Wall clock time and date at job start Tue Mar 31 2020 02:44:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.47121 * 2 1
4 4 C 1.52998 * 109.47024 * 120.00280 * 2 1 3
5 5 C 1.53002 * 109.46851 * 180.02562 * 4 2 1
6 6 C 1.52996 * 109.46865 * 299.99472 * 5 4 2
7 7 C 1.52995 * 109.47136 * 60.00270 * 6 5 4
8 8 H 1.09005 * 109.47189 * 179.97438 * 7 6 5
9 9 N 1.46506 * 109.47182 * 60.00005 * 7 6 5
10 10 C 1.34773 * 119.99969 * 84.72073 * 9 7 6
11 11 O 1.21586 * 120.00012 * 0.02562 * 10 9 7
12 12 N 1.34774 * 119.99940 * 180.02562 * 10 9 7
13 13 C 1.46498 * 120.00211 * 180.02562 * 12 10 9
14 14 C 1.50698 * 109.47426 * 179.97438 * 13 12 10
15 15 O 1.21297 * 119.99724 * 0.02562 * 14 13 12
16 16 N 1.34778 * 120.00117 * 179.97438 * 14 13 12
17 17 C 1.37102 * 120.00012 * 180.02562 * 16 14 13
18 18 H 1.08005 * 119.99836 * 359.97438 * 17 16 14
19 19 C 1.38945 * 120.00285 * 180.02562 * 17 16 14
20 20 N 1.31409 * 120.00541 * 179.97438 * 19 17 16
21 21 Si 1.86808 * 119.99658 * 359.97438 * 19 17 16
22 22 H 1.48497 * 109.46875 * 90.00102 * 21 19 17
23 23 H 1.48503 * 109.46641 * 209.99976 * 21 19 17
24 24 H 1.48494 * 109.47249 * 329.99944 * 21 19 17
25 25 C 1.52996 * 109.47046 * 239.99969 * 2 1 3
26 26 H 1.09002 * 109.47121 * 180.02562 * 1 2 3
27 27 H 1.09005 * 109.47352 * 299.99779 * 1 2 3
28 28 H 1.08996 * 109.47182 * 59.99953 * 1 2 3
29 29 H 1.09008 * 109.46760 * 299.99700 * 4 2 1
30 30 H 1.08992 * 109.47402 * 59.99883 * 4 2 1
31 31 H 1.08992 * 109.47480 * 59.99603 * 5 4 2
32 32 H 1.09005 * 109.47050 * 179.97438 * 5 4 2
33 33 H 1.09002 * 109.47614 * 299.99990 * 6 5 4
34 34 H 1.09007 * 109.47191 * 180.02562 * 6 5 4
35 35 H 0.97005 * 119.99811 * 265.00126 * 9 7 6
36 36 H 0.97004 * 120.00041 * 359.97438 * 12 10 9
37 37 H 1.08998 * 109.47182 * 299.99924 * 13 12 10
38 38 H 1.09001 * 109.47115 * 59.99869 * 13 12 10
39 39 H 0.96995 * 120.00110 * 359.97438 * 16 14 13
40 40 H 0.96993 * 120.00299 * 179.97438 * 20 19 17
41 41 H 1.09005 * 109.47196 * 59.99876 * 25 2 1
42 42 H 1.09002 * 109.47186 * 299.99991 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5700 -0.7207 1.2495
6 6 4.0804 -1.4416 0.0003
7 6 3.5704 -0.7204 -1.2489
8 1 3.9344 -1.2338 -2.1390
9 7 4.0583 0.6610 -1.2487
10 6 5.2825 0.9434 -1.7366
11 8 5.9818 0.0517 -2.1773
12 7 5.7315 2.2141 -1.7359
13 6 7.0620 2.5212 -2.2667
14 6 7.3196 4.0015 -2.1512
15 8 6.4750 4.7285 -1.6721
16 7 8.4888 4.5175 -2.5793
17 6 8.7233 5.8642 -2.4738
18 1 7.9710 6.5116 -2.0479
19 6 9.9284 6.3962 -2.9156
20 7 10.1531 7.6871 -2.8149
21 14 11.2294 5.2765 -3.6527
22 1 11.0217 5.1752 -5.1196
23 1 12.5771 5.8379 -3.3812
24 1 11.1235 3.9265 -3.0434
25 6 2.0400 -0.7212 -1.2492
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8899
29 1 1.6766 -0.2074 2.1392
30 1 1.6767 -1.7489 1.2492
31 1 3.9330 0.3070 1.2497
32 1 3.9334 -1.2342 2.1397
33 1 3.7175 -2.4695 0.0000
34 1 5.1705 -1.4417 0.0006
35 1 3.5018 1.3718 -0.8936
36 1 5.1735 2.9255 -1.3846
37 1 7.8149 1.9756 -1.6979
38 1 7.1125 2.2246 -3.3144
39 1 9.1646 3.9360 -2.9614
40 1 10.9945 8.0584 -3.1230
41 1 1.6766 -0.2074 -2.1392
42 1 1.6766 -1.7489 -1.2492
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344313756.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:51
Heat of formation + Delta-G solvation = -111.848015 kcal
Electronic energy + Delta-G solvation = -22365.764318 eV
Core-core repulsion = 18957.821104 eV
Total energy + Delta-G solvation = -3407.943214 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.49420 -40.40541 -39.31353 -36.28328 -35.27767 -35.02584 -33.83363 -33.01911
-30.98693 -28.97134 -27.24616 -26.17868 -23.45748 -22.49937 -22.05090 -21.46592
-20.67369 -19.99828 -19.49615 -17.46254 -17.33645 -16.93903 -16.67808 -16.36370
-15.79441 -15.75687 -15.64222 -15.10397 -14.92315 -14.71924 -14.32044 -14.22180
-13.98185 -13.70122 -13.29862 -13.09290 -13.05162 -12.95898 -12.67110 -12.44730
-12.36967 -12.00253 -11.85087 -11.58100 -11.41696 -11.35815 -11.08005 -10.94197
-10.65205 -10.36508 -10.30260 -9.76568 -8.45685 -6.07669 1.31368 1.34209
1.43872 1.64185 1.78959 2.15766 2.20529 2.80285 3.10706 3.33277
3.77060 3.80894 3.85156 4.00179 4.19746 4.26953 4.39730 4.44857
4.50840 4.54096 4.57795 4.73166 4.81222 4.87448 5.00943 5.04776
5.11860 5.17417 5.29562 5.31392 5.39333 5.43227 5.43879 5.49270
5.57374 5.68084 5.88146 5.99097 6.48959 6.78041 7.04638 7.28713
7.56833 7.78233 8.70817
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.034312 B = 0.003017 C = 0.002901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 815.834607 B = 9279.705877 C = 9650.632015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.094 4.094
3 H 0.062 0.938
4 C -0.108 4.108
5 C -0.117 4.117
6 C -0.128 4.128
7 C 0.162 3.838
8 H 0.071 0.929
9 N -0.726 5.726
10 C 0.705 3.295
11 O -0.630 6.630
12 N -0.729 5.729
13 C 0.139 3.861
14 C 0.446 3.554
15 O -0.614 6.614
16 N -0.578 5.578
17 C -0.331 4.331
18 H 0.063 0.937
19 C -0.008 4.008
20 N -0.926 5.926
21 Si 0.959 3.041
22 H -0.256 1.256
23 H -0.273 1.273
24 H -0.233 1.233
25 C -0.113 4.113
26 H 0.062 0.938
27 H 0.056 0.944
28 H 0.055 0.945
29 H 0.065 0.935
30 H 0.073 0.927
31 H 0.048 0.952
32 H 0.063 0.937
33 H 0.086 0.914
34 H 0.040 0.960
35 H 0.405 0.595
36 H 0.408 0.592
37 H 0.099 0.901
38 H 0.101 0.899
39 H 0.392 0.608
40 H 0.281 0.719
41 H 0.071 0.929
42 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.497 -21.161 4.538 26.618
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.113 4.113
3 H 0.081 0.919
4 C -0.146 4.146
5 C -0.155 4.155
6 C -0.166 4.166
7 C 0.058 3.942
8 H 0.089 0.911
9 N -0.382 5.382
10 C 0.405 3.595
11 O -0.511 6.511
12 N -0.387 5.387
13 C 0.010 3.990
14 C 0.234 3.766
15 O -0.500 6.500
16 N -0.218 5.218
17 C -0.460 4.460
18 H 0.082 0.918
19 C -0.208 4.208
20 N -0.566 5.566
21 Si 0.779 3.221
22 H -0.181 1.181
23 H -0.198 1.198
24 H -0.156 1.156
25 C -0.151 4.151
26 H 0.081 0.919
27 H 0.075 0.925
28 H 0.074 0.926
29 H 0.084 0.916
30 H 0.092 0.908
31 H 0.067 0.933
32 H 0.082 0.918
33 H 0.105 0.895
34 H 0.059 0.941
35 H 0.241 0.759
36 H 0.246 0.754
37 H 0.117 0.883
38 H 0.119 0.881
39 H 0.228 0.772
40 H 0.091 0.909
41 H 0.089 0.911
42 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -15.298 -21.293 4.421 26.589
hybrid contribution 0.703 0.911 -0.083 1.153
sum -14.595 -20.382 4.338 25.442
Atomic orbital electron populations
1.21794 0.94072 1.02367 1.01924 1.21140 0.96333 0.99182 0.94605
0.91924 1.21577 0.94189 1.01316 0.97498 1.21472 0.96545 1.00178
0.97271 1.21899 0.99797 1.00127 0.94812 1.20908 0.94750 0.80303
0.98278 0.91128 1.45180 1.15692 1.11048 1.66283 1.15966 0.82571
0.82183 0.78816 1.90868 1.58419 1.46589 1.55256 1.44737 1.18516
1.08062 1.67350 1.20667 0.85657 0.90948 1.01683 1.20510 0.82842
0.90557 0.82736 1.90521 1.46597 1.62465 1.50433 1.41919 1.15948
1.07742 1.56188 1.19032 1.03020 0.82899 1.41067 0.91848 1.26060
0.99807 0.97721 0.97180 1.69775 1.26651 1.13401 1.46784 0.85446
0.77583 0.79393 0.79712 1.18062 1.19821 1.15625 1.21870 0.91731
1.02940 0.98529 0.91873 0.92478 0.92602 0.91616 0.90827 0.93327
0.91784 0.89511 0.94081 0.75873 0.75437 0.88277 0.88102 0.77222
0.90910 0.91076 0.88713
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.40 9.19 71.98 0.66 -0.74 16
2 C -0.09 -1.10 2.55 -10.80 -0.03 -1.13 16
3 H 0.06 0.82 6.50 -2.39 -0.02 0.81 16
4 C -0.11 -1.28 5.20 30.59 0.16 -1.12 16
5 C -0.12 -1.85 5.77 30.59 0.18 -1.67 16
6 C -0.13 -2.30 5.60 30.59 0.17 -2.13 16
7 C 0.16 3.04 2.78 45.00 0.13 3.17 16
8 H 0.07 1.59 7.58 -2.38 -0.02 1.58 16
9 N -0.73 -16.05 4.24 -457.74 -1.94 -17.99 16
10 C 0.70 21.31 8.53 179.06 1.53 22.84 16
11 O -0.63 -22.96 16.01 -3.99 -0.06 -23.02 16
12 N -0.73 -22.93 5.53 -482.31 -2.67 -25.59 16
13 C 0.14 4.68 6.15 85.63 0.53 5.21 16
14 C 0.45 19.62 7.85 87.66 0.69 20.31 16
15 O -0.61 -31.78 15.24 -3.08 -0.05 -31.83 16
16 N -0.58 -26.77 5.09 -306.98 -1.56 -28.33 16
17 C -0.33 -18.88 10.16 84.04 0.85 -18.03 16
18 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16
19 C -0.01 -0.42 5.50 84.93 0.47 0.05 16
20 N -0.93 -54.60 13.96 21.66 0.30 -54.30 16
21 Si 0.96 38.31 27.74 68.60 1.90 40.21 16
22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16
23 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16
24 H -0.23 -7.97 6.52 99.48 0.65 -7.33 16
25 C -0.11 -1.42 4.89 30.61 0.15 -1.27 16
26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16
28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16
30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
31 H 0.05 0.91 7.60 -2.39 -0.02 0.89 16
32 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16
33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
34 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16
35 H 0.40 7.50 6.88 -92.70 -0.64 6.86 16
36 H 0.41 12.79 7.45 -92.71 -0.69 12.10 16
37 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16
38 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16
39 H 0.39 15.28 5.76 -92.71 -0.53 14.74 16
40 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16
41 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16
42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
Total: -1.00 -72.74 337.90 0.53 -72.21
By element:
Atomic # 1 Polarization: 44.03 SS G_CDS: -0.88 Total: 43.15 kcal
Atomic # 6 Polarization: 20.00 SS G_CDS: 5.48 Total: 25.48 kcal
Atomic # 7 Polarization: -120.35 SS G_CDS: -5.87 Total: -126.22 kcal
Atomic # 8 Polarization: -54.74 SS G_CDS: -0.11 Total: -54.85 kcal
Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.21 kcal
Total: -72.74 0.53 -72.21 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344313756.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.635 kcal
(2) G-P(sol) polarization free energy of solvation -72.739 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds