Wall clock time and date at job start Tue Mar 31 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.17763 * 2 1 4 4 C 1.52992 * 109.21808 * 119.36129 * 2 1 3 5 5 N 1.47266 * 108.18906 * 167.05619 * 4 2 1 6 6 C 1.34774 * 121.35480 * 118.51425 * 5 4 2 7 7 O 1.21593 * 120.00034 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00111 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00001 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47437 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47466 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47069 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99829 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00287 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00119 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47374 * 89.99407 * 16 14 12 18 18 H 1.48503 * 109.47043 * 210.00014 * 16 14 12 19 19 H 1.48507 * 109.46581 * 329.99352 * 16 14 12 20 20 C 1.47048 * 117.29469 * 298.49765 * 5 4 2 21 21 C 1.50443 * 108.98955 * 42.67598 * 20 5 4 22 22 O 1.21282 * 118.49068 * 167.35637 * 21 20 5 23 23 N 1.33565 * 122.88491 * 347.46505 * 21 20 5 24 24 C 1.46497 * 117.64282 * 184.23921 * 23 21 20 25 25 H 1.09001 * 109.46893 * 294.56280 * 1 2 3 26 26 H 1.09001 * 109.47318 * 54.55535 * 1 2 3 27 27 H 1.08993 * 109.47261 * 174.56056 * 1 2 3 28 28 H 1.09002 * 109.72077 * 47.38086 * 4 2 1 29 29 H 1.09000 * 109.71548 * 286.72529 * 4 2 1 30 30 H 0.96995 * 120.00394 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.47013 * 300.00066 * 9 8 6 32 32 H 1.09004 * 109.47371 * 59.99420 * 9 8 6 33 33 H 1.09002 * 109.47137 * 300.00069 * 10 9 8 34 34 H 1.09004 * 109.47250 * 59.99424 * 10 9 8 35 35 H 1.09003 * 109.47236 * 299.99661 * 11 10 9 36 36 H 1.08996 * 109.47363 * 60.00293 * 11 10 9 37 37 H 0.96993 * 120.00377 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.57090 * 162.56007 * 20 5 4 39 39 H 1.09003 * 109.56448 * 282.79638 * 20 5 4 40 40 H 1.09006 * 109.46995 * 214.23518 * 24 23 21 41 41 H 1.09004 * 109.47854 * 334.23675 * 24 23 21 42 42 H 1.09004 * 109.47366 * 94.24134 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8880 1.0295 0.0000 4 6 2.0336 -0.7083 1.2591 5 7 3.4724 -0.9742 1.0926 6 6 4.3855 -0.4405 1.9279 7 8 4.0273 0.2775 2.8416 8 7 5.6956 -0.7024 1.7506 9 6 6.6880 -0.1226 2.6589 10 6 8.0884 -0.5746 2.2401 11 6 9.1248 0.0304 3.1891 12 6 10.5041 -0.4154 2.7768 13 1 10.6290 -1.0649 1.9230 14 6 11.6065 0.0059 3.4896 15 7 11.4545 0.7972 4.5290 16 14 13.3163 -0.5460 2.9782 17 1 13.8811 0.4265 2.0085 18 1 14.1923 -0.6170 4.1753 19 1 13.2347 -1.8865 2.3444 20 6 3.8725 -1.8461 -0.0219 21 6 3.0783 -1.4737 -1.2442 22 8 3.4263 -1.9180 -2.3177 23 7 2.0093 -0.6743 -1.1987 24 6 1.2650 -0.4632 -2.4427 25 1 -0.3633 0.4272 0.9347 26 1 -0.3634 0.5960 -0.8372 27 1 -0.3633 -1.0230 -0.0974 28 1 1.4986 -1.6488 1.3909 29 1 1.8758 -0.0698 2.1283 30 1 5.9814 -1.2748 1.0216 31 1 6.6287 0.9649 2.6156 32 1 6.4880 -0.4570 3.6770 33 1 8.1474 -1.6622 2.2838 34 1 8.2887 -0.2406 1.2220 35 1 9.0660 1.1179 3.1458 36 1 8.9244 -0.3041 4.2069 37 1 12.2301 1.0939 5.0303 38 1 4.9356 -1.7161 -0.2237 39 1 3.6749 -2.8859 0.2390 40 1 0.8738 0.5540 -2.4639 41 1 1.9290 -0.6148 -3.2937 42 1 0.4383 -1.1715 -2.4962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281794916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:26 Heat of formation + Delta-G solvation = -60.053929 kcal Electronic energy + Delta-G solvation = -22355.635143 eV Core-core repulsion = 18949.937889 eV Total energy + Delta-G solvation = -3405.697254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21986 -39.60696 -37.30402 -35.55975 -35.27150 -33.33871 -32.05201 -31.08985 -28.92400 -27.97426 -26.67625 -25.08215 -23.17180 -22.76706 -20.79370 -20.36757 -18.96780 -18.24707 -17.75751 -16.52938 -16.28311 -16.26775 -15.92305 -15.52574 -14.84372 -14.52676 -14.46220 -14.15007 -13.76237 -13.62842 -13.55001 -12.99440 -12.68066 -12.54364 -12.30383 -12.26205 -11.95751 -11.78778 -11.76006 -11.69312 -10.90656 -10.76769 -10.63780 -10.57578 -10.11526 -9.87607 -9.46040 -9.23285 -9.12968 -9.05095 -8.65887 -8.37123 -6.01823 -4.04877 2.17811 2.25544 2.64831 3.15689 3.31360 3.37718 3.40628 3.80538 3.95810 4.23185 4.44704 4.48556 4.59496 4.72388 4.89542 5.00663 5.02917 5.09876 5.22517 5.33226 5.34085 5.38724 5.53918 5.60799 5.65588 5.78077 5.83534 6.05684 6.15177 6.43988 6.59658 6.62481 6.88442 6.98836 6.99714 7.63440 7.69010 7.75800 7.89147 7.96942 8.37728 8.54675 9.01814 9.59410 11.09489 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030787 B = 0.002881 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.265662 B = 9717.203613 C =10384.722532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 H 0.081 0.919 4 C 0.121 3.879 5 N -0.640 5.640 6 C 0.710 3.290 7 O -0.583 6.583 8 N -0.739 5.739 9 C 0.133 3.867 10 C -0.121 4.121 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.101 3.899 21 C 0.511 3.489 22 O -0.543 6.543 23 N -0.600 5.600 24 C 0.073 3.927 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.393 0.607 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.347 -3.709 -10.536 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.380 5.380 6 C 0.411 3.589 7 O -0.461 6.461 8 N -0.394 5.394 9 C 0.011 3.989 10 C -0.160 4.160 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.026 4.026 21 C 0.298 3.702 22 O -0.421 6.421 23 N -0.333 5.333 24 C -0.069 4.069 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.229 0.771 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.256 -3.298 -10.217 26.526 hybrid contribution 1.102 -0.513 -0.593 1.352 sum -23.154 -3.811 -10.810 25.836 Atomic orbital electron populations 1.22154 0.93173 1.03140 1.03533 1.21471 0.95282 0.97063 0.84274 0.90110 1.21881 0.79147 1.01417 0.97866 1.47358 1.06617 1.52771 1.31276 1.15807 0.81087 0.80216 0.81772 1.90926 1.79584 1.41983 1.33602 1.45572 1.04578 1.54232 1.35034 1.21575 0.86921 0.98052 0.92392 1.21906 0.92282 1.00588 1.01175 1.19021 0.91968 0.96254 0.94060 1.21206 0.91390 1.29997 1.13485 0.92628 1.25026 0.99296 0.95132 0.94994 1.69961 1.30249 1.34371 1.18723 0.86583 0.84244 0.79069 0.78032 1.20657 1.21207 1.19875 1.21778 1.00648 0.96363 0.83792 1.20305 0.80577 0.78467 0.90830 1.90763 1.68059 1.53663 1.29571 1.47305 1.28290 1.47213 1.10518 1.21745 0.96719 1.01237 0.87220 0.90390 0.91387 0.91611 0.90436 0.86614 0.77113 0.91781 0.91693 0.92672 0.92723 0.96239 0.96202 0.92920 0.86746 0.87661 0.91226 0.89838 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 8.51 37.16 0.32 -0.38 16 2 C 0.12 0.88 3.51 -68.40 -0.24 0.64 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.12 1.00 5.83 -3.63 -0.02 0.98 16 5 N -0.64 -6.95 2.98 -179.88 -0.54 -7.48 16 6 C 0.71 10.44 8.34 -86.92 -0.72 9.72 16 7 O -0.58 -10.68 15.82 5.28 0.08 -10.59 16 8 N -0.74 -10.63 5.46 -65.23 -0.36 -10.99 16 9 C 0.13 2.33 5.67 -4.05 -0.02 2.31 16 10 C -0.12 -2.36 5.27 -26.74 -0.14 -2.50 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.10 0.94 6.43 -5.02 -0.03 0.91 16 21 C 0.51 5.55 7.59 -11.65 -0.09 5.47 16 22 O -0.54 -7.64 16.14 5.56 0.09 -7.55 16 23 N -0.60 -5.24 3.12 -175.03 -0.55 -5.79 16 24 C 0.07 0.52 9.04 59.85 0.54 1.06 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.25 6.89 -51.93 -0.36 -0.11 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.12 1.07 7.06 -51.93 -0.37 0.70 16 30 H 0.39 4.71 6.11 -40.82 -0.25 4.46 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.11 1.04 5.95 -51.93 -0.31 0.73 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.36 7.21 -51.93 -0.37 -0.01 16 41 H 0.08 0.74 6.97 -51.93 -0.36 0.38 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -34.73 341.27 -8.00 -42.74 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.63 Total: -1.24 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.96 Total: 5.32 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.70 Total: -50.33 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.17 Total: -18.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.73 -8.00 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281794916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.319 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds