Wall clock time and date at job start Tue Mar 31 2020 02:14:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 109.47264 * 2 1
4 4 H 1.08994 * 110.53980 * 52.38132 * 3 2 1
5 5 C 1.54886 * 110.48283 * 289.76842 * 3 2 1
6 6 C 1.54883 * 102.75082 * 203.37705 * 5 3 2
7 7 C 1.54272 * 104.19164 * 37.94787 * 6 5 3
8 8 C 1.53874 * 106.59927 * 336.38594 * 7 6 5
9 9 H 1.08997 * 110.07529 * 240.69884 * 8 7 6
10 10 N 1.46500 * 110.03241 * 119.28692 * 8 7 6
11 11 C 1.34772 * 120.00126 * 87.83239 * 10 8 7
12 12 O 1.21592 * 119.99810 * 0.02562 * 11 10 8
13 13 N 1.34780 * 120.00308 * 180.02562 * 11 10 8
14 14 C 1.46491 * 120.00091 * 179.97438 * 13 11 10
15 15 C 1.50702 * 109.46957 * 179.97438 * 14 13 11
16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13
17 17 N 1.34777 * 119.99928 * 179.72354 * 15 14 13
18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14
19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15
20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15
21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17
23 23 H 1.48498 * 109.46867 * 90.00263 * 22 20 18
24 24 H 1.48501 * 109.47216 * 210.00120 * 22 20 18
25 25 H 1.48499 * 109.47135 * 330.00462 * 22 20 18
26 26 H 1.08998 * 109.47407 * 300.00433 * 1 2 3
27 27 H 1.09008 * 109.46822 * 60.00286 * 1 2 3
28 28 H 1.08998 * 109.47356 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.47407 * 239.99567 * 2 1 3
30 30 H 1.09008 * 109.46822 * 119.99713 * 2 1 3
31 31 H 1.08997 * 110.75989 * 321.69715 * 5 3 2
32 32 H 1.09004 * 110.75405 * 84.88280 * 5 3 2
33 33 H 1.09004 * 110.49064 * 156.62206 * 6 5 3
34 34 H 1.08997 * 110.48813 * 279.26984 * 6 5 3
35 35 H 1.09000 * 110.02678 * 217.10428 * 7 6 5
36 36 H 1.08998 * 110.03201 * 95.67620 * 7 6 5
37 37 H 0.97005 * 120.00111 * 267.83746 * 10 8 7
38 38 H 0.97003 * 119.99349 * 0.02562 * 13 11 10
39 39 H 1.09004 * 109.47166 * 60.00164 * 14 13 11
40 40 H 1.09000 * 109.47767 * 300.00232 * 14 13 11
41 41 H 0.97000 * 120.00317 * 0.28382 * 17 15 14
42 42 H 0.96996 * 120.00330 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5801 2.0107 0.8085
5 6 1.7581 2.1171 -1.3654
6 6 2.8154 3.2479 -1.4129
7 6 4.0703 2.6195 -0.7723
8 6 3.5773 1.4716 0.1260
9 1 3.8635 1.6573 1.1612
10 7 4.1424 0.1993 -0.3300
11 6 5.3414 -0.2092 0.1304
12 8 5.9538 0.4782 0.9247
13 7 5.8616 -1.3795 -0.2896
14 6 7.1650 -1.8231 0.2105
15 6 7.5150 -3.1517 -0.4088
16 8 6.7509 -3.6762 -1.1913
17 7 8.6797 -3.7543 -0.0978
18 6 9.0007 -4.9602 -0.6655
19 1 8.3203 -5.4271 -1.3623
20 6 10.2012 -5.5817 -0.3446
21 7 11.0289 -5.0138 0.5036
22 14 10.6381 -7.2252 -1.1176
23 1 11.3818 -6.9952 -2.3822
24 1 11.4860 -8.0037 -0.1793
25 1 9.3940 -7.9830 -1.4057
26 1 -0.3634 0.5139 0.8899
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3634 -1.0276 0.0005
29 1 1.8934 -0.5139 -0.8899
30 1 1.8933 -0.5138 0.8901
31 1 1.9092 1.4123 -2.1831
32 1 0.7484 2.5271 -1.3925
33 1 3.0179 3.5379 -2.4439
34 1 2.4807 4.1077 -0.8326
35 1 4.5958 3.3632 -0.1733
36 1 4.7300 2.2300 -1.5477
37 1 3.6536 -0.3492 -0.9635
38 1 5.3730 -1.9276 -0.9235
39 1 7.1218 -1.9281 1.2946
40 1 7.9250 -1.0875 -0.0532
41 1 9.2910 -3.3348 0.5277
42 1 11.8668 -5.4478 0.7280
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000345264935.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:14:25
Heat of formation + Delta-G solvation = -110.045044 kcal
Electronic energy + Delta-G solvation = -22213.443148 eV
Core-core repulsion = 18805.578116 eV
Total energy + Delta-G solvation = -3407.865032 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.45815 -40.26319 -39.22221 -36.23435 -35.25547 -34.52978 -34.03944 -33.35918
-29.70393 -28.51012 -28.03690 -26.24082 -23.70985 -22.34818 -21.41543 -21.34978
-20.31882 -20.07364 -19.66262 -17.47150 -17.40856 -16.84379 -16.66535 -16.21285
-16.11608 -15.69459 -15.65289 -15.31689 -15.07232 -14.90026 -13.99338 -13.93286
-13.89646 -13.58805 -13.54212 -12.97706 -12.90986 -12.64530 -12.45615 -12.23835
-12.12483 -11.92054 -11.76856 -11.56879 -11.49482 -11.41128 -11.35463 -11.24441
-10.55533 -10.38408 -10.10080 -9.78322 -8.50891 -6.01254 1.36580 1.42573
1.54698 1.65059 1.89911 2.14042 2.28971 3.05376 3.16364 3.33795
3.54619 3.70193 3.86883 4.21170 4.27349 4.35741 4.41782 4.44058
4.46131 4.57242 4.61670 4.67664 4.79524 4.81423 4.97641 5.04817
5.10493 5.21110 5.26396 5.29489 5.32271 5.37980 5.39394 5.44963
5.55163 5.67436 5.91982 5.99127 6.48179 7.03492 7.05096 7.43150
7.56558 7.94446 8.66158
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.032387 B = 0.002879 C = 0.002757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.341447 B = 9723.266540 C =10155.246485
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.117 4.117
3 C -0.090 4.090
4 H 0.097 0.903
5 C -0.114 4.114
6 C -0.118 4.118
7 C -0.136 4.136
8 C 0.158 3.842
9 H 0.068 0.932
10 N -0.723 5.723
11 C 0.703 3.297
12 O -0.633 6.633
13 N -0.725 5.725
14 C 0.142 3.858
15 C 0.434 3.566
16 O -0.623 6.623
17 N -0.559 5.559
18 C -0.337 4.337
19 H 0.087 0.913
20 C -0.011 4.011
21 N -0.917 5.917
22 Si 0.997 3.003
23 H -0.270 1.270
24 H -0.272 1.272
25 H -0.269 1.269
26 H 0.057 0.943
27 H 0.065 0.935
28 H 0.052 0.948
29 H 0.064 0.936
30 H 0.051 0.949
31 H 0.068 0.932
32 H 0.086 0.914
33 H 0.070 0.930
34 H 0.077 0.923
35 H 0.061 0.939
36 H 0.054 0.946
37 H 0.407 0.593
38 H 0.409 0.591
39 H 0.090 0.910
40 H 0.090 0.910
41 H 0.399 0.601
42 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.503 13.897 -1.978 23.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.155 4.155
3 C -0.109 4.109
4 H 0.115 0.885
5 C -0.151 4.151
6 C -0.156 4.156
7 C -0.175 4.175
8 C 0.053 3.947
9 H 0.087 0.913
10 N -0.380 5.380
11 C 0.403 3.597
12 O -0.515 6.515
13 N -0.383 5.383
14 C 0.014 3.986
15 C 0.221 3.779
16 O -0.511 6.511
17 N -0.195 5.195
18 C -0.466 4.466
19 H 0.105 0.895
20 C -0.212 4.212
21 N -0.557 5.557
22 Si 0.820 3.180
23 H -0.195 1.195
24 H -0.197 1.197
25 H -0.194 1.194
26 H 0.076 0.924
27 H 0.084 0.916
28 H 0.071 0.929
29 H 0.082 0.918
30 H 0.069 0.931
31 H 0.087 0.913
32 H 0.104 0.896
33 H 0.089 0.911
34 H 0.096 0.904
35 H 0.080 0.920
36 H 0.072 0.928
37 H 0.245 0.755
38 H 0.247 0.753
39 H 0.108 0.892
40 H 0.108 0.892
41 H 0.233 0.767
42 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -18.247 14.098 -1.689 23.121
hybrid contribution 0.707 -1.113 -0.334 1.360
sum -17.540 12.985 -2.022 21.917
Atomic orbital electron populations
1.21751 0.94484 1.01857 1.02429 1.21494 0.96861 0.95518 1.01606
1.22309 0.91630 0.97198 0.99743 0.88500 1.22590 0.99526 0.97184
0.95840 1.22333 0.93973 0.98302 1.00960 1.22605 0.98767 0.97389
0.98785 1.21583 0.93663 0.81519 0.97935 0.91340 1.45230 1.18799
1.24413 1.49587 1.16015 0.82067 0.80829 0.80825 1.90871 1.62898
1.57486 1.40209 1.44697 1.21457 1.22037 1.50101 1.20562 0.85849
0.93110 0.99119 1.20405 0.83184 0.88329 0.85961 1.90464 1.51792
1.68270 1.40624 1.41838 1.17348 1.19718 1.40589 1.19744 1.04246
0.97527 1.25126 0.89536 1.26138 0.95031 1.03173 0.96810 1.69683
1.11235 1.41038 1.33743 0.84863 0.78315 0.76753 0.78026 1.19546
1.19655 1.19382 0.92423 0.91610 0.92895 0.91786 0.93067 0.91330
0.89581 0.91090 0.90446 0.91995 0.92761 0.75547 0.75340 0.89192
0.89228 0.76719 0.91063
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.70 9.79 71.98 0.70 -0.99 16
2 C -0.12 -1.67 4.47 30.60 0.14 -1.54 16
3 C -0.09 -1.26 2.81 -9.72 -0.03 -1.29 16
4 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
5 C -0.11 -1.29 5.67 31.88 0.18 -1.11 16
6 C -0.12 -1.55 6.83 31.67 0.22 -1.34 16
7 C -0.14 -2.67 6.59 31.32 0.21 -2.47 16
8 C 0.16 3.29 3.12 45.72 0.14 3.43 16
9 H 0.07 1.74 7.56 -2.39 -0.02 1.72 16
10 N -0.72 -17.24 4.35 -454.35 -1.97 -19.21 16
11 C 0.70 23.00 8.56 179.05 1.53 24.53 16
12 O -0.63 -25.16 16.00 -4.01 -0.06 -25.23 16
13 N -0.73 -24.60 5.53 -482.30 -2.67 -27.27 16
14 C 0.14 5.38 6.15 85.64 0.53 5.90 16
15 C 0.43 20.28 7.85 87.66 0.69 20.97 16
16 O -0.62 -32.34 15.24 -3.07 -0.05 -32.39 16
17 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16
18 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16
19 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16
20 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16
21 N -0.92 -49.05 13.05 21.66 0.28 -48.77 16
22 Si 1.00 41.87 29.55 68.60 2.03 43.89 16
23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16
24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16
25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
27 H 0.06 0.62 7.55 -2.38 -0.02 0.61 16
28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
29 H 0.06 0.89 6.41 -2.39 -0.02 0.87 16
30 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16
31 H 0.07 0.80 7.97 -2.39 -0.02 0.78 16
32 H 0.09 0.72 8.05 -2.38 -0.02 0.70 16
33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
34 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16
35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
36 H 0.05 1.24 7.92 -2.39 -0.02 1.22 16
37 H 0.41 7.95 6.57 -92.70 -0.61 7.34 16
38 H 0.41 13.45 7.45 -92.71 -0.69 12.76 16
39 H 0.09 3.27 8.14 -2.38 -0.02 3.26 16
40 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16
41 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16
42 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16
Total: -1.00 -66.61 343.49 0.54 -66.07
By element:
Atomic # 1 Polarization: 45.75 SS G_CDS: -0.99 Total: 44.76 kcal
Atomic # 6 Polarization: 22.55 SS G_CDS: 5.59 Total: 28.14 kcal
Atomic # 7 Polarization: -119.27 SS G_CDS: -5.98 Total: -125.25 kcal
Atomic # 8 Polarization: -57.51 SS G_CDS: -0.11 Total: -57.62 kcal
Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal
Total: -66.61 0.54 -66.07 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345264935.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.973 kcal
(2) G-P(sol) polarization free energy of solvation -66.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.045 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds