.24884 -12.18875 -11.95578 -11.68280 -11.50721 -11.25727 -11.19180
-10.61271 -10.19043 -9.68705 -9.66915 -8.24704 -6.34888 1.32056 1.40650
1.41598 1.55238 1.84349 2.03336 2.24184 2.41391 3.09886 3.30308
3.40510 3.55449 3.91383 4.02613 4.06694 4.11491 4.29781 4.44416
4.50136 4.55574 4.67356 4.67916 4.81497 4.84580 4.85404 4.87211
5.00294 5.08573 5.22443 5.27634 5.29941 5.40997 5.50887 5.58393
5.74350 5.77996 5.97884 6.16722 6.17915 6.77860 7.09274 7.22952
7.34286 7.59536 8.87570
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.032170 B = 0.002909 C = 0.002824
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.156071 B = 9622.436957 C = 9912.579232
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.149 3.851
3 C -0.167 4.167
4 N -0.614 5.614
5 C 0.101 3.899
6 C -0.119 4.119
7 C 0.126 3.874
8 H 0.104 0.896
9 N -0.716 5.716
10 C 0.699 3.301
11 O -0.633 6.633
12 N -0.732 5.732
13 C 0.161 3.839
14 C 0.026 3.974
15 C -0.547 4.547
16 H 0.057 0.943
17 C 0.007 3.993
18 N -0.926 5.926
19 Si 0.966 3.034
20 H -0.267 1.267
21 H -0.277 1.277
22 H -0.273 1.273
23 C 0.489 3.511
24 O -0.564 6.564
25 H 0.084 0.916
26 H 0.064 0.936
27 H 0.028 0.972
28 H 0.130 0.870
29 H 0.062 0.938
30 H 0.085 0.915
31 H 0.028 0.972
32 H 0.115 0.885
33 H 0.094 0.906
34 H 0.127 0.873
35 H 0.108 0.892
36 H 0.415 0.585
37 H 0.407 0.593
38 H 0.034 0.966
39 H 0.046 0.954
40 H 0.006 0.994
41 H 0.013 0.987
42 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.269 -7.752 -26.755 30.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.048 3.952
3 C -0.225 4.225
4 N -0.349 5.349
5 C -0.020 4.020
6 C -0.157 4.157
7 C 0.017 3.983
8 H 0.121 0.879
9 N -0.373 5.373
10 C 0.399 3.601
11 O -0.514 6.514
12 N -0.387 5.387
13 C 0.037 3.963
14 C -0.012 4.012
15 C -0.586 4.586
16 H 0.075 0.925
17 C -0.191 4.191
18 N -0.565 5.565
19 Si 0.791 3.209
20 H -0.191 1.191
21 H -0.202 1.202
22 H -0.199 1.199
23 C 0.274 3.726
24 O -0.442 6.442
25 H 0.103 0.897
26 H 0.084 0.916
27 H 0.047 0.953
28 H 0.148 0.852
29 H 0.081 0.919
30 H 0.104 0.896
31 H 0.047 0.953
32 H 0.133 0.867
33 H 0.113 0.887
34 H 0.145 0.855
35 H 0.126 0.874
36 H 0.253 0.747
37 H 0.243 0.757
38 H 0.052 0.948
39 H 0.064 0.936
40 H 0.025 0.975
41 H 0.032 0.968
42 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 11.378 -6.403 -26.486 29.529
hybrid contribution -0.973 0.239 1.110 1.495
sum 10.405 -6.164 -25.376 28.110
Atomic orbital electron populations
1.22145 0.95533 1.02426 1.02115 1.21146 0.93919 0.92975 0.87184
1.22163 1.01493 0.96619 1.02183 1.48601 1.51014 1.30266 1.05049
1.22447 0.95861 0.85601 0.98138 1.23004 1.06298 0.94336 0.92098
1.21627 0.92519 0.97731 0.86469 0.87868 1.44655 1.46313 1.28367
1.17988 1.16191 0.80528 0.82802 0.80590 1.90868 1.50454 1.28862
1.81191 1.45156 1.43718 1.29682 1.20117 1.21060 0.98973 0.92464
0.83814 1.19117 0.93016 0.96036 0.93004 1.21489 1.23283 1.09563
1.04220 0.92502 1.25869 0.94905 0.96680 1.01677 1.70059 1.25743
1.25747 1.34997 0.85380 0.78120 0.78794 0.78651 1.19140 1.20211
1.19886 1.21814 0.80089 0.85216 0.85445 1.90711 1.40914 1.30276
1.82277 0.89700 0.91648 0.95320 0.85209 0.91896 0.89598 0.95273
0.86685 0.88744 0.85507 0.87355 0.74701 0.75736 0.94757 0.93569
0.97533 0.96834 0.92483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.87 9.20 71.98 0.66 -2.20 16
2 C 0.15 2.19 3.47 44.99 0.16 2.35 16
3 C -0.17 -3.00 9.20 71.98 0.66 -2.34 16
4 N -0.61 -10.38 2.83 -794.04 -2.25 -12.63 16
5 C 0.10 0.65 7.30 86.83 0.63 1.29 16
6 C -0.12 -0.94 6.87 31.65 0.22 -0.73 16
7 C 0.13 2.81 3.23 44.98 0.15 2.96 16
8 H 0.10 2.70 7.66 -2.39 -0.02 2.68 16
9 N -0.72 -18.75 5.16 -457.82 -2.36 -21.11 16
10 C 0.70 26.90 8.52 179.05 1.53 28.43 16
11 O -0.63 -30.59 16.05 -4.00 -0.06 -30.66 16
12 N -0.73 -28.14 5.56 -478.52 -2.66 -30.80 16
13 C 0.16 7.59 5.61 86.38 0.48 8.08 16
14 C 0.03 1.36 5.09 29.85 0.15 1.52 16
15 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16
16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16
17 C 0.01 0.43 5.46 84.66 0.46 0.89 16
18 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16
19 Si 0.97 44.87 29.54 68.60 2.03 46.90 16
20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16
21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16
22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16
23 C 0.49 13.53 7.04 87.90 0.62 14.15 16
24 O -0.56 -22.68 15.08 -3.04 -0.05 -22.72 16
25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
27 H 0.03 0.76 6.80 -2.39 -0.02 0.74 16
28 H 0.13 0.85 8.07 -2.38 -0.02 0.83 16
29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
31 H 0.03 0.79 6.77 -2.39 -0.02 0.77 16
32 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16
33 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16
34 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16
35 H 0.11 0.51 7.80 -2.39 -0.02 0.49 16
36 H 0.42 7.66 8.40 -92.71 -0.78 6.88 16
37 H 0.41 13.06 8.49 -92.71 -0.79 12.27 16
38 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16
39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16
40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
41 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16
42 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16
Total: -1.00 -86.35 348.51 0.34 -86.01
By element:
Atomic # 1 Polarization: 17.75 SS G_CDS: -0.54 Total: 17.21 kcal
Atomic # 6 Polarization: 16.85 SS G_CDS: 5.95 Total: 22.80 kcal
Atomic # 7 Polarization: -112.55 SS G_CDS: -6.99 Total: -119.54 kcal
Atomic # 8 Polarization: -53.27 SS G_CDS: -0.11 Total: -53.38 kcal
Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal
Total: -86.35 0.34 -86.01 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273429419.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.310 kcal
(2) G-P(sol) polarization free energy of solvation -86.352 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.318 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds