Wall clock time and date at job start Tue Mar 31 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46951 * 2 1 4 4 H 1.08996 * 109.99929 * 53.70352 * 3 2 1 5 5 C 1.54328 * 109.98956 * 292.66159 * 3 2 1 6 6 C 1.55163 * 103.02106 * 218.66536 * 5 3 2 7 7 H 1.08998 * 111.00261 * 153.37786 * 6 5 3 8 8 C 1.52999 * 111.03720 * 277.22096 * 6 5 3 9 9 C 1.54907 * 101.57914 * 35.31144 * 6 5 3 10 10 N 1.47023 * 109.87869 * 174.79764 * 3 2 1 11 11 C 1.34779 * 125.65079 * 298.38868 * 10 3 2 12 12 O 1.21590 * 119.99556 * 354.68844 * 11 10 3 13 13 N 1.34768 * 120.00119 * 174.68091 * 11 10 3 14 14 C 1.46500 * 119.99908 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47187 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00214 * 0.02562 * 15 14 13 17 17 N 1.34785 * 120.00199 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99852 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00048 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99698 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99951 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00172 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47211 * 59.99886 * 22 20 18 24 24 H 1.48499 * 109.46969 * 300.00044 * 22 20 18 25 25 H 1.48498 * 109.47354 * 179.97438 * 22 20 18 26 26 H 1.09001 * 109.46893 * 65.13337 * 1 2 3 27 27 H 1.08997 * 109.46993 * 185.12790 * 1 2 3 28 28 H 1.09002 * 109.47076 * 305.13281 * 1 2 3 29 29 H 1.09000 * 109.47043 * 239.99639 * 2 1 3 30 30 H 1.08998 * 109.46875 * 119.99677 * 2 1 3 31 31 H 1.09005 * 110.84959 * 100.20147 * 5 3 2 32 32 H 1.08997 * 110.67464 * 337.05011 * 5 3 2 33 33 H 1.09000 * 109.46901 * 173.66842 * 8 6 5 34 34 H 1.09001 * 109.46953 * 293.66530 * 8 6 5 35 35 H 1.08997 * 109.47281 * 53.66824 * 8 6 5 36 36 H 1.08998 * 110.36697 * 204.15394 * 9 6 5 37 37 H 1.09001 * 110.46434 * 81.87278 * 9 6 5 38 38 H 0.96998 * 120.00555 * 0.02562 * 13 11 10 39 39 H 1.08996 * 109.47498 * 60.00521 * 14 13 11 40 40 H 1.08997 * 109.47468 * 300.00093 * 14 13 11 41 41 H 0.96995 * 119.99350 * 0.02562 * 17 15 14 42 42 H 0.96997 * 120.00504 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5926 1.9961 0.8255 5 6 1.6890 2.1262 -1.3383 6 6 2.9475 2.9845 -1.6331 7 1 3.0665 3.1485 -2.7040 8 6 2.8933 4.3153 -0.8801 9 6 4.0772 2.0798 -1.0810 10 7 3.5048 1.4549 0.1254 11 6 4.2081 0.9702 1.1679 12 8 3.6277 0.5573 2.1534 13 7 5.5546 0.9430 1.1181 14 6 6.3190 0.4156 2.2511 15 6 7.7923 0.4975 1.9448 16 8 8.1670 0.9522 0.8845 17 7 8.6937 0.0655 2.8490 18 6 10.0340 0.1406 2.5704 19 1 10.3675 0.5454 1.6263 20 6 10.9632 -0.3052 3.5023 21 7 10.5573 -0.7983 4.6509 22 14 12.7894 -0.2037 3.1227 23 1 13.1682 1.2128 2.8878 24 1 13.0875 -1.0038 1.9077 25 1 13.5642 -0.7389 4.2709 26 1 -0.3633 0.4322 -0.9324 27 1 -0.3633 -1.0235 0.0918 28 1 -0.3633 0.5914 0.8405 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.8074 2.7583 -1.2316 32 1 1.5367 1.3835 -2.1215 33 1 3.8351 4.8474 -1.0144 34 1 2.0752 4.9206 -1.2705 35 1 2.7311 4.1261 0.1810 36 1 4.9497 2.6788 -0.8203 37 1 4.3462 1.3171 -1.8119 38 1 6.0177 1.2726 0.3321 39 1 6.0410 -0.6239 2.4247 40 1 6.1004 1.0038 3.1423 41 1 8.3940 -0.2984 3.6967 42 1 9.6090 -0.8507 4.8483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358285362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:53 Heat of formation + Delta-G solvation = -101.276290 kcal Electronic energy + Delta-G solvation = -22636.746448 eV Core-core repulsion = 19229.261658 eV Total energy + Delta-G solvation = -3407.484790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68569 -40.45341 -39.07471 -36.64288 -35.56984 -34.55939 -33.56959 -33.18557 -29.63664 -28.68740 -27.62230 -26.28533 -24.77034 -22.84530 -21.81633 -21.01029 -20.80300 -20.09500 -19.39577 -17.68736 -17.48716 -17.17320 -16.65996 -16.38855 -15.88407 -15.73464 -15.44320 -15.19422 -14.84926 -14.47692 -14.44365 -14.15995 -13.86724 -13.64260 -13.41394 -13.25697 -12.94091 -12.80625 -12.56288 -12.47377 -12.08611 -11.96414 -11.91604 -11.78305 -11.60874 -11.59792 -11.37166 -11.27649 -10.64997 -10.38389 -10.19949 -9.55298 -8.98300 -6.14249 1.42760 1.45623 1.55756 1.83437 1.85724 2.02104 2.38904 2.77377 3.03538 3.11547 3.49459 3.59799 3.89173 3.94581 4.04938 4.21006 4.26506 4.27148 4.31102 4.45774 4.53858 4.60316 4.67526 4.71272 4.86775 4.90947 5.09185 5.11279 5.14692 5.17168 5.21488 5.26403 5.30864 5.44766 5.49476 5.56317 5.87577 5.97667 6.44314 6.59645 6.85262 7.30661 7.43351 7.71734 8.48357 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.003234 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.703745 B = 8654.677425 C = 9251.934826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.151 3.849 4 H 0.059 0.941 5 C -0.111 4.111 6 C -0.094 4.094 7 H 0.119 0.881 8 C -0.143 4.143 9 C 0.090 3.910 10 N -0.630 5.630 11 C 0.719 3.281 12 O -0.628 6.628 13 N -0.725 5.725 14 C 0.142 3.858 15 C 0.438 3.562 16 O -0.617 6.617 17 N -0.572 5.572 18 C -0.413 4.413 19 H 0.082 0.918 20 C -0.039 4.039 21 N -0.911 5.911 22 Si 1.136 2.864 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.274 1.274 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.408 0.592 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.387 0.613 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.857 6.389 -13.042 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.048 3.952 4 H 0.077 0.923 5 C -0.149 4.149 6 C -0.113 4.113 7 H 0.137 0.863 8 C -0.200 4.200 9 C -0.032 4.032 10 N -0.367 5.367 11 C 0.420 3.580 12 O -0.510 6.510 13 N -0.383 5.383 14 C 0.014 3.986 15 C 0.226 3.774 16 O -0.505 6.505 17 N -0.209 5.209 18 C -0.542 4.542 19 H 0.100 0.900 20 C -0.238 4.238 21 N -0.550 5.550 22 Si 0.955 3.045 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.199 1.199 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.246 0.754 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.221 0.779 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.444 6.038 -12.336 22.202 hybrid contribution -1.224 0.034 0.053 1.225 sum -18.668 6.072 -12.284 23.157 Atomic orbital electron populations 1.21668 0.93084 1.02202 1.02797 1.21871 0.97846 0.96135 1.01369 1.21651 0.77651 0.96467 0.99400 0.92307 1.22822 0.98495 0.99119 0.94427 1.22350 0.93212 0.93994 1.01712 0.86313 1.21753 1.02660 0.96158 0.99421 1.22649 0.97802 0.96419 0.86318 1.47667 1.07746 1.62642 1.18641 1.15482 0.81004 0.78830 0.82660 1.90861 1.70107 1.56441 1.33584 1.44740 1.04357 1.67984 1.21258 1.20573 0.87235 1.00990 0.89843 1.20337 0.88212 0.83594 0.85291 1.90469 1.81331 1.52038 1.26631 1.41879 1.06350 1.55426 1.17250 1.20602 0.82599 1.44832 1.06160 0.90038 1.27948 1.10776 0.93185 0.91875 1.70967 1.17682 1.43045 1.23289 0.82614 0.67733 0.77834 0.76344 1.19544 1.19530 1.19874 0.90290 0.92428 0.92911 0.91597 0.94413 0.87824 0.88723 0.92557 0.90282 0.94624 0.91475 0.90507 0.75432 0.89094 0.89127 0.77862 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.69 71.98 0.70 -1.44 16 2 C -0.13 -2.88 5.41 30.59 0.17 -2.72 16 3 C 0.15 3.20 2.50 45.34 0.11 3.31 16 4 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 5 C -0.11 -1.34 5.22 31.79 0.17 -1.18 16 6 C -0.09 -1.21 3.72 -9.40 -0.03 -1.25 16 7 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 8 C -0.14 -2.01 9.24 71.98 0.67 -1.35 16 9 C 0.09 1.80 5.93 86.85 0.52 2.31 16 10 N -0.63 -16.65 3.05 -805.87 -2.46 -19.11 16 11 C 0.72 25.21 8.21 179.06 1.47 26.68 16 12 O -0.63 -25.99 15.53 -4.00 -0.06 -26.05 16 13 N -0.73 -26.10 5.49 -482.31 -2.65 -28.75 16 14 C 0.14 5.49 6.15 85.63 0.53 6.02 16 15 C 0.44 20.77 7.85 87.66 0.69 21.45 16 16 O -0.62 -32.65 15.24 -3.08 -0.05 -32.70 16 17 N -0.57 -28.97 5.28 -306.97 -1.62 -30.60 16 18 C -0.41 -23.15 9.68 84.04 0.81 -22.34 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.04 -2.08 5.50 84.92 0.47 -1.61 16 21 N -0.91 -50.66 13.68 21.66 0.30 -50.36 16 22 Si 1.14 47.40 29.92 68.60 2.05 49.45 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H 0.08 0.83 7.65 -2.39 -0.02 0.81 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.33 8.02 -2.39 -0.02 1.31 16 30 H 0.04 1.11 6.89 -2.39 -0.02 1.10 16 31 H 0.10 0.88 8.05 -2.38 -0.02 0.86 16 32 H 0.09 0.90 7.77 -2.39 -0.02 0.88 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.03 0.66 7.83 -2.39 -0.02 0.64 16 36 H 0.07 1.46 7.41 -2.39 -0.02 1.45 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.41 14.47 6.04 -92.71 -0.56 13.91 16 39 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.39 18.26 6.73 -92.71 -0.62 17.64 16 42 H 0.26 14.08 6.78 -92.71 -0.63 13.45 16 Total: -1.00 -71.85 342.20 1.75 -70.10 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.02 Total: 40.12 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 6.25 Total: 27.89 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -6.43 Total: -128.82 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -0.11 Total: -58.75 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.05 Total: 49.45 kcal Total: -71.85 1.75 -70.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358285362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.177 kcal (2) G-P(sol) polarization free energy of solvation -71.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds