Wall clock time and date at job start Tue Mar 31 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.54268 * 110.03412 * 121.39209 * 2 1 3 5 5 C 1.54887 * 104.19498 * 142.89489 * 4 2 1 6 6 C 1.54888 * 102.75281 * 322.05663 * 5 4 2 7 7 C 1.53875 * 110.03401 * 238.61204 * 2 1 3 8 8 H 1.09000 * 110.03798 * 121.42953 * 7 2 1 9 9 C 1.53007 * 110.03147 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47091 * 175.00536 * 9 7 2 11 11 C 1.34775 * 120.00013 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00155 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00261 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99779 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.46545 * 180.02562 * 14 13 11 16 16 O 1.21286 * 120.00591 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99794 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00389 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99463 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00389 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99860 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00041 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47162 * 90.00030 * 22 20 18 24 24 H 1.48499 * 109.47019 * 210.00115 * 22 20 18 25 25 H 1.48503 * 109.46995 * 329.99896 * 22 20 18 26 26 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 28 28 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 29 29 H 1.08997 * 110.48505 * 261.56885 * 4 2 1 30 30 H 1.08996 * 110.48682 * 24.21865 * 4 2 1 31 31 H 1.09005 * 110.75937 * 80.37435 * 5 4 2 32 32 H 1.08996 * 110.75770 * 203.55913 * 5 4 2 33 33 H 1.09002 * 110.49085 * 156.61711 * 6 5 4 34 34 H 1.08992 * 110.48719 * 279.26678 * 6 5 4 35 35 H 1.09006 * 109.46446 * 295.00242 * 9 7 2 36 36 H 1.08999 * 109.46990 * 54.99728 * 9 7 2 37 37 H 0.97009 * 120.00487 * 359.97438 * 10 9 7 38 38 H 0.96999 * 119.99830 * 0.02562 * 13 11 10 39 39 H 1.08993 * 109.47332 * 299.99952 * 14 13 11 40 40 H 1.08995 * 109.46772 * 60.00836 * 14 13 11 41 41 H 0.97006 * 119.99669 * 359.97438 * 17 15 14 42 42 H 0.97008 * 120.00011 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 3.3137 -1.5004 0.7197 6 6 2.8875 -1.9410 -0.7027 7 6 2.0571 -0.7529 -1.2341 8 1 2.6867 -0.0945 -1.8325 9 6 0.8861 -1.2664 -2.0745 10 7 1.3980 -1.8759 -3.3043 11 6 0.5418 -2.3996 -4.2038 12 8 -0.6554 -2.3666 -3.9944 13 7 1.0127 -2.9599 -5.3356 14 6 0.0819 -3.5296 -6.3131 15 6 0.8572 -4.0885 -7.4783 16 8 2.0680 -4.0184 -7.4908 17 7 0.2051 -4.6664 -8.5065 18 6 0.9103 -5.1754 -9.5663 19 1 1.9884 -5.1129 -9.5774 20 6 0.2380 -5.7716 -10.6261 21 7 -1.0738 -5.8481 -10.6123 22 14 1.1989 -6.4644 -12.0704 23 1 1.5326 -7.8871 -11.8062 24 1 0.3765 -6.3696 -13.3032 25 1 2.4516 -5.6873 -12.2500 26 1 -0.3633 0.5247 0.8837 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3634 0.5029 -0.8962 29 1 2.3298 -0.0527 2.0254 30 1 1.3143 -1.4653 1.5972 31 1 4.1711 -0.8287 0.6754 32 1 3.5345 -2.3654 1.3451 33 1 3.7638 -2.1042 -1.3302 34 1 2.2772 -2.8428 -0.6559 35 1 0.3289 -2.0103 -1.5049 36 1 0.2283 -0.4349 -2.3274 37 1 2.3532 -1.9019 -3.4717 38 1 1.9678 -2.9866 -5.5026 39 1 -0.4941 -4.3273 -5.8442 40 1 -0.5950 -2.7518 -6.6663 41 1 -0.7633 -4.7229 -8.4963 42 1 -1.5431 -6.2647 -11.3520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346291254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:44 Heat of formation + Delta-G solvation = -112.900540 kcal Electronic energy + Delta-G solvation = -21840.820636 eV Core-core repulsion = 18432.831781 eV Total energy + Delta-G solvation = -3407.988855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28970 -40.22394 -39.58378 -36.25566 -35.52826 -35.25049 -33.36850 -32.33634 -30.82799 -28.94415 -26.55783 -25.91958 -25.07617 -22.08133 -21.52825 -21.35941 -20.20550 -20.02801 -19.09633 -17.71596 -17.36674 -17.00168 -16.75546 -16.42626 -15.96351 -15.79597 -15.65934 -15.15037 -15.09641 -14.72870 -14.49620 -13.94386 -13.71631 -13.54285 -13.37764 -13.30735 -12.97800 -12.89468 -12.45255 -12.12338 -11.90475 -11.74691 -11.65756 -11.56609 -11.53916 -11.46632 -11.33042 -11.22637 -10.55252 -10.39714 -10.09778 -9.76563 -8.50557 -6.00833 1.36908 1.42847 1.54920 1.65166 1.90289 2.13442 2.29258 3.05892 3.16691 3.34488 3.62306 3.68393 3.76510 4.21718 4.29457 4.40545 4.43679 4.46103 4.46953 4.53240 4.56379 4.67696 4.73319 4.89470 4.94046 5.01609 5.07729 5.14938 5.27007 5.31879 5.33051 5.38925 5.39413 5.49974 5.57757 5.58745 5.92009 5.97886 6.48565 7.03846 7.05143 7.43394 7.55241 7.94869 8.66428 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.045696 B = 0.002510 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.602284 B =11153.284927 C =11593.835687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.084 0.916 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.095 4.095 8 H 0.088 0.912 9 C 0.146 3.854 10 N -0.732 5.732 11 C 0.702 3.298 12 O -0.634 6.634 13 N -0.725 5.725 14 C 0.142 3.858 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.560 5.560 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.012 4.012 21 N -0.917 5.917 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.408 0.592 38 H 0.410 0.590 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.399 0.601 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 10.402 21.121 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 H 0.102 0.898 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.160 4.160 7 C -0.113 4.113 8 H 0.106 0.894 9 C 0.022 3.978 10 N -0.388 5.388 11 C 0.402 3.598 12 O -0.516 6.516 13 N -0.382 5.382 14 C 0.013 3.987 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.195 5.195 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.557 5.557 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.194 1.194 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.244 0.756 38 H 0.248 0.752 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.390 10.400 21.155 24.182 hybrid contribution 0.382 -0.555 -1.072 1.266 sum 5.773 9.845 20.084 23.100 Atomic orbital electron populations 1.22013 0.95342 1.01794 1.01971 1.21708 0.95516 0.99648 0.93498 0.89757 1.22466 0.97236 0.99034 0.96990 1.22477 0.97907 1.00180 0.95481 1.22497 0.99385 0.97060 0.97104 1.22065 0.95368 0.97605 0.96300 0.89354 1.21600 0.96586 0.96686 0.82907 1.45047 1.09534 1.63261 1.20945 1.15994 0.85167 0.78472 0.80179 1.90876 1.15469 1.65994 1.79277 1.44692 1.11189 1.62848 1.19509 1.20575 0.91283 0.99162 0.87686 1.20406 0.88229 0.83800 0.85428 1.90462 1.15358 1.64093 1.81258 1.41842 1.09819 1.50674 1.17195 1.19736 0.92987 1.36147 0.97721 0.89546 1.26143 0.96716 0.97030 1.01333 1.69685 1.07757 1.44017 1.34208 0.84858 0.77855 0.78533 0.76679 1.19539 1.19669 1.19413 0.91817 0.93029 0.92768 0.90661 0.91876 0.90732 0.91329 0.90942 0.92425 0.92592 0.92125 0.75580 0.75239 0.89161 0.89123 0.76700 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 7.87 71.98 0.57 -1.59 16 2 C -0.08 -1.04 3.50 -10.07 -0.04 -1.07 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.12 -1.32 6.36 31.67 0.20 -1.12 16 5 C -0.12 -1.36 6.91 31.88 0.22 -1.14 16 6 C -0.12 -1.65 6.09 31.71 0.19 -1.46 16 7 C -0.09 -1.32 2.97 -10.03 -0.03 -1.35 16 8 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 9 C 0.15 2.97 3.78 86.38 0.33 3.30 16 10 N -0.73 -17.16 5.41 -478.53 -2.59 -19.75 16 11 C 0.70 22.91 8.57 179.05 1.53 24.44 16 12 O -0.63 -25.25 16.34 -4.00 -0.07 -25.31 16 13 N -0.72 -24.40 5.53 -482.29 -2.67 -27.07 16 14 C 0.14 5.32 6.15 85.63 0.53 5.85 16 15 C 0.43 20.22 7.85 87.66 0.69 20.91 16 16 O -0.62 -32.28 15.24 -3.05 -0.05 -32.32 16 17 N -0.56 -28.33 5.29 -306.99 -1.62 -29.96 16 18 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 19 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 22 Si 1.00 41.83 29.55 68.60 2.03 43.85 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.83 6.82 -2.39 -0.02 0.81 16 28 H 0.05 0.84 6.66 -2.38 -0.02 0.82 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.77 7.84 -2.39 -0.02 0.75 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.94 7.76 -2.39 -0.02 0.92 16 35 H 0.06 1.29 6.89 -2.38 -0.02 1.27 16 36 H 0.06 1.36 6.44 -2.39 -0.02 1.34 16 37 H 0.41 7.52 8.37 -92.70 -0.78 6.74 16 38 H 0.41 13.31 7.45 -92.71 -0.69 12.62 16 39 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.40 19.44 7.90 -92.70 -0.73 18.71 16 42 H 0.28 13.97 8.31 -92.70 -0.77 13.19 16 Total: -1.00 -66.71 341.85 -0.35 -67.06 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -1.15 Total: 43.35 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 5.47 Total: 28.82 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -6.60 Total: -125.45 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -0.11 Total: -57.64 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -66.71 -0.35 -67.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346291254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.838 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds