Wall clock time and date at job start Tue Mar 31 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.43291 * 2 1 4 4 C 1.55238 * 110.58012 * 237.41750 * 2 1 3 5 5 C 1.54894 * 102.58338 * 203.33342 * 4 2 1 6 6 C 1.54266 * 104.31305 * 37.93170 * 5 4 2 7 7 H 1.09001 * 110.03084 * 95.60669 * 6 5 4 8 8 C 1.52999 * 110.03121 * 216.98718 * 6 5 4 9 9 N 1.46502 * 109.47011 * 293.54451 * 8 6 5 10 10 C 1.34774 * 119.99687 * 179.97438 * 9 8 6 11 11 O 1.21588 * 120.00570 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00121 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00411 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47202 * 180.02562 * 13 12 10 15 15 O 1.21285 * 119.99857 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99612 * 180.02562 * 14 13 12 17 17 C 1.37106 * 119.99754 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99991 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00019 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99943 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47361 * 59.99730 * 21 19 17 23 23 H 1.48498 * 109.47428 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46785 * 299.99837 * 21 19 17 25 25 C 1.53869 * 106.60031 * 336.32486 * 6 5 4 26 26 H 1.09002 * 109.47015 * 297.45451 * 1 2 3 27 27 H 1.08997 * 109.47536 * 57.46280 * 1 2 3 28 28 H 1.09001 * 109.46911 * 177.46124 * 1 2 3 29 29 H 1.08996 * 110.89448 * 85.04906 * 4 2 1 30 30 H 1.08993 * 110.76342 * 321.56571 * 4 2 1 31 31 H 1.09002 * 110.48891 * 279.18596 * 5 4 2 32 32 H 1.08998 * 110.48494 * 156.67683 * 5 4 2 33 33 H 1.09000 * 109.47350 * 53.54721 * 8 6 5 34 34 H 1.09003 * 109.47056 * 173.54811 * 8 6 5 35 35 H 0.96995 * 120.00216 * 0.02562 * 9 8 6 36 36 H 0.97003 * 120.00157 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.47123 * 300.00536 * 13 12 10 38 38 H 1.08998 * 109.47201 * 60.00276 * 13 12 10 39 39 H 0.96993 * 120.00669 * 0.02562 * 16 14 13 40 40 H 0.96996 * 119.99844 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.04012 * 119.28327 * 25 6 5 42 42 H 1.09003 * 110.03070 * 240.71854 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0757 -0.7826 -1.2246 5 6 3.4938 -1.1945 -0.7572 6 6 3.3186 -1.5367 0.7368 7 1 3.1732 -2.6100 0.8594 8 6 4.5474 -1.0812 1.5264 9 7 5.7107 -1.8729 1.1190 10 6 6.9125 -1.6450 1.6849 11 8 7.0311 -0.7828 2.5339 12 7 7.9829 -2.3729 1.3098 13 6 9.2894 -2.1249 1.9245 14 6 10.3090 -3.0645 1.3339 15 8 9.9771 -3.8624 0.4829 16 7 11.5896 -3.0180 1.7515 17 6 12.5171 -3.8732 1.2145 18 1 12.2216 -4.5837 0.4567 19 6 13.8372 -3.8257 1.6454 20 7 14.1967 -2.9615 2.5678 21 14 15.1010 -4.9903 0.9133 22 1 15.1932 -4.7636 -0.5513 23 1 16.4249 -4.7402 1.5377 24 1 14.6894 -6.3935 1.1721 25 6 2.0700 -0.7773 1.2182 26 1 -0.3633 0.4738 0.9119 27 1 -0.3634 0.5527 -0.8663 28 1 -0.3633 -1.0267 -0.0455 29 1 2.1301 -0.1404 -2.1036 30 1 1.4642 -1.6624 -1.4247 31 1 4.1915 -0.3660 -0.8795 32 1 3.8393 -2.0677 -1.3106 33 1 4.7373 -0.0266 1.3264 34 1 4.3672 -1.2222 2.5922 35 1 5.6163 -2.5605 0.4414 36 1 7.8885 -3.0606 0.6322 37 1 9.5912 -1.0951 1.7335 38 1 9.2223 -2.2904 2.9998 39 1 11.8550 -2.3802 2.4323 40 1 15.1183 -2.9281 2.8683 41 1 1.3185 -1.4819 1.5745 42 1 2.3390 -0.0833 2.0145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346259130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:00 Heat of formation + Delta-G solvation = -118.342869 kcal Electronic energy + Delta-G solvation = -21559.373534 eV Core-core repulsion = 18151.148681 eV Total energy + Delta-G solvation = -3408.224852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25386 -40.13549 -39.43679 -36.27118 -35.77673 -35.25648 -33.37262 -32.30518 -30.30720 -29.14845 -26.99688 -26.06499 -24.57729 -22.01233 -21.37381 -21.21102 -20.52498 -20.08514 -19.35995 -17.69856 -17.39142 -16.96947 -16.52978 -16.34955 -16.16400 -15.82621 -15.58599 -15.17536 -14.97807 -14.52815 -14.39197 -13.94951 -13.78288 -13.69641 -13.53122 -13.38946 -12.89277 -12.69031 -12.46405 -12.13252 -12.06251 -11.77327 -11.71372 -11.55610 -11.52924 -11.41588 -11.34095 -11.26187 -10.55196 -10.42247 -10.09795 -9.79408 -8.50170 -6.00595 1.38764 1.42911 1.53405 1.64192 1.90483 2.12596 2.29435 3.05741 3.16875 3.34156 3.62122 3.69956 3.79529 4.20322 4.22440 4.33734 4.44011 4.46646 4.49143 4.60143 4.65553 4.73457 4.76390 4.81695 4.94593 4.98727 5.12691 5.17674 5.21224 5.31622 5.35937 5.37920 5.39138 5.46504 5.57004 5.60942 5.91964 5.97390 6.48668 7.03832 7.04434 7.43371 7.54393 7.94924 8.66476 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.052690 B = 0.002334 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.285295 B =11992.262425 C =12354.617189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.124 4.124 6 C -0.095 4.095 7 H 0.088 0.912 8 C 0.148 3.852 9 N -0.730 5.730 10 C 0.702 3.298 11 O -0.635 6.635 12 N -0.724 5.724 13 C 0.142 3.858 14 C 0.434 3.566 15 O -0.624 6.624 16 N -0.559 5.559 17 C -0.338 4.338 18 H 0.087 0.913 19 C -0.012 4.012 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.112 4.112 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.410 0.590 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.077 0.923 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.064 4.311 -4.506 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.086 0.914 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.114 4.114 7 H 0.106 0.894 8 C 0.024 3.976 9 N -0.387 5.387 10 C 0.402 3.598 11 O -0.517 6.517 12 N -0.382 5.382 13 C 0.013 3.987 14 C 0.221 3.779 15 O -0.512 6.512 16 N -0.195 5.195 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.213 4.213 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.150 4.150 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.245 0.755 36 H 0.248 0.752 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.976 4.613 -4.187 24.772 hybrid contribution 1.034 -0.620 -0.323 1.249 sum -22.942 3.992 -4.510 23.720 Atomic orbital electron populations 1.21784 0.94267 1.02089 1.01834 1.22049 0.96042 0.99044 0.94664 0.91357 1.22617 0.95436 1.00021 0.97392 1.22470 0.97705 1.01404 0.94535 1.21980 0.93056 1.01294 0.95060 0.89352 1.21426 0.83165 0.94438 0.98594 1.44983 1.06654 1.42034 1.44989 1.15997 0.81071 0.81314 0.81426 1.90878 1.85459 1.37808 1.37542 1.44688 1.06894 1.41100 1.45526 1.20575 0.81597 0.98572 0.97959 1.20403 0.83955 0.87508 0.86045 1.90461 1.80170 1.43479 1.37070 1.41835 1.06856 1.33903 1.36888 1.19709 0.89383 1.15875 1.21735 0.89511 1.26153 0.99507 0.99093 0.96510 1.69679 1.20208 1.36221 1.29488 0.84909 0.76605 0.77978 0.78374 1.19468 1.19665 1.19477 1.22200 0.95828 0.99011 0.97934 0.92542 0.92480 0.92243 0.91461 0.90742 0.92350 0.90911 0.92728 0.92527 0.75455 0.75212 0.89157 0.89122 0.76698 0.91071 0.90391 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.13 71.98 0.66 -0.70 16 2 C -0.10 -1.15 3.46 -9.60 -0.03 -1.18 16 3 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 4 C -0.12 -1.33 6.36 32.01 0.20 -1.13 16 5 C -0.12 -1.65 6.00 31.67 0.19 -1.46 16 6 C -0.10 -1.30 2.98 -10.07 -0.03 -1.33 16 7 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 8 C 0.15 2.98 4.73 86.38 0.41 3.39 16 9 N -0.73 -16.98 5.39 -478.53 -2.58 -19.56 16 10 C 0.70 22.85 8.57 179.06 1.53 24.39 16 11 O -0.63 -25.31 16.34 -3.99 -0.07 -25.38 16 12 N -0.72 -24.33 5.53 -482.30 -2.67 -27.00 16 13 C 0.14 5.31 6.15 85.63 0.53 5.84 16 14 C 0.43 20.18 7.85 87.66 0.69 20.87 16 15 O -0.62 -32.23 15.24 -3.05 -0.05 -32.28 16 16 N -0.56 -28.29 5.29 -306.99 -1.62 -29.91 16 17 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 18 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 20 N -0.92 -48.88 13.05 21.66 0.28 -48.59 16 21 Si 1.00 41.79 29.55 68.60 2.03 43.82 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 C -0.11 -1.36 6.03 31.32 0.19 -1.17 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.52 8.13 -2.39 -0.02 0.50 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.76 8.05 -2.39 -0.02 0.74 16 31 H 0.06 0.94 7.78 -2.39 -0.02 0.92 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 1.24 8.04 -2.39 -0.02 1.22 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.41 7.44 8.32 -92.71 -0.77 6.66 16 36 H 0.41 13.27 7.45 -92.71 -0.69 12.58 16 37 H 0.09 3.26 8.14 -2.39 -0.02 3.25 16 38 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 40 H 0.28 14.00 8.31 -92.71 -0.77 13.22 16 41 H 0.08 0.82 7.84 -2.39 -0.02 0.80 16 42 H 0.06 0.85 7.67 -2.39 -0.02 0.83 16 Total: -1.00 -66.66 348.08 -0.21 -66.87 By element: Atomic # 1 Polarization: 43.67 SS G_CDS: -1.15 Total: 42.51 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 5.61 Total: 29.52 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -6.59 Total: -125.06 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -0.11 Total: -57.65 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -66.66 -0.21 -66.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346259130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.477 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds