Wall clock time and date at job start Tue Mar 31 2020 02:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.20887 * 2 1 4 4 C 1.52981 * 109.21394 * 240.66253 * 2 1 3 5 5 N 1.47266 * 108.18980 * 286.39084 * 4 2 1 6 6 C 1.34772 * 121.35482 * 118.47632 * 5 4 2 7 7 O 1.21586 * 119.99902 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00517 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00694 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47676 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47001 * 299.99983 * 10 9 8 12 12 C 1.53002 * 109.46987 * 59.99367 * 10 9 8 13 13 C 1.50694 * 109.47318 * 179.97438 * 10 9 8 14 14 H 1.07996 * 120.00305 * 1.34640 * 13 10 9 15 15 C 1.37885 * 120.00022 * 181.34741 * 13 10 9 16 16 N 1.31513 * 119.99772 * 193.98020 * 15 13 10 17 17 Si 1.86795 * 119.99709 * 13.97334 * 15 13 10 18 18 H 1.48501 * 109.47116 * 84.55242 * 17 15 13 19 19 H 1.48503 * 109.46867 * 204.54772 * 17 15 13 20 20 H 1.48496 * 109.47386 * 324.54980 * 17 15 13 21 21 C 1.47057 * 117.29302 * 298.49875 * 5 4 2 22 22 C 1.50435 * 108.88780 * 42.73776 * 21 5 4 23 23 O 1.21282 * 118.48551 * 167.30579 * 22 21 5 24 24 N 1.33377 * 123.02483 * 347.29095 * 22 21 5 25 25 H 1.09002 * 109.47127 * 300.61795 * 1 2 3 26 26 H 1.08999 * 109.47294 * 60.61701 * 1 2 3 27 27 H 1.09004 * 109.47335 * 180.62397 * 1 2 3 28 28 H 1.09000 * 109.72174 * 46.06918 * 4 2 1 29 29 H 1.09004 * 109.71882 * 166.67576 * 4 2 1 30 30 H 0.97008 * 119.99996 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.46987 * 300.00221 * 9 8 6 32 32 H 1.09006 * 109.47054 * 59.99564 * 9 8 6 33 33 H 1.08998 * 109.46929 * 69.36605 * 11 10 9 34 34 H 1.08997 * 109.46915 * 189.36629 * 11 10 9 35 35 H 1.09000 * 109.46889 * 309.36300 * 11 10 9 36 36 H 1.09005 * 109.46465 * 60.00787 * 12 10 9 37 37 H 1.08999 * 109.46817 * 179.97438 * 12 10 9 38 38 H 1.08993 * 109.47536 * 300.00637 * 12 10 9 39 39 H 0.97005 * 119.99541 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.56279 * 162.55524 * 21 5 4 41 41 H 1.08995 * 109.56617 * 282.79387 * 21 5 4 42 42 H 0.97000 * 117.70726 * 184.60785 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0335 -0.7078 -1.2593 5 7 1.8119 -2.1542 -1.0934 6 6 1.0072 -2.8407 -1.9285 7 8 0.4469 -2.2663 -2.8420 8 7 0.8234 -4.1641 -1.7512 9 6 -0.0509 -4.9105 -2.6592 10 6 -0.0849 -6.3816 -2.2403 11 6 1.3294 -6.9622 -2.3020 12 6 -0.6197 -6.4927 -0.8111 13 6 -0.9847 -7.1492 -3.1740 14 1 -1.4655 -6.6432 -3.9982 15 6 -1.1943 -8.4976 -2.9762 16 7 -1.7436 -9.2238 -3.9251 17 14 -0.6979 -9.2927 -1.3605 18 1 -1.7856 -9.1130 -0.3656 19 1 -0.4582 -10.7424 -1.5753 20 1 0.5446 -8.6549 -0.8561 21 6 2.5041 -2.8189 0.0209 22 6 2.4107 -1.9460 1.2424 23 8 2.7144 -2.4199 2.3167 24 7 2.0094 -0.6748 1.1985 25 1 -0.3633 0.5234 0.8844 26 1 -0.3634 0.5042 -0.8954 27 1 -0.3634 -1.0276 0.0112 28 1 1.4823 -0.3486 -2.1284 29 1 3.0974 -0.5108 -1.3915 30 1 1.2707 -4.6226 -1.0226 31 1 -1.0583 -4.4966 -2.6156 32 1 0.3304 -4.8317 -3.6774 33 1 1.9376 -6.5221 -1.5119 34 1 1.2847 -8.0428 -2.1669 35 1 1.7733 -6.7353 -3.2714 36 1 -1.6273 -6.0791 -0.7672 37 1 -0.6443 -7.5408 -0.5129 38 1 0.0308 -5.9374 -0.1355 39 1 -1.8914 -10.1723 -3.7858 40 1 2.0319 -3.7805 0.2223 41 1 3.5510 -2.9738 -0.2401 42 1 2.0429 -0.1625 2.0215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335588840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:30 Heat of formation + Delta-G solvation = -38.832120 kcal Electronic energy + Delta-G solvation = -23612.123784 eV Core-core repulsion = 20207.346777 eV Total energy + Delta-G solvation = -3404.777008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.03856 -39.39856 -37.36598 -36.52486 -34.68663 -33.27462 -31.60687 -31.22929 -28.12489 -27.23095 -26.40510 -25.49295 -24.63159 -22.96340 -20.75487 -19.40921 -19.15728 -18.39305 -17.36624 -16.78200 -16.24038 -16.04419 -15.44669 -15.18607 -15.12704 -14.52866 -14.26131 -13.98524 -13.79815 -13.18584 -12.99802 -12.92295 -12.69755 -12.52539 -12.25441 -12.22109 -12.05898 -11.76932 -11.65851 -11.33801 -10.62746 -10.44728 -10.31634 -10.18675 -10.08310 -9.89766 -9.51329 -9.15436 -8.96225 -8.69902 -8.51014 -8.41983 -6.15846 -4.13244 2.24992 2.44226 2.94990 3.24041 3.31466 3.32925 3.38801 3.98783 4.11328 4.33153 4.34916 4.64656 4.70687 4.85584 5.06023 5.14959 5.29638 5.39029 5.47571 5.52864 5.71247 5.94980 6.02239 6.03480 6.04832 6.31665 6.37875 6.45889 6.50662 6.58869 6.68136 6.75199 6.86327 6.94294 6.97226 7.20177 7.40850 7.70823 7.82261 8.07769 8.43801 8.72739 8.89569 9.48060 10.97139 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026071 B = 0.004533 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.741235 B = 6175.093739 C = 6741.652230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 H 0.097 0.903 4 C 0.119 3.881 5 N -0.638 5.638 6 C 0.708 3.292 7 O -0.584 6.584 8 N -0.736 5.736 9 C 0.159 3.841 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.513 4.513 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.884 3.116 18 H -0.286 1.286 19 H -0.305 1.305 20 H -0.249 1.249 21 C 0.099 3.901 22 C 0.516 3.484 23 O -0.549 6.549 24 N -0.711 5.711 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.392 0.608 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.299 17.800 8.845 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.115 0.885 4 C -0.005 4.005 5 N -0.379 5.379 6 C 0.410 3.590 7 O -0.462 6.462 8 N -0.392 5.392 9 C 0.037 3.963 10 C 0.027 3.973 11 C -0.199 4.199 12 C -0.204 4.204 13 C -0.550 4.550 14 H 0.095 0.905 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.214 1.214 19 H -0.234 1.234 20 H -0.175 1.175 21 C -0.028 4.028 22 C 0.302 3.698 23 O -0.426 6.426 24 N -0.363 5.363 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.094 0.906 30 H 0.228 0.772 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.922 17.602 8.389 21.443 hybrid contribution 0.328 -0.592 1.586 1.724 sum 9.250 17.010 9.974 21.781 Atomic orbital electron populations 1.22224 0.94230 1.03299 1.02502 1.21439 0.95446 0.96646 0.84967 0.88483 1.21833 1.01628 0.79052 0.97975 1.47319 1.50411 1.08907 1.31312 1.15816 0.79289 0.82143 0.81765 1.90909 1.52848 1.68845 1.33613 1.45694 1.51877 1.06487 1.35105 1.21435 0.92209 0.91043 0.91659 1.18744 0.94131 0.91043 0.93416 1.22293 0.97160 1.01333 0.99105 1.22359 1.00533 0.99680 0.97830 1.20687 1.28365 0.93400 1.12598 0.90477 1.24961 0.94545 0.96892 0.96246 1.69950 1.43963 1.06949 1.31826 0.87310 0.79760 0.76684 0.84532 1.21353 1.23364 1.17525 1.21757 1.00371 0.96728 0.83920 1.20285 0.76226 0.82546 0.90777 1.90813 1.49984 1.72066 1.29723 1.45473 1.65580 1.12114 1.13098 0.92320 0.90793 0.91994 0.86612 0.90568 0.77210 0.92031 0.91839 0.96093 0.92481 0.93314 0.92743 0.93995 0.95402 0.92538 0.86908 0.87699 0.76573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.37 37.16 0.35 -1.02 16 2 C 0.12 0.84 3.87 -68.40 -0.26 0.57 16 3 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 4 C 0.12 1.02 5.89 -3.63 -0.02 1.00 16 5 N -0.64 -7.33 2.75 -179.89 -0.49 -7.83 16 6 C 0.71 11.08 8.34 -86.92 -0.72 10.35 16 7 O -0.58 -11.08 15.82 5.29 0.08 -11.00 16 8 N -0.74 -11.83 4.91 -65.23 -0.32 -12.15 16 9 C 0.16 3.12 4.49 -4.04 -0.02 3.10 16 10 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 11 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16 12 C -0.15 -2.98 7.52 37.16 0.28 -2.70 16 13 C -0.51 -13.59 8.62 -34.44 -0.30 -13.89 16 14 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.08 2.10 5.32 -17.82 -0.09 2.01 16 16 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 17 Si 0.88 21.04 22.79 -169.99 -3.87 17.17 16 18 H -0.29 -6.81 7.10 56.52 0.40 -6.41 16 19 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.25 -5.40 4.65 56.52 0.26 -5.14 16 21 C 0.10 1.01 6.43 -5.02 -0.03 0.98 16 22 C 0.52 5.75 7.84 -11.74 -0.09 5.66 16 23 O -0.55 -8.12 17.80 5.56 0.10 -8.02 16 24 N -0.71 -5.91 5.00 -54.79 -0.27 -6.18 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.71 7.99 -51.93 -0.42 0.30 16 28 H 0.12 1.11 6.98 -51.93 -0.36 0.75 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.39 5.63 3.89 -40.82 -0.16 5.47 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 34 H 0.06 1.23 4.30 -51.93 -0.22 1.00 16 35 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.90 2.25 -51.93 -0.12 0.79 16 38 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.11 1.20 5.95 -51.93 -0.31 0.89 16 41 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.40 2.82 8.80 -40.82 -0.36 2.46 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -33.03 321.32 -6.05 -39.07 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.17 Total: 5.71 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.72 Total: 4.03 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.32 Total: -51.82 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.18 Total: -19.01 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -3.87 Total: 17.17 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.03 -6.05 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335588840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.242 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds