Wall clock time and date at job start Tue Mar 31 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46951 * 2 1 4 4 H 1.08996 * 109.99929 * 53.70352 * 3 2 1 5 5 C 1.54328 * 109.98956 * 292.66159 * 3 2 1 6 6 C 1.55163 * 103.02106 * 218.66536 * 5 3 2 7 7 H 1.08998 * 111.00261 * 153.37786 * 6 5 3 8 8 C 1.52999 * 111.03720 * 277.22096 * 6 5 3 9 9 C 1.54907 * 101.57914 * 35.31144 * 6 5 3 10 10 N 1.47023 * 109.87869 * 174.79764 * 3 2 1 11 11 C 1.34779 * 125.65079 * 298.38868 * 10 3 2 12 12 O 1.21590 * 119.99556 * 354.68844 * 11 10 3 13 13 N 1.34768 * 120.00119 * 174.68091 * 11 10 3 14 14 C 1.46500 * 119.99908 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47187 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00214 * 0.02562 * 15 14 13 17 17 N 1.34785 * 120.00199 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99852 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00048 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99698 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99951 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00172 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47211 * 59.99886 * 22 20 18 24 24 H 1.48499 * 109.46969 * 300.00044 * 22 20 18 25 25 H 1.48498 * 109.47354 * 179.97438 * 22 20 18 26 26 H 1.09001 * 109.46893 * 65.13337 * 1 2 3 27 27 H 1.08997 * 109.46993 * 185.12790 * 1 2 3 28 28 H 1.09002 * 109.47076 * 305.13281 * 1 2 3 29 29 H 1.09000 * 109.47043 * 239.99639 * 2 1 3 30 30 H 1.08998 * 109.46875 * 119.99677 * 2 1 3 31 31 H 1.09005 * 110.84959 * 100.20147 * 5 3 2 32 32 H 1.08997 * 110.67464 * 337.05011 * 5 3 2 33 33 H 1.09000 * 109.46901 * 173.66842 * 8 6 5 34 34 H 1.09001 * 109.46953 * 293.66530 * 8 6 5 35 35 H 1.08997 * 109.47281 * 53.66824 * 8 6 5 36 36 H 1.08998 * 110.36697 * 204.15394 * 9 6 5 37 37 H 1.09001 * 110.46434 * 81.87278 * 9 6 5 38 38 H 0.96998 * 120.00555 * 0.02562 * 13 11 10 39 39 H 1.08996 * 109.47498 * 60.00521 * 14 13 11 40 40 H 1.08997 * 109.47468 * 300.00093 * 14 13 11 41 41 H 0.96995 * 119.99350 * 0.02562 * 17 15 14 42 42 H 0.96997 * 120.00504 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5926 1.9961 0.8255 5 6 1.6890 2.1262 -1.3383 6 6 2.9475 2.9845 -1.6331 7 1 3.0665 3.1485 -2.7040 8 6 2.8933 4.3153 -0.8801 9 6 4.0772 2.0798 -1.0810 10 7 3.5048 1.4549 0.1254 11 6 4.2081 0.9702 1.1679 12 8 3.6277 0.5573 2.1534 13 7 5.5546 0.9430 1.1181 14 6 6.3190 0.4156 2.2511 15 6 7.7923 0.4975 1.9448 16 8 8.1670 0.9522 0.8845 17 7 8.6937 0.0655 2.8490 18 6 10.0340 0.1406 2.5704 19 1 10.3675 0.5454 1.6263 20 6 10.9632 -0.3052 3.5023 21 7 10.5573 -0.7983 4.6509 22 14 12.7894 -0.2037 3.1227 23 1 13.1682 1.2128 2.8878 24 1 13.0875 -1.0038 1.9077 25 1 13.5642 -0.7389 4.2709 26 1 -0.3633 0.4322 -0.9324 27 1 -0.3633 -1.0235 0.0918 28 1 -0.3633 0.5914 0.8405 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.8074 2.7583 -1.2316 32 1 1.5367 1.3835 -2.1215 33 1 3.8351 4.8474 -1.0144 34 1 2.0752 4.9206 -1.2705 35 1 2.7311 4.1261 0.1810 36 1 4.9497 2.6788 -0.8203 37 1 4.3462 1.3171 -1.8119 38 1 6.0177 1.2726 0.3321 39 1 6.0410 -0.6239 2.4247 40 1 6.1004 1.0038 3.1423 41 1 8.3940 -0.2984 3.6967 42 1 9.6090 -0.8507 4.8483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358285362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:54 Heat of formation + Delta-G solvation = -78.623284 kcal Electronic energy + Delta-G solvation = -22635.764140 eV Core-core repulsion = 19229.261658 eV Total energy + Delta-G solvation = -3406.502482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51482 -38.72500 -37.75894 -34.76095 -34.16014 -33.50034 -32.48002 -31.20928 -28.63802 -27.32858 -26.78461 -24.46948 -23.72253 -21.82833 -20.35813 -19.83521 -19.54855 -18.24591 -17.97183 -16.30988 -15.94158 -15.75660 -15.22214 -14.88194 -14.73603 -14.22716 -13.97123 -13.79150 -13.71331 -13.66579 -13.46369 -12.95055 -12.55636 -12.40495 -12.29161 -11.93060 -11.75096 -11.67029 -11.32141 -11.30366 -11.10624 -11.01122 -10.90838 -10.54417 -10.24717 -10.00030 -9.90715 -9.66564 -8.92932 -8.66496 -8.42675 -8.15128 -6.83973 -3.98457 2.67077 3.24085 3.31274 3.36511 3.51667 3.71009 4.02528 4.21917 4.23758 4.43133 4.60451 4.75191 4.83180 4.98656 5.06310 5.17960 5.20545 5.27008 5.29834 5.38436 5.44784 5.57154 5.65819 5.71662 5.74556 5.78481 5.84570 5.87846 5.89628 5.91697 6.04559 6.09083 6.18351 6.41422 6.70967 7.19443 7.68453 7.97983 8.17035 8.46754 8.64892 8.78904 9.35411 9.69682 10.58935 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.003234 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.703745 B = 8654.677425 C = 9251.934826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.160 3.840 4 H 0.073 0.927 5 C -0.123 4.123 6 C -0.104 4.104 7 H 0.090 0.910 8 C -0.144 4.144 9 C 0.100 3.900 10 N -0.634 5.634 11 C 0.724 3.276 12 O -0.594 6.594 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.432 3.568 16 O -0.591 6.591 17 N -0.562 5.562 18 C -0.387 4.387 19 H 0.101 0.899 20 C -0.006 4.006 21 N -0.894 5.894 22 Si 1.093 2.907 23 H -0.283 1.283 24 H -0.283 1.283 25 H -0.278 1.278 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.406 0.594 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.379 0.621 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.775 5.678 -11.201 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.056 3.944 4 H 0.091 0.909 5 C -0.161 4.161 6 C -0.123 4.123 7 H 0.108 0.892 8 C -0.201 4.201 9 C -0.023 4.023 10 N -0.372 5.372 11 C 0.425 3.575 12 O -0.473 6.473 13 N -0.381 5.381 14 C 0.000 4.000 15 C 0.218 3.782 16 O -0.477 6.477 17 N -0.198 5.198 18 C -0.516 4.516 19 H 0.119 0.881 20 C -0.209 4.209 21 N -0.532 5.532 22 Si 0.918 3.082 23 H -0.209 1.209 24 H -0.209 1.209 25 H -0.203 1.203 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.244 0.756 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.213 0.787 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.310 5.311 -10.464 20.093 hybrid contribution -1.469 0.228 -0.482 1.563 sum -17.780 5.538 -10.947 21.601 Atomic orbital electron populations 1.21703 0.95302 1.01781 1.01589 1.21928 0.95926 0.96552 1.03181 1.21384 0.79253 0.96208 0.97550 0.90935 1.22811 0.97945 0.98865 0.96480 1.22321 0.94590 0.94942 1.00411 0.89165 1.21752 1.01958 0.95650 1.00718 1.22374 0.96881 0.95763 0.87285 1.47552 1.06633 1.64009 1.19016 1.15338 0.81347 0.78744 0.82045 1.90892 1.69652 1.54839 1.31911 1.44798 1.04024 1.67649 1.21665 1.20763 0.90219 1.00025 0.88967 1.19686 0.86758 0.85523 0.86254 1.90492 1.80318 1.51357 1.25563 1.41852 1.06728 1.54679 1.16539 1.20565 0.81095 1.43541 1.06361 0.88095 1.26591 1.07222 0.94464 0.92669 1.70894 1.17647 1.42036 1.22602 0.83118 0.72154 0.76947 0.75972 1.20908 1.20900 1.20296 0.92804 0.92657 0.92614 0.92046 0.90406 0.90018 0.90400 0.92237 0.92379 0.92327 0.90539 0.91451 0.75579 0.90101 0.90125 0.78703 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.69 37.16 0.36 -0.89 16 2 C -0.14 -1.53 5.41 -26.73 -0.14 -1.67 16 3 C 0.16 1.78 2.50 -66.95 -0.17 1.61 16 4 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 5 C -0.12 -0.95 5.22 -24.89 -0.13 -1.08 16 6 C -0.10 -0.82 3.72 -88.47 -0.33 -1.15 16 7 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 8 C -0.14 -1.17 9.24 37.16 0.34 -0.82 16 9 C 0.10 1.07 5.93 -2.53 -0.02 1.05 16 10 N -0.63 -8.50 3.05 -168.69 -0.51 -9.01 16 11 C 0.72 12.53 8.21 -86.92 -0.71 11.82 16 12 O -0.59 -11.99 15.53 5.29 0.08 -11.91 16 13 N -0.72 -12.91 5.49 -66.42 -0.36 -13.27 16 14 C 0.13 2.47 6.15 -5.19 -0.03 2.44 16 15 C 0.43 10.11 7.85 -10.98 -0.09 10.02 16 16 O -0.59 -15.44 15.24 5.54 0.08 -15.36 16 17 N -0.56 -14.01 5.28 -10.96 -0.06 -14.07 16 18 C -0.39 -10.69 9.68 -14.93 -0.14 -10.83 16 19 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 20 C -0.01 -0.16 5.50 -17.47 -0.10 -0.26 16 21 N -0.89 -24.80 13.68 55.50 0.76 -24.04 16 22 Si 1.09 23.81 29.92 -169.99 -5.09 18.72 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 30 H 0.08 1.12 6.89 -51.93 -0.36 0.76 16 31 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 32 H 0.08 0.54 7.77 -51.93 -0.40 0.14 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16 36 H 0.08 0.86 7.41 -51.93 -0.38 0.47 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.41 7.16 6.04 -40.82 -0.25 6.91 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.38 8.80 6.73 -40.82 -0.27 8.52 16 42 H 0.26 7.05 6.78 -40.82 -0.28 6.77 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -32.84 342.20 -7.65 -40.49 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.56 Total: 13.05 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.15 Total: 10.23 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.18 Total: -60.40 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: 0.17 Total: -27.26 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.09 Total: 18.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.84 -7.65 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358285362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.130 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds