Wall clock time and date at job start Tue Mar 31 2020 02:44:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.47121 * 2 1
4 4 C 1.52998 * 109.47024 * 120.00280 * 2 1 3
5 5 C 1.53002 * 109.46851 * 180.02562 * 4 2 1
6 6 C 1.52996 * 109.46865 * 299.99472 * 5 4 2
7 7 C 1.52995 * 109.47136 * 60.00270 * 6 5 4
8 8 H 1.09005 * 109.47189 * 179.97438 * 7 6 5
9 9 N 1.46506 * 109.47182 * 60.00005 * 7 6 5
10 10 C 1.34773 * 119.99969 * 84.72073 * 9 7 6
11 11 O 1.21586 * 120.00012 * 0.02562 * 10 9 7
12 12 N 1.34774 * 119.99940 * 180.02562 * 10 9 7
13 13 C 1.46498 * 120.00211 * 180.02562 * 12 10 9
14 14 C 1.50698 * 109.47426 * 179.97438 * 13 12 10
15 15 O 1.21297 * 119.99724 * 0.02562 * 14 13 12
16 16 N 1.34778 * 120.00117 * 179.97438 * 14 13 12
17 17 C 1.37102 * 120.00012 * 180.02562 * 16 14 13
18 18 H 1.08005 * 119.99836 * 359.97438 * 17 16 14
19 19 C 1.38945 * 120.00285 * 180.02562 * 17 16 14
20 20 N 1.31409 * 120.00541 * 179.97438 * 19 17 16
21 21 Si 1.86808 * 119.99658 * 359.97438 * 19 17 16
22 22 H 1.48497 * 109.46875 * 90.00102 * 21 19 17
23 23 H 1.48503 * 109.46641 * 209.99976 * 21 19 17
24 24 H 1.48494 * 109.47249 * 329.99944 * 21 19 17
25 25 C 1.52996 * 109.47046 * 239.99969 * 2 1 3
26 26 H 1.09002 * 109.47121 * 180.02562 * 1 2 3
27 27 H 1.09005 * 109.47352 * 299.99779 * 1 2 3
28 28 H 1.08996 * 109.47182 * 59.99953 * 1 2 3
29 29 H 1.09008 * 109.46760 * 299.99700 * 4 2 1
30 30 H 1.08992 * 109.47402 * 59.99883 * 4 2 1
31 31 H 1.08992 * 109.47480 * 59.99603 * 5 4 2
32 32 H 1.09005 * 109.47050 * 179.97438 * 5 4 2
33 33 H 1.09002 * 109.47614 * 299.99990 * 6 5 4
34 34 H 1.09007 * 109.47191 * 180.02562 * 6 5 4
35 35 H 0.97005 * 119.99811 * 265.00126 * 9 7 6
36 36 H 0.97004 * 120.00041 * 359.97438 * 12 10 9
37 37 H 1.08998 * 109.47182 * 299.99924 * 13 12 10
38 38 H 1.09001 * 109.47115 * 59.99869 * 13 12 10
39 39 H 0.96995 * 120.00110 * 359.97438 * 16 14 13
40 40 H 0.96993 * 120.00299 * 179.97438 * 20 19 17
41 41 H 1.09005 * 109.47196 * 59.99876 * 25 2 1
42 42 H 1.09002 * 109.47186 * 299.99991 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5700 -0.7207 1.2495
6 6 4.0804 -1.4416 0.0003
7 6 3.5704 -0.7204 -1.2489
8 1 3.9344 -1.2338 -2.1390
9 7 4.0583 0.6610 -1.2487
10 6 5.2825 0.9434 -1.7366
11 8 5.9818 0.0517 -2.1773
12 7 5.7315 2.2141 -1.7359
13 6 7.0620 2.5212 -2.2667
14 6 7.3196 4.0015 -2.1512
15 8 6.4750 4.7285 -1.6721
16 7 8.4888 4.5175 -2.5793
17 6 8.7233 5.8642 -2.4738
18 1 7.9710 6.5116 -2.0479
19 6 9.9284 6.3962 -2.9156
20 7 10.1531 7.6871 -2.8149
21 14 11.2294 5.2765 -3.6527
22 1 11.0217 5.1752 -5.1196
23 1 12.5771 5.8379 -3.3812
24 1 11.1235 3.9265 -3.0434
25 6 2.0400 -0.7212 -1.2492
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8899
29 1 1.6766 -0.2074 2.1392
30 1 1.6767 -1.7489 1.2492
31 1 3.9330 0.3070 1.2497
32 1 3.9334 -1.2342 2.1397
33 1 3.7175 -2.4695 0.0000
34 1 5.1705 -1.4417 0.0006
35 1 3.5018 1.3718 -0.8936
36 1 5.1735 2.9255 -1.3846
37 1 7.8149 1.9756 -1.6979
38 1 7.1125 2.2246 -3.3144
39 1 9.1646 3.9360 -2.9614
40 1 10.9945 8.0584 -3.1230
41 1 1.6766 -0.2074 -2.1392
42 1 1.6766 -1.7489 -1.2492
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344313756.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:52
Heat of formation + Delta-G solvation = -88.196903 kcal
Electronic energy + Delta-G solvation = -22364.738729 eV
Core-core repulsion = 18957.821104 eV
Total energy + Delta-G solvation = -3406.917625 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.39889 -38.91011 -38.07318 -34.51255 -34.08147 -33.69839 -32.31616 -31.78719
-30.08536 -27.45277 -26.67185 -24.32551 -22.72750 -21.61441 -21.12177 -19.69253
-19.27434 -18.70790 -18.09428 -16.19098 -15.84620 -15.64192 -15.40536 -14.96836
-14.68910 -14.58625 -14.36478 -14.03716 -13.76200 -13.51025 -13.12778 -12.75980
-12.49265 -12.39667 -12.36908 -12.14775 -12.09478 -12.03239 -11.75620 -11.23320
-11.21278 -10.77384 -10.63278 -10.43347 -10.25746 -10.06570 -10.02700 -9.68746
-9.12992 -8.75256 -8.63810 -8.29376 -6.39956 -3.92517 2.81848 3.00748
3.05429 3.13422 3.38042 3.59542 4.04449 4.31867 4.42540 4.45100
4.47187 4.64808 4.87079 4.94848 5.15207 5.16065 5.20140 5.20928
5.36164 5.39869 5.46445 5.55364 5.65038 5.68471 5.77088 5.80917
5.83345 5.88091 5.94647 5.97948 6.07003 6.13048 6.19130 6.60508
6.68427 7.09961 7.46205 8.01451 8.22611 8.45670 8.78935 8.82808
9.30970 9.64936 10.72288
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.034312 B = 0.003017 C = 0.002901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 815.834607 B = 9279.705877 C = 9650.632015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.095 4.095
3 H 0.069 0.931
4 C -0.113 4.113
5 C -0.119 4.119
6 C -0.132 4.132
7 C 0.166 3.834
8 H 0.087 0.913
9 N -0.741 5.741
10 C 0.705 3.295
11 O -0.599 6.599
12 N -0.726 5.726
13 C 0.127 3.873
14 C 0.439 3.561
15 O -0.580 6.580
16 N -0.577 5.577
17 C -0.310 4.310
18 H 0.121 0.879
19 C 0.045 3.955
20 N -0.875 5.875
21 Si 0.879 3.121
22 H -0.269 1.269
23 H -0.275 1.275
24 H -0.267 1.267
25 C -0.122 4.122
26 H 0.054 0.946
27 H 0.054 0.946
28 H 0.055 0.945
29 H 0.061 0.939
30 H 0.061 0.939
31 H 0.063 0.937
32 H 0.060 0.940
33 H 0.068 0.932
34 H 0.069 0.931
35 H 0.395 0.605
36 H 0.407 0.593
37 H 0.082 0.918
38 H 0.082 0.918
39 H 0.374 0.626
40 H 0.275 0.725
41 H 0.069 0.931
42 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.155 -18.382 4.859 24.314
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.113 4.113
3 H 0.088 0.912
4 C -0.151 4.151
5 C -0.157 4.157
6 C -0.170 4.170
7 C 0.061 3.939
8 H 0.105 0.895
9 N -0.397 5.397
10 C 0.405 3.595
11 O -0.478 6.478
12 N -0.384 5.384
13 C -0.002 4.002
14 C 0.225 3.775
15 O -0.464 6.464
16 N -0.215 5.215
17 C -0.438 4.438
18 H 0.139 0.861
19 C -0.159 4.159
20 N -0.514 5.514
21 Si 0.705 3.295
22 H -0.194 1.194
23 H -0.200 1.200
24 H -0.192 1.192
25 C -0.160 4.160
26 H 0.073 0.927
27 H 0.073 0.927
28 H 0.074 0.926
29 H 0.079 0.921
30 H 0.080 0.920
31 H 0.082 0.918
32 H 0.078 0.922
33 H 0.086 0.914
34 H 0.088 0.912
35 H 0.230 0.770
36 H 0.244 0.756
37 H 0.100 0.900
38 H 0.100 0.900
39 H 0.208 0.792
40 H 0.086 0.914
41 H 0.088 0.912
42 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -14.904 -18.493 4.722 24.217
hybrid contribution 0.729 0.017 -0.253 0.772
sum -14.175 -18.477 4.469 23.713
Atomic orbital electron populations
1.21827 0.95060 1.01768 1.01796 1.21145 0.95574 0.99662 0.94946
0.91246 1.21609 0.95687 1.00522 0.97277 1.21497 0.95227 1.01281
0.97677 1.21946 1.01612 0.98916 0.94569 1.20743 0.92903 0.81549
0.98752 0.89472 1.45202 1.17031 1.09868 1.67643 1.15875 0.81782
0.82979 0.78879 1.90890 1.57269 1.45938 1.53751 1.44764 1.18904
1.07643 1.67078 1.20782 0.84395 0.94909 1.00116 1.19680 0.84013
0.88778 0.85041 1.90533 1.45539 1.60789 1.49525 1.42117 1.14878
1.09156 1.55315 1.19438 1.03381 0.81347 1.39659 0.86113 1.25062
0.97485 0.95955 0.97405 1.69614 1.25463 1.10817 1.45536 0.86670
0.82032 0.80559 0.80238 1.19393 1.20008 1.19185 1.21910 0.94129
1.01739 0.98187 0.92710 0.92658 0.92610 0.92075 0.91986 0.91789
0.92161 0.91359 0.91212 0.77038 0.75575 0.89964 0.89955 0.79229
0.91399 0.91209 0.90421
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16
2 C -0.09 -0.66 2.55 -90.62 -0.23 -0.89 16
3 H 0.07 0.52 6.50 -51.93 -0.34 0.18 16
4 C -0.11 -0.80 5.20 -26.73 -0.14 -0.94 16
5 C -0.12 -1.03 5.77 -26.73 -0.15 -1.18 16
6 C -0.13 -1.27 5.60 -26.74 -0.15 -1.42 16
7 C 0.17 1.66 2.78 -67.91 -0.19 1.47 16
8 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16
9 N -0.74 -8.55 4.24 -58.65 -0.25 -8.80 16
10 C 0.71 11.00 8.53 -86.92 -0.74 10.26 16
11 O -0.60 -11.22 16.01 5.29 0.08 -11.14 16
12 N -0.73 -11.77 5.53 -66.42 -0.37 -12.14 16
13 C 0.13 2.24 6.15 -5.20 -0.03 2.21 16
14 C 0.44 9.71 7.85 -10.99 -0.09 9.62 16
15 O -0.58 -14.66 15.24 5.54 0.08 -14.58 16
16 N -0.58 -13.49 5.09 -10.96 -0.06 -13.55 16
17 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16
18 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16
19 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16
20 N -0.88 -25.08 13.96 55.50 0.77 -24.30 16
21 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16
22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16
23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
24 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16
25 C -0.12 -0.90 4.89 -26.71 -0.13 -1.03 16
26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
29 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16
30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16
32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.39 3.87 6.88 -40.82 -0.28 3.59 16
36 H 0.41 6.46 7.45 -40.82 -0.30 6.16 16
37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16
38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
39 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16
40 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16
41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
LS Contribution 337.90 15.07 5.09 5.09
Total: -1.00 -32.22 337.90 -7.69 -39.91
By element:
Atomic # 1 Polarization: 21.77 SS G_CDS: -6.58 Total: 15.19 kcal
Atomic # 6 Polarization: 11.69 SS G_CDS: -1.76 Total: 9.93 kcal
Atomic # 7 Polarization: -58.89 SS G_CDS: 0.10 Total: -58.79 kcal
Atomic # 8 Polarization: -25.88 SS G_CDS: 0.17 Total: -25.71 kcal
Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -32.22 -7.69 -39.91 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344313756.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.289 kcal
(2) G-P(sol) polarization free energy of solvation -32.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.512 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds