Wall clock time and date at job start Tue Mar 31 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46968 * 2 1 4 4 C 1.52997 * 109.47302 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47496 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99670 * 270.00165 * 5 4 3 7 7 O 1.21594 * 119.99917 * 189.13164 * 6 5 4 8 8 N 1.34779 * 120.00603 * 9.12840 * 6 5 4 9 9 C 1.46490 * 120.00251 * 183.93651 * 8 6 5 10 10 C 1.50705 * 109.47205 * 180.02562 * 9 8 6 11 11 O 1.21294 * 119.99510 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99995 * 180.02562 * 10 9 8 13 13 C 1.37107 * 119.99677 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99681 * 0.02562 * 13 12 10 15 15 C 1.38952 * 119.99765 * 179.97438 * 13 12 10 16 16 N 1.31410 * 119.99876 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99830 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47024 * 60.00427 * 17 15 13 19 19 H 1.48506 * 109.46958 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47168 * 300.00294 * 17 15 13 21 21 C 1.46501 * 120.00044 * 89.99534 * 5 4 3 22 22 C 1.52999 * 117.49708 * 195.82555 * 21 5 4 23 23 C 1.52990 * 60.00335 * 252.51437 * 22 21 5 24 24 H 1.08997 * 109.47380 * 60.00398 * 1 2 3 25 25 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46944 * 299.99883 * 1 2 3 27 27 H 1.08995 * 109.47232 * 240.00095 * 2 1 3 28 28 H 1.08997 * 109.47380 * 119.99601 * 2 1 3 29 29 H 1.08996 * 109.47497 * 59.99680 * 3 2 1 30 30 H 1.09005 * 109.47042 * 300.00060 * 3 2 1 31 31 H 1.09005 * 109.46961 * 59.99374 * 4 3 2 32 32 H 1.09005 * 109.46979 * 299.99924 * 4 3 2 33 33 H 0.97006 * 119.98988 * 3.93965 * 8 6 5 34 34 H 1.08998 * 109.47809 * 300.00075 * 9 8 6 35 35 H 1.09008 * 109.47403 * 60.00363 * 9 8 6 36 36 H 0.96997 * 120.00337 * 359.97438 * 12 10 9 37 37 H 0.97006 * 119.99789 * 179.97438 * 16 15 13 38 38 H 1.08988 * 115.54991 * 341.53920 * 21 5 4 39 39 H 1.08998 * 117.50253 * 0.02562 * 22 21 5 40 40 H 1.08999 * 117.49637 * 145.02393 * 22 21 5 41 41 H 1.08997 * 117.50339 * 252.51497 * 23 22 21 42 42 H 1.09006 * 117.52044 * 107.48108 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2823 3.4587 -1.1688 7 8 4.8414 4.5385 -1.1761 8 7 3.8869 2.8969 -2.3283 9 6 4.2065 3.5448 -3.6027 10 6 3.6552 2.7205 -4.7375 11 8 3.0540 1.6931 -4.5045 12 7 3.8302 3.1249 -6.0112 13 6 3.3290 2.3747 -7.0436 14 1 2.7937 1.4599 -6.8360 15 6 3.5090 2.7919 -8.3567 16 7 4.1599 3.9052 -8.6090 17 14 2.8268 1.7694 -9.7633 18 1 1.3530 1.6543 -9.6222 19 1 3.1511 2.4260 -11.0552 20 1 3.4345 0.4149 -9.7307 21 6 4.3029 3.5148 1.2672 22 6 4.4486 5.0373 1.2255 23 6 5.6767 4.1577 1.4678 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9288 -0.8908 32 1 3.9337 0.9287 0.8892 33 1 3.3906 2.0635 -2.3188 34 1 3.7609 4.5393 -3.6266 35 1 5.2884 3.6288 -3.7064 36 1 4.3106 3.9467 -6.1975 37 1 4.2858 4.1963 -9.5258 38 1 3.8187 3.0790 2.1409 39 1 4.3620 5.5248 0.2545 40 1 4.0600 5.6034 2.0721 41 1 6.0961 4.1450 2.4738 42 1 6.3987 4.0661 0.6563 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358269007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:43 Heat of formation + Delta-G solvation = -60.303152 kcal Electronic energy + Delta-G solvation = -22585.310133 eV Core-core repulsion = 19179.602071 eV Total energy + Delta-G solvation = -3405.708061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72022 -40.19680 -37.84699 -37.12281 -36.13453 -35.11889 -34.05214 -33.35258 -29.77789 -29.01867 -26.48384 -24.62635 -23.71760 -23.20651 -22.01932 -21.37094 -21.00494 -20.04938 -18.74640 -17.80016 -17.45253 -16.92536 -16.53670 -16.29870 -16.09078 -15.85383 -15.79430 -15.18192 -14.85217 -14.73375 -14.08635 -14.04149 -13.85639 -13.70867 -13.54265 -13.29153 -12.90951 -12.71998 -12.47505 -12.35725 -12.16359 -12.13509 -11.93112 -11.74243 -11.56660 -11.46738 -11.20073 -10.83233 -10.56539 -10.19155 -10.08833 -9.31400 -8.51214 -6.01679 1.37716 1.41562 1.48894 1.55419 1.87862 2.00010 2.27361 2.75659 3.06881 3.15445 3.16395 3.85714 3.95682 4.00467 4.12189 4.18748 4.21550 4.24100 4.36287 4.40174 4.43402 4.59539 4.68409 4.73631 4.86067 4.89507 4.98441 5.07636 5.10363 5.27802 5.33229 5.37130 5.38016 5.47731 5.51590 5.75510 5.88667 5.91620 6.47260 6.88354 7.02681 7.40961 7.50636 7.93333 8.65524 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.003946 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.024688 B = 7093.930342 C = 8509.334209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.701 3.299 7 O -0.614 6.614 8 N -0.726 5.726 9 C 0.140 3.860 10 C 0.433 3.567 11 O -0.623 6.623 12 N -0.558 5.558 13 C -0.338 4.338 14 H 0.087 0.913 15 C -0.010 4.010 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.269 1.269 21 C 0.090 3.910 22 C -0.203 4.203 23 C -0.184 4.184 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.408 0.592 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.398 0.602 37 H 0.280 0.720 38 H 0.167 0.833 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -3.815 20.020 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.173 4.173 4 C -0.013 4.013 5 N -0.334 5.334 6 C 0.403 3.597 7 O -0.495 6.495 8 N -0.385 5.385 9 C 0.011 3.989 10 C 0.220 3.780 11 O -0.511 6.511 12 N -0.194 5.194 13 C -0.467 4.467 14 H 0.105 0.895 15 C -0.210 4.210 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.195 1.195 19 H -0.196 1.196 20 H -0.194 1.194 21 C -0.013 4.013 22 C -0.240 4.240 23 C -0.223 4.223 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.247 0.753 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.184 0.816 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.734 -3.640 19.943 20.346 hybrid contribution -0.166 -0.091 -1.330 1.343 sum -1.900 -3.731 18.613 19.078 Atomic orbital electron populations 1.21762 0.95740 1.02011 1.01522 1.21443 0.96146 0.95399 1.02772 1.22033 0.94938 0.98100 1.02196 1.21800 0.94350 0.80598 1.04509 1.46593 1.69085 1.14550 1.03140 1.16073 0.79409 0.83437 0.80813 1.90766 1.49759 1.22679 1.86329 1.44993 1.60754 1.29026 1.03730 1.20584 1.01126 0.95749 0.81400 1.20376 0.85298 0.87826 0.84493 1.90463 1.48174 1.28145 1.84294 1.41823 1.49280 1.23874 1.04374 1.19712 1.34583 1.06795 0.85655 0.89526 1.26131 0.96688 0.97592 1.00619 1.69679 1.40743 1.22600 1.22595 0.84930 0.78673 0.77986 0.76418 1.19467 1.19608 1.19424 1.21865 1.00467 0.92902 0.86116 1.23684 1.02361 0.93462 1.04521 1.23241 0.91591 1.04803 1.02675 0.94322 0.91962 0.91861 0.92729 0.89611 0.90224 0.94273 0.91516 0.86624 0.75292 0.89245 0.89161 0.76738 0.91048 0.81589 0.88291 0.87079 0.86073 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 71.98 0.71 -1.88 16 2 C -0.12 -1.99 5.93 30.59 0.18 -1.81 16 3 C -0.13 -2.54 5.42 30.59 0.17 -2.37 16 4 C 0.11 2.12 5.06 86.38 0.44 2.56 16 5 N -0.60 -14.99 2.84 -815.71 -2.31 -17.31 16 6 C 0.70 23.46 8.04 179.05 1.44 24.90 16 7 O -0.61 -23.63 12.10 -4.01 -0.05 -23.68 16 8 N -0.73 -25.58 5.31 -482.29 -2.56 -28.14 16 9 C 0.14 5.38 6.16 85.64 0.53 5.90 16 10 C 0.43 20.42 7.85 87.66 0.69 21.10 16 11 O -0.62 -32.54 15.24 -3.07 -0.05 -32.58 16 12 N -0.56 -28.41 5.29 -306.98 -1.62 -30.03 16 13 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 14 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 15 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 16 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 17 Si 1.00 41.83 29.55 68.60 2.03 43.86 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 21 C 0.09 1.83 6.61 44.99 0.30 2.13 16 22 C -0.20 -4.79 9.62 30.59 0.29 -4.50 16 23 C -0.18 -4.01 9.87 30.59 0.30 -3.71 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 0.99 7.64 -2.38 -0.02 0.97 16 31 H 0.07 1.50 6.85 -2.38 -0.02 1.48 16 32 H 0.12 1.49 8.07 -2.38 -0.02 1.47 16 33 H 0.41 14.31 4.93 -92.70 -0.46 13.85 16 34 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 36 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 37 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 38 H 0.17 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.10 3.20 5.29 -2.83 -0.01 3.19 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 41 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 1.90 7.54 -2.38 -0.02 1.88 16 Total: -1.00 -66.74 347.61 1.88 -64.85 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -0.16 Total: 47.39 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 6.33 Total: 24.36 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -6.21 Total: -124.20 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -0.10 Total: -56.26 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -66.74 1.88 -64.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358269007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.548 kcal (2) G-P(sol) polarization free energy of solvation -66.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds