Wall clock time and date at job start Tue Mar 31 2020 02:14:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 109.47264 * 2 1
4 4 H 1.08994 * 110.53980 * 52.38132 * 3 2 1
5 5 C 1.54886 * 110.48283 * 289.76842 * 3 2 1
6 6 C 1.54883 * 102.75082 * 203.37705 * 5 3 2
7 7 C 1.54272 * 104.19164 * 37.94787 * 6 5 3
8 8 C 1.53874 * 106.59927 * 336.38594 * 7 6 5
9 9 H 1.08997 * 110.07529 * 240.69884 * 8 7 6
10 10 N 1.46500 * 110.03241 * 119.28692 * 8 7 6
11 11 C 1.34772 * 120.00126 * 87.83239 * 10 8 7
12 12 O 1.21592 * 119.99810 * 0.02562 * 11 10 8
13 13 N 1.34780 * 120.00308 * 180.02562 * 11 10 8
14 14 C 1.46491 * 120.00091 * 179.97438 * 13 11 10
15 15 C 1.50702 * 109.46957 * 179.97438 * 14 13 11
16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13
17 17 N 1.34777 * 119.99928 * 179.72354 * 15 14 13
18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14
19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15
20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15
21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17
23 23 H 1.48498 * 109.46867 * 90.00263 * 22 20 18
24 24 H 1.48501 * 109.47216 * 210.00120 * 22 20 18
25 25 H 1.48499 * 109.47135 * 330.00462 * 22 20 18
26 26 H 1.08998 * 109.47407 * 300.00433 * 1 2 3
27 27 H 1.09008 * 109.46822 * 60.00286 * 1 2 3
28 28 H 1.08998 * 109.47356 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.47407 * 239.99567 * 2 1 3
30 30 H 1.09008 * 109.46822 * 119.99713 * 2 1 3
31 31 H 1.08997 * 110.75989 * 321.69715 * 5 3 2
32 32 H 1.09004 * 110.75405 * 84.88280 * 5 3 2
33 33 H 1.09004 * 110.49064 * 156.62206 * 6 5 3
34 34 H 1.08997 * 110.48813 * 279.26984 * 6 5 3
35 35 H 1.09000 * 110.02678 * 217.10428 * 7 6 5
36 36 H 1.08998 * 110.03201 * 95.67620 * 7 6 5
37 37 H 0.97005 * 120.00111 * 267.83746 * 10 8 7
38 38 H 0.97003 * 119.99349 * 0.02562 * 13 11 10
39 39 H 1.09004 * 109.47166 * 60.00164 * 14 13 11
40 40 H 1.09000 * 109.47767 * 300.00232 * 14 13 11
41 41 H 0.97000 * 120.00317 * 0.28382 * 17 15 14
42 42 H 0.96996 * 120.00330 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5801 2.0107 0.8085
5 6 1.7581 2.1171 -1.3654
6 6 2.8154 3.2479 -1.4129
7 6 4.0703 2.6195 -0.7723
8 6 3.5773 1.4716 0.1260
9 1 3.8635 1.6573 1.1612
10 7 4.1424 0.1993 -0.3300
11 6 5.3414 -0.2092 0.1304
12 8 5.9538 0.4782 0.9247
13 7 5.8616 -1.3795 -0.2896
14 6 7.1650 -1.8231 0.2105
15 6 7.5150 -3.1517 -0.4088
16 8 6.7509 -3.6762 -1.1913
17 7 8.6797 -3.7543 -0.0978
18 6 9.0007 -4.9602 -0.6655
19 1 8.3203 -5.4271 -1.3623
20 6 10.2012 -5.5817 -0.3446
21 7 11.0289 -5.0138 0.5036
22 14 10.6381 -7.2252 -1.1176
23 1 11.3818 -6.9952 -2.3822
24 1 11.4860 -8.0037 -0.1793
25 1 9.3940 -7.9830 -1.4057
26 1 -0.3634 0.5139 0.8899
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3634 -1.0276 0.0005
29 1 1.8934 -0.5139 -0.8899
30 1 1.8933 -0.5138 0.8901
31 1 1.9092 1.4123 -2.1831
32 1 0.7484 2.5271 -1.3925
33 1 3.0179 3.5379 -2.4439
34 1 2.4807 4.1077 -0.8326
35 1 4.5958 3.3632 -0.1733
36 1 4.7300 2.2300 -1.5477
37 1 3.6536 -0.3492 -0.9635
38 1 5.3730 -1.9276 -0.9235
39 1 7.1218 -1.9281 1.2946
40 1 7.9250 -1.0875 -0.0532
41 1 9.2910 -3.3348 0.5277
42 1 11.8668 -5.4478 0.7280
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000345264935.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:14:26
Heat of formation + Delta-G solvation = -88.448609 kcal
Electronic energy + Delta-G solvation = -22212.506657 eV
Core-core repulsion = 18805.578116 eV
Total energy + Delta-G solvation = -3406.928540 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.28154 -38.73736 -37.88557 -34.38935 -33.64797 -33.50997 -33.28021 -31.35434
-28.43406 -27.84913 -26.75692 -24.39243 -23.06284 -21.08848 -20.68688 -19.65817
-19.32233 -18.48499 -17.95132 -16.27861 -15.87742 -15.42476 -15.33511 -15.00388
-14.70690 -14.53381 -14.32170 -14.02712 -13.75071 -13.43952 -13.29646 -13.10576
-12.32984 -12.15034 -12.11018 -11.81606 -11.62065 -11.49719 -11.27285 -11.11702
-11.06084 -10.80248 -10.74906 -10.58444 -10.45131 -10.30809 -9.95417 -9.62180
-9.07386 -8.60498 -8.55062 -8.08388 -6.50002 -3.92030 2.89571 3.12579
3.22835 3.28374 3.45499 3.77265 4.10219 4.22892 4.40018 4.46735
4.57370 4.92185 4.94223 5.00868 5.07396 5.18796 5.26247 5.32091
5.38613 5.44955 5.47075 5.60916 5.68414 5.74820 5.83127 5.87315
5.92669 6.01356 6.03659 6.05567 6.10297 6.10950 6.20076 6.67883
6.80500 7.17692 7.47294 7.94085 8.30144 8.47015 8.86690 9.06194
9.41374 9.89338 10.66992
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.032387 B = 0.002879 C = 0.002757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.341447 B = 9723.266540 C =10155.246485
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.117 4.117
3 C -0.099 4.099
4 H 0.086 0.914
5 C -0.120 4.120
6 C -0.124 4.124
7 C -0.136 4.136
8 C 0.164 3.836
9 H 0.090 0.910
10 N -0.742 5.742
11 C 0.703 3.297
12 O -0.599 6.599
13 N -0.726 5.726
14 C 0.129 3.871
15 C 0.429 3.571
16 O -0.598 6.598
17 N -0.550 5.550
18 C -0.305 4.305
19 H 0.105 0.895
20 C 0.025 3.975
21 N -0.895 5.895
22 Si 0.933 3.067
23 H -0.277 1.277
24 H -0.283 1.283
25 H -0.269 1.269
26 H 0.053 0.947
27 H 0.054 0.946
28 H 0.053 0.947
29 H 0.062 0.938
30 H 0.067 0.933
31 H 0.068 0.932
32 H 0.066 0.934
33 H 0.064 0.936
34 H 0.065 0.935
35 H 0.069 0.931
36 H 0.070 0.930
37 H 0.395 0.605
38 H 0.406 0.594
39 H 0.081 0.919
40 H 0.081 0.919
41 H 0.396 0.604
42 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.236 13.537 -1.377 21.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.154 4.154
3 C -0.118 4.118
4 H 0.104 0.896
5 C -0.157 4.157
6 C -0.162 4.162
7 C -0.175 4.175
8 C 0.059 3.941
9 H 0.108 0.892
10 N -0.399 5.399
11 C 0.403 3.597
12 O -0.478 6.478
13 N -0.383 5.383
14 C 0.000 4.000
15 C 0.215 3.785
16 O -0.485 6.485
17 N -0.185 5.185
18 C -0.434 4.434
19 H 0.123 0.877
20 C -0.177 4.177
21 N -0.535 5.535
22 Si 0.760 3.240
23 H -0.203 1.203
24 H -0.208 1.208
25 H -0.193 1.193
26 H 0.072 0.928
27 H 0.073 0.927
28 H 0.073 0.927
29 H 0.081 0.919
30 H 0.086 0.914
31 H 0.086 0.914
32 H 0.085 0.915
33 H 0.083 0.917
34 H 0.084 0.916
35 H 0.088 0.912
36 H 0.089 0.911
37 H 0.231 0.769
38 H 0.243 0.757
39 H 0.099 0.901
40 H 0.099 0.901
41 H 0.230 0.770
42 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -16.941 13.715 -1.077 21.823
hybrid contribution 0.353 -1.062 -0.537 1.241
sum -16.587 12.653 -1.614 20.925
Atomic orbital electron populations
1.21780 0.95709 1.01671 1.01701 1.21505 0.95800 0.95785 1.02356
1.22343 0.94163 0.96819 0.98524 0.89571 1.22599 0.98776 0.97580
0.96776 1.22355 0.95288 0.97867 1.00713 1.22640 0.97729 0.97752
0.99419 1.21395 0.91583 0.82186 0.98977 0.89233 1.45302 1.20332
1.23947 1.50273 1.15907 0.81258 0.81415 0.81110 1.90895 1.61661
1.56636 1.38592 1.44781 1.22003 1.21621 1.49892 1.20765 0.84638
0.95507 0.99041 1.19784 0.84241 0.87520 0.86975 1.90487 1.51199
1.67185 1.39610 1.41791 1.16610 1.19857 1.40205 1.19724 1.03539
0.96121 1.24029 0.87711 1.25320 0.95672 1.00040 0.96701 1.69615
1.10913 1.39748 1.33254 0.85817 0.78655 0.80986 0.78589 1.20285
1.20805 1.19327 0.92827 0.92686 0.92743 0.91899 0.91423 0.91366
0.91481 0.91701 0.91631 0.91226 0.91125 0.76893 0.75716 0.90092
0.90089 0.77017 0.91602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.03 9.79 37.16 0.36 -0.67 16
2 C -0.12 -0.93 4.47 -26.73 -0.12 -1.04 16
3 C -0.10 -0.79 2.81 -88.96 -0.25 -1.04 16
4 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
5 C -0.12 -0.85 5.67 -24.74 -0.14 -0.99 16
6 C -0.12 -0.95 6.83 -25.07 -0.17 -1.13 16
7 C -0.14 -1.38 6.59 -25.61 -0.17 -1.55 16
8 C 0.16 1.76 3.12 -66.81 -0.21 1.55 16
9 H 0.09 1.12 7.56 -51.93 -0.39 0.73 16
10 N -0.74 -9.01 4.35 -57.58 -0.25 -9.26 16
11 C 0.70 11.55 8.56 -86.92 -0.74 10.81 16
12 O -0.60 -11.83 16.00 5.28 0.08 -11.75 16
13 N -0.73 -12.39 5.53 -66.42 -0.37 -12.76 16
14 C 0.13 2.44 6.15 -5.20 -0.03 2.41 16
15 C 0.43 9.94 7.85 -10.98 -0.09 9.85 16
16 O -0.60 -15.37 15.24 5.55 0.08 -15.28 16
17 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16
18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16
19 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16
20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16
21 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16
22 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16
23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16
26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
27 H 0.05 0.34 7.55 -51.92 -0.39 -0.05 16
28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.06 0.49 6.41 -51.93 -0.33 0.16 16
30 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16
31 H 0.07 0.50 7.97 -51.93 -0.41 0.08 16
32 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16
33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
36 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16
37 H 0.40 4.06 6.57 -40.82 -0.27 3.79 16
38 H 0.41 6.73 7.45 -40.82 -0.30 6.43 16
39 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16
40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16
41 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16
42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
LS Contribution 343.49 15.07 5.18 5.18
Total: -1.00 -31.22 343.49 -8.00 -39.22
By element:
Atomic # 1 Polarization: 22.46 SS G_CDS: -6.57 Total: 15.89 kcal
Atomic # 6 Polarization: 12.11 SS G_CDS: -1.80 Total: 10.31 kcal
Atomic # 7 Polarization: -59.20 SS G_CDS: 0.05 Total: -59.15 kcal
Atomic # 8 Polarization: -27.20 SS G_CDS: 0.17 Total: -27.03 kcal
Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -31.22 -8.00 -39.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345264935.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.233 kcal
(2) G-P(sol) polarization free energy of solvation -31.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.451 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds