Wall clock time and date at job start Tue Mar 31 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.43291 * 2 1 4 4 C 1.55238 * 110.58012 * 237.41750 * 2 1 3 5 5 C 1.54894 * 102.58338 * 203.33342 * 4 2 1 6 6 C 1.54266 * 104.31305 * 37.93170 * 5 4 2 7 7 H 1.09001 * 110.03084 * 95.60669 * 6 5 4 8 8 C 1.52999 * 110.03121 * 216.98718 * 6 5 4 9 9 N 1.46502 * 109.47011 * 293.54451 * 8 6 5 10 10 C 1.34774 * 119.99687 * 179.97438 * 9 8 6 11 11 O 1.21588 * 120.00570 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00121 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00411 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47202 * 180.02562 * 13 12 10 15 15 O 1.21285 * 119.99857 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99612 * 180.02562 * 14 13 12 17 17 C 1.37106 * 119.99754 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99991 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00019 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99943 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47361 * 59.99730 * 21 19 17 23 23 H 1.48498 * 109.47428 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46785 * 299.99837 * 21 19 17 25 25 C 1.53869 * 106.60031 * 336.32486 * 6 5 4 26 26 H 1.09002 * 109.47015 * 297.45451 * 1 2 3 27 27 H 1.08997 * 109.47536 * 57.46280 * 1 2 3 28 28 H 1.09001 * 109.46911 * 177.46124 * 1 2 3 29 29 H 1.08996 * 110.89448 * 85.04906 * 4 2 1 30 30 H 1.08993 * 110.76342 * 321.56571 * 4 2 1 31 31 H 1.09002 * 110.48891 * 279.18596 * 5 4 2 32 32 H 1.08998 * 110.48494 * 156.67683 * 5 4 2 33 33 H 1.09000 * 109.47350 * 53.54721 * 8 6 5 34 34 H 1.09003 * 109.47056 * 173.54811 * 8 6 5 35 35 H 0.96995 * 120.00216 * 0.02562 * 9 8 6 36 36 H 0.97003 * 120.00157 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.47123 * 300.00536 * 13 12 10 38 38 H 1.08998 * 109.47201 * 60.00276 * 13 12 10 39 39 H 0.96993 * 120.00669 * 0.02562 * 16 14 13 40 40 H 0.96996 * 119.99844 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.04012 * 119.28327 * 25 6 5 42 42 H 1.09003 * 110.03070 * 240.71854 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0757 -0.7826 -1.2246 5 6 3.4938 -1.1945 -0.7572 6 6 3.3186 -1.5367 0.7368 7 1 3.1732 -2.6100 0.8594 8 6 4.5474 -1.0812 1.5264 9 7 5.7107 -1.8729 1.1190 10 6 6.9125 -1.6450 1.6849 11 8 7.0311 -0.7828 2.5339 12 7 7.9829 -2.3729 1.3098 13 6 9.2894 -2.1249 1.9245 14 6 10.3090 -3.0645 1.3339 15 8 9.9771 -3.8624 0.4829 16 7 11.5896 -3.0180 1.7515 17 6 12.5171 -3.8732 1.2145 18 1 12.2216 -4.5837 0.4567 19 6 13.8372 -3.8257 1.6454 20 7 14.1967 -2.9615 2.5678 21 14 15.1010 -4.9903 0.9133 22 1 15.1932 -4.7636 -0.5513 23 1 16.4249 -4.7402 1.5377 24 1 14.6894 -6.3935 1.1721 25 6 2.0700 -0.7773 1.2182 26 1 -0.3633 0.4738 0.9119 27 1 -0.3634 0.5527 -0.8663 28 1 -0.3633 -1.0267 -0.0455 29 1 2.1301 -0.1404 -2.1036 30 1 1.4642 -1.6624 -1.4247 31 1 4.1915 -0.3660 -0.8795 32 1 3.8393 -2.0677 -1.3106 33 1 4.7373 -0.0266 1.3264 34 1 4.3672 -1.2222 2.5922 35 1 5.6163 -2.5605 0.4414 36 1 7.8885 -3.0606 0.6322 37 1 9.5912 -1.0951 1.7335 38 1 9.2223 -2.2904 2.9998 39 1 11.8550 -2.3802 2.4323 40 1 15.1183 -2.9281 2.8683 41 1 1.3185 -1.4819 1.5745 42 1 2.3390 -0.0833 2.0145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346259130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:00 Heat of formation + Delta-G solvation = -95.995310 kcal Electronic energy + Delta-G solvation = -21558.404471 eV Core-core repulsion = 18151.148681 eV Total energy + Delta-G solvation = -3407.255790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96512 -38.90444 -38.09628 -34.84131 -34.33835 -33.60645 -31.60941 -31.32184 -29.62809 -27.70357 -25.97926 -24.50604 -23.72813 -20.77418 -20.58398 -19.81082 -19.55637 -18.29123 -17.89166 -16.61919 -15.78034 -15.60306 -15.37808 -15.20874 -14.61261 -14.27395 -14.22887 -13.95839 -13.86468 -13.50195 -13.39126 -13.25371 -12.80939 -12.18928 -12.15276 -11.85826 -11.61647 -11.43671 -11.18557 -11.09965 -11.06341 -10.94887 -10.85250 -10.69696 -10.49786 -10.30267 -9.98893 -9.61126 -9.10819 -8.60574 -8.55088 -8.08320 -6.49721 -3.91821 2.87911 3.14801 3.22416 3.26487 3.45264 3.77357 4.09890 4.19512 4.26813 4.35945 4.55960 4.78881 4.92966 4.96017 5.10192 5.15573 5.18859 5.23456 5.30624 5.32493 5.46480 5.51190 5.60183 5.70568 5.76607 5.78579 5.83338 5.92752 5.96801 6.03744 6.10686 6.10792 6.12617 6.56922 6.79447 7.14701 7.47254 7.93968 8.28530 8.47123 8.84486 9.06167 9.41387 9.89408 10.67122 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.052690 B = 0.002334 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.285295 B =11992.262425 C =12354.617189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.105 4.105 7 H 0.078 0.922 8 C 0.148 3.852 9 N -0.749 5.749 10 C 0.704 3.296 11 O -0.600 6.600 12 N -0.725 5.725 13 C 0.129 3.871 14 C 0.429 3.571 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C -0.113 4.113 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.406 0.594 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.068 0.932 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.180 4.760 -4.010 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.160 4.160 6 C -0.124 4.124 7 H 0.097 0.903 8 C 0.023 3.977 9 N -0.405 5.405 10 C 0.403 3.597 11 O -0.479 6.479 12 N -0.383 5.383 13 C 0.000 4.000 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.184 5.184 17 C -0.435 4.435 18 H 0.122 0.878 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.151 4.151 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.243 0.757 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.048 5.064 -3.673 23.882 hybrid contribution 0.841 -0.794 -0.475 1.250 sum -22.208 4.271 -4.148 22.992 Atomic orbital electron populations 1.21804 0.95081 1.01732 1.01569 1.22047 0.95362 0.99443 0.94883 0.90738 1.22627 0.96059 0.99719 0.97364 1.22473 0.97281 1.01593 0.94688 1.22030 0.94257 1.00714 0.95362 0.90344 1.21301 0.82844 0.95104 0.98424 1.45057 1.07711 1.42095 1.45643 1.15874 0.80322 0.81868 0.81633 1.90901 1.84804 1.36308 1.35848 1.44776 1.07310 1.40765 1.45412 1.20773 0.81926 0.99507 0.97773 1.19774 0.83907 0.87830 0.87029 1.90484 1.79677 1.42313 1.36034 1.41783 1.06364 1.33779 1.36498 1.19677 0.88102 1.14841 1.20855 0.87756 1.25328 0.98219 0.97789 0.96430 1.69609 1.19518 1.35387 1.28978 0.85865 0.78866 0.80086 0.79093 1.19799 1.20868 1.19805 1.22193 0.96100 0.98916 0.97859 0.92711 0.92787 0.92665 0.91642 0.91471 0.91095 0.91535 0.91686 0.91836 0.77052 0.75654 0.90065 0.90054 0.77003 0.91551 0.91363 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.13 37.16 0.34 -0.48 16 2 C -0.10 -0.64 3.46 -88.77 -0.31 -0.95 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.79 6.36 -24.55 -0.16 -0.95 16 5 C -0.12 -0.91 6.00 -25.07 -0.15 -1.06 16 6 C -0.10 -0.80 2.98 -89.51 -0.27 -1.07 16 7 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 8 C 0.15 1.56 4.73 -4.04 -0.02 1.54 16 9 N -0.75 -9.13 5.39 -65.22 -0.35 -9.49 16 10 C 0.70 11.73 8.57 -86.92 -0.74 10.98 16 11 O -0.60 -12.08 16.34 5.29 0.09 -11.99 16 12 N -0.73 -12.47 5.53 -66.41 -0.37 -12.84 16 13 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 14 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 15 O -0.60 -15.41 15.24 5.55 0.08 -15.32 16 16 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 17 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 18 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -24.03 13.05 55.50 0.72 -23.30 16 21 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C -0.11 -0.77 6.03 -25.62 -0.15 -0.93 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.13 -51.93 -0.42 -0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 31 H 0.07 0.60 7.78 -51.93 -0.40 0.20 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.93 8.32 -40.82 -0.34 3.59 16 36 H 0.41 6.75 7.45 -40.82 -0.30 6.44 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 42 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -31.62 348.08 -8.23 -39.84 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.75 Total: 14.60 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -1.82 Total: 11.46 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.05 Total: -59.44 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: 0.17 Total: -27.31 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.62 -8.23 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346259130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.151 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds