Wall clock time and date at job start Tue Mar 31 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.17763 * 2 1 4 4 C 1.52992 * 109.21808 * 119.36129 * 2 1 3 5 5 N 1.47266 * 108.18906 * 167.05619 * 4 2 1 6 6 C 1.34774 * 121.35480 * 118.51425 * 5 4 2 7 7 O 1.21593 * 120.00034 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00111 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00001 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47437 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47466 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47069 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99829 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00287 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00119 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47374 * 89.99407 * 16 14 12 18 18 H 1.48503 * 109.47043 * 210.00014 * 16 14 12 19 19 H 1.48507 * 109.46581 * 329.99352 * 16 14 12 20 20 C 1.47048 * 117.29469 * 298.49765 * 5 4 2 21 21 C 1.50443 * 108.98955 * 42.67598 * 20 5 4 22 22 O 1.21282 * 118.49068 * 167.35637 * 21 20 5 23 23 N 1.33565 * 122.88491 * 347.46505 * 21 20 5 24 24 C 1.46497 * 117.64282 * 184.23921 * 23 21 20 25 25 H 1.09001 * 109.46893 * 294.56280 * 1 2 3 26 26 H 1.09001 * 109.47318 * 54.55535 * 1 2 3 27 27 H 1.08993 * 109.47261 * 174.56056 * 1 2 3 28 28 H 1.09002 * 109.72077 * 47.38086 * 4 2 1 29 29 H 1.09000 * 109.71548 * 286.72529 * 4 2 1 30 30 H 0.96995 * 120.00394 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.47013 * 300.00066 * 9 8 6 32 32 H 1.09004 * 109.47371 * 59.99420 * 9 8 6 33 33 H 1.09002 * 109.47137 * 300.00069 * 10 9 8 34 34 H 1.09004 * 109.47250 * 59.99424 * 10 9 8 35 35 H 1.09003 * 109.47236 * 299.99661 * 11 10 9 36 36 H 1.08996 * 109.47363 * 60.00293 * 11 10 9 37 37 H 0.96993 * 120.00377 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.57090 * 162.56007 * 20 5 4 39 39 H 1.09003 * 109.56448 * 282.79638 * 20 5 4 40 40 H 1.09006 * 109.46995 * 214.23518 * 24 23 21 41 41 H 1.09004 * 109.47854 * 334.23675 * 24 23 21 42 42 H 1.09004 * 109.47366 * 94.24134 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8880 1.0295 0.0000 4 6 2.0336 -0.7083 1.2591 5 7 3.4724 -0.9742 1.0926 6 6 4.3855 -0.4405 1.9279 7 8 4.0273 0.2775 2.8416 8 7 5.6956 -0.7024 1.7506 9 6 6.6880 -0.1226 2.6589 10 6 8.0884 -0.5746 2.2401 11 6 9.1248 0.0304 3.1891 12 6 10.5041 -0.4154 2.7768 13 1 10.6290 -1.0649 1.9230 14 6 11.6065 0.0059 3.4896 15 7 11.4545 0.7972 4.5290 16 14 13.3163 -0.5460 2.9782 17 1 13.8811 0.4265 2.0085 18 1 14.1923 -0.6170 4.1753 19 1 13.2347 -1.8865 2.3444 20 6 3.8725 -1.8461 -0.0219 21 6 3.0783 -1.4737 -1.2442 22 8 3.4263 -1.9180 -2.3177 23 7 2.0093 -0.6743 -1.1987 24 6 1.2650 -0.4632 -2.4427 25 1 -0.3633 0.4272 0.9347 26 1 -0.3634 0.5960 -0.8372 27 1 -0.3633 -1.0230 -0.0974 28 1 1.4986 -1.6488 1.3909 29 1 1.8758 -0.0698 2.1283 30 1 5.9814 -1.2748 1.0216 31 1 6.6287 0.9649 2.6156 32 1 6.4880 -0.4570 3.6770 33 1 8.1474 -1.6622 2.2838 34 1 8.2887 -0.2406 1.2220 35 1 9.0660 1.1179 3.1458 36 1 8.9244 -0.3041 4.2069 37 1 12.2301 1.0939 5.0303 38 1 4.9356 -1.7161 -0.2237 39 1 3.6749 -2.8859 0.2390 40 1 0.8738 0.5540 -2.4639 41 1 1.9290 -0.6148 -3.2937 42 1 0.4383 -1.1715 -2.4962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281794916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:26 Heat of formation + Delta-G solvation = -84.415819 kcal Electronic energy + Delta-G solvation = -22356.691554 eV Core-core repulsion = 18949.937889 eV Total energy + Delta-G solvation = -3406.753665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.08330 -40.67049 -38.14697 -36.97472 -36.26584 -35.18441 -33.14460 -32.43631 -29.79491 -28.90556 -28.04054 -26.08876 -24.63131 -23.62303 -22.32560 -21.57530 -19.90360 -19.20259 -18.69396 -18.33479 -17.20934 -17.11603 -16.99893 -16.65445 -16.46318 -15.81506 -15.67477 -15.37646 -14.74753 -14.51667 -14.24883 -14.10011 -13.79243 -13.69686 -13.47277 -13.24087 -13.07866 -12.87667 -12.75258 -12.53792 -12.48284 -12.35273 -12.30858 -11.77671 -11.67451 -11.46421 -11.23776 -11.09418 -10.54620 -10.30504 -9.89504 -9.64507 -8.18998 -6.30151 1.32105 1.37452 1.42334 1.43232 1.54293 1.86794 2.04048 2.42036 2.74949 3.14890 3.23794 3.60972 3.86996 3.97703 4.09735 4.16199 4.23202 4.27846 4.44618 4.49486 4.56315 4.57966 4.68848 4.84129 4.88049 4.95350 4.96231 5.01647 5.11706 5.16844 5.22738 5.39634 5.43027 5.53223 5.68401 5.72177 5.85323 6.23469 6.25796 6.75355 6.87473 6.93850 7.39120 7.40446 8.93121 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030787 B = 0.002881 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.265662 B = 9717.203613 C =10384.722532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.071 0.929 4 C 0.116 3.884 5 N -0.632 5.632 6 C 0.708 3.292 7 O -0.623 6.623 8 N -0.732 5.732 9 C 0.149 3.851 10 C -0.103 4.103 11 C 0.025 3.975 12 C -0.541 4.541 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.966 3.034 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.261 1.261 20 C 0.101 3.899 21 C 0.506 3.494 22 O -0.581 6.581 23 N -0.597 5.597 24 C 0.071 3.929 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.407 0.593 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.065 0.935 35 H -0.007 1.007 36 H -0.005 1.005 37 H 0.263 0.737 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.337 -4.866 -11.868 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.089 0.911 4 C -0.007 4.007 5 N -0.371 5.371 6 C 0.410 3.590 7 O -0.504 6.504 8 N -0.388 5.388 9 C 0.025 3.975 10 C -0.141 4.141 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.083 0.917 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.024 4.024 21 C 0.294 3.706 22 O -0.462 6.462 23 N -0.329 5.329 24 C -0.071 4.071 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.245 0.755 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.011 0.989 36 H 0.013 0.987 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.303 -4.473 -11.590 28.188 hybrid contribution 1.318 -0.120 -0.181 1.336 sum -23.984 -4.593 -11.772 27.110 Atomic orbital electron populations 1.22122 0.90496 1.03933 1.04668 1.21527 0.97249 0.96003 0.83018 0.91061 1.22129 0.77709 1.02665 0.98193 1.47337 1.07062 1.52073 1.30593 1.15888 0.81299 0.79986 0.81845 1.90902 1.80222 1.43772 1.35485 1.45256 1.04249 1.54373 1.34952 1.21126 0.86753 0.97207 0.92423 1.21606 0.91571 1.00889 0.99992 1.18926 0.93295 0.94848 0.94218 1.21687 0.92610 1.29940 1.13685 0.91650 1.25999 1.03938 0.95144 0.94930 1.70101 1.31587 1.35740 1.20059 0.85438 0.78676 0.79147 0.77725 1.19914 1.20975 1.18484 1.21915 1.00675 0.97211 0.82648 1.20500 0.80991 0.78517 0.90582 1.90751 1.69230 1.55432 1.30776 1.47448 1.27698 1.46170 1.11598 1.21864 0.96476 1.03051 0.85717 0.89264 0.90304 0.90942 0.88018 0.87531 0.75468 0.93245 0.92866 0.91305 0.91666 0.98884 0.98683 0.92796 0.86472 0.85156 0.89098 0.91909 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.51 71.98 0.61 -0.26 16 2 C 0.13 1.54 3.51 45.15 0.16 1.70 16 3 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.12 1.71 5.83 86.23 0.50 2.21 16 5 N -0.63 -12.76 2.98 -841.29 -2.51 -15.27 16 6 C 0.71 20.35 8.34 179.05 1.49 21.84 16 7 O -0.62 -22.89 15.82 -4.01 -0.06 -22.95 16 8 N -0.73 -20.41 5.46 -478.53 -2.61 -23.03 16 9 C 0.15 5.23 5.67 86.38 0.49 5.72 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.02 1.29 4.97 29.85 0.15 1.44 16 12 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 13 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 14 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 15 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 16 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 C 0.10 1.70 6.43 85.45 0.55 2.25 16 21 C 0.51 10.30 7.59 87.76 0.67 10.97 16 22 O -0.58 -15.96 16.14 -3.04 -0.05 -16.01 16 23 N -0.60 -9.34 3.12 -826.74 -2.58 -11.92 16 24 C 0.07 0.87 9.04 127.77 1.15 2.03 16 25 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.08 0.32 6.89 -2.39 -0.02 0.30 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.10 1.05 8.09 -2.39 -0.02 1.03 16 29 H 0.11 1.85 7.06 -2.39 -0.02 1.83 16 30 H 0.41 9.05 6.11 -92.71 -0.57 8.49 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 34 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.12 1.92 5.95 -2.39 -0.01 1.90 16 39 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 0.72 7.21 -2.38 -0.02 0.70 16 41 H 0.06 1.07 6.97 -2.39 -0.02 1.05 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.16 341.27 1.57 -74.58 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.45 Total: 10.99 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.63 Total: 14.43 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -7.42 Total: -107.02 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.11 Total: -38.97 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -76.16 1.57 -74.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281794916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.833 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds