Wall clock time and date at job start Tue Mar 31 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.67571 * 2 1 4 4 C 1.54891 * 110.75804 * 236.75635 * 2 1 3 5 5 C 1.54263 * 104.19498 * 203.56018 * 4 2 1 6 6 C 1.53876 * 106.59871 * 23.61703 * 5 4 2 7 7 H 1.09001 * 110.02991 * 240.65968 * 6 5 4 8 8 N 1.46502 * 110.03263 * 119.28095 * 6 5 4 9 9 C 1.46499 * 120.00062 * 301.45336 * 8 6 5 10 10 C 1.34779 * 119.99726 * 121.45091 * 8 6 5 11 11 O 1.21582 * 120.00318 * 0.02562 * 10 8 6 12 12 N 1.34774 * 119.99640 * 180.02562 * 10 8 6 13 13 C 1.46499 * 120.00002 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47520 * 179.97438 * 13 12 10 15 15 O 1.21295 * 119.99450 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00074 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99755 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00001 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99762 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00118 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46853 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47188 * 119.99971 * 21 19 17 24 24 H 1.48501 * 109.46963 * 240.00440 * 21 19 17 25 25 C 1.54264 * 106.59936 * 359.97438 * 6 5 4 26 26 H 1.08996 * 109.47434 * 181.78252 * 1 2 3 27 27 H 1.08995 * 109.47153 * 301.78755 * 1 2 3 28 28 H 1.09000 * 109.46719 * 61.78653 * 1 2 3 29 29 H 1.09001 * 110.48263 * 84.88472 * 4 2 1 30 30 H 1.08998 * 110.48648 * 322.24628 * 4 2 1 31 31 H 1.08990 * 110.03334 * 264.32671 * 5 4 2 32 32 H 1.09004 * 110.02575 * 142.89892 * 5 4 2 33 33 H 1.09002 * 109.47391 * 89.99876 * 9 8 6 34 34 H 1.09001 * 109.46813 * 329.99933 * 9 8 6 35 35 H 1.09004 * 109.47041 * 210.00060 * 9 8 6 36 36 H 0.97001 * 120.00361 * 359.97438 * 12 10 8 37 37 H 1.09002 * 109.47093 * 299.99866 * 13 12 10 38 38 H 1.09006 * 109.47588 * 59.99611 * 13 12 10 39 39 H 0.96994 * 120.00413 * 0.02562 * 16 14 13 40 40 H 0.96999 * 119.99917 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.48404 * 95.06787 * 25 6 5 42 42 H 1.08997 * 110.48234 * 217.71264 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0197 0.0000 4 6 2.0789 -0.7940 -1.2113 5 6 3.4949 -1.2215 -0.7731 6 6 3.4973 -1.2224 0.7656 7 1 4.2363 -0.5130 1.1382 8 7 3.7956 -2.5666 1.2662 9 6 2.9360 -3.6936 0.8959 10 6 4.8608 -2.7662 2.0675 11 8 5.5739 -1.8308 2.3752 12 7 5.1355 -4.0028 2.5276 13 6 6.2930 -4.2199 3.3989 14 6 6.3758 -5.6780 3.7704 15 8 5.5495 -6.4592 3.3484 16 7 7.3686 -6.1141 4.5707 17 6 7.4442 -7.4408 4.9083 18 1 6.7085 -8.1364 4.5325 19 6 8.4681 -7.8906 5.7329 20 7 9.3636 -7.0443 6.1897 21 14 8.5716 -9.6983 6.1923 22 1 7.4528 -10.4364 5.5527 23 1 9.8649 -10.2555 5.7211 24 1 8.4795 -9.8402 7.6676 25 6 2.0829 -0.7948 1.2088 26 1 -0.3634 -1.0271 0.0320 27 1 -0.3633 0.5413 0.8735 28 1 -0.3633 0.4858 -0.9056 29 1 2.1290 -0.1566 -2.0942 30 1 1.4593 -1.6692 -1.4063 31 1 4.2320 -0.5111 -1.1473 32 1 3.7156 -2.2212 -1.1475 33 1 3.3100 -4.1500 -0.0206 34 1 1.9186 -3.3371 0.7353 35 1 2.9400 -4.4323 1.6975 36 1 4.5664 -4.7491 2.2824 37 1 7.2024 -3.9258 2.8749 38 1 6.1848 -3.6205 4.3030 39 1 8.0296 -5.4895 4.9079 40 1 10.0786 -7.3583 6.7651 41 1 1.4636 -1.6701 1.4047 42 1 2.1361 -0.1584 2.0921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358292314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:12 Heat of formation + Delta-G solvation = -76.032012 kcal Electronic energy + Delta-G solvation = -22306.107872 eV Core-core repulsion = 18899.717756 eV Total energy + Delta-G solvation = -3406.390116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35198 -38.67042 -37.90517 -34.85139 -34.42059 -33.62099 -31.37954 -30.89396 -28.84177 -27.51119 -26.72670 -25.00807 -24.20485 -20.98954 -20.27454 -19.63543 -19.15911 -18.35023 -17.82202 -16.44052 -15.99078 -15.61707 -15.45450 -14.77535 -14.60776 -14.36789 -14.12091 -13.85857 -13.61292 -13.38238 -13.29492 -13.01293 -12.49415 -12.43227 -12.04774 -11.96022 -11.67210 -11.63823 -11.59738 -11.18918 -11.13619 -10.93400 -10.74160 -10.67304 -10.40398 -10.31705 -9.89165 -9.63809 -8.87493 -8.61184 -8.40776 -8.08883 -6.50490 -3.92458 2.75509 3.10808 3.22887 3.29605 3.39395 3.76424 4.03420 4.18837 4.33815 4.42679 4.60372 4.90636 5.02515 5.05178 5.12080 5.18356 5.26720 5.28640 5.30141 5.36594 5.42828 5.53564 5.61886 5.65597 5.74256 5.84192 5.88199 5.91297 6.02708 6.05091 6.09414 6.10242 6.17438 6.58579 6.79398 7.11142 7.47118 7.93838 8.19686 8.46417 8.81758 9.05772 9.40891 9.88709 10.66541 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.047661 B = 0.002763 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.345989 B =10131.208327 C =10372.877874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.137 4.137 6 C 0.154 3.846 7 H 0.104 0.896 8 N -0.628 5.628 9 C 0.076 3.924 10 C 0.706 3.294 11 O -0.598 6.598 12 N -0.724 5.724 13 C 0.127 3.873 14 C 0.430 3.570 15 O -0.599 6.599 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.132 4.132 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.407 0.593 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.274 0.726 41 H 0.074 0.926 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.033 12.187 -11.956 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.176 4.176 6 C 0.050 3.950 7 H 0.122 0.878 8 N -0.365 5.365 9 C -0.067 4.067 10 C 0.407 3.593 11 O -0.477 6.477 12 N -0.383 5.383 13 C -0.002 4.002 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.170 4.170 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.854 12.262 -11.851 21.972 hybrid contribution 0.310 -0.941 0.392 1.066 sum -13.545 11.321 -11.459 21.046 Atomic orbital electron populations 1.21745 0.94873 1.01824 1.01569 1.22070 0.95442 0.99278 0.94823 0.90462 1.22415 0.95877 0.99697 0.97573 1.22541 0.97348 1.02340 0.95326 1.21576 0.97195 0.83321 0.92936 0.87802 1.47039 1.28477 1.08832 1.52176 1.21697 0.95084 0.89068 1.00881 1.15815 0.81084 0.83420 0.78978 1.90877 1.51420 1.41664 1.63742 1.44946 1.31687 1.08759 1.52900 1.20791 0.88785 0.95919 0.94662 1.19768 0.84999 0.88949 0.84758 1.90484 1.42762 1.56550 1.58733 1.41795 1.24627 1.10092 1.41939 1.19774 1.11780 0.84273 1.27503 0.87647 1.25329 0.95425 1.00415 0.96615 1.69625 1.14835 1.35173 1.33858 0.85760 0.78368 0.81721 0.78243 1.19150 1.20624 1.20617 1.22846 0.95897 1.00215 0.98074 0.92647 0.92679 0.92701 0.91672 0.91553 0.91145 0.91014 0.92705 0.90825 0.90993 0.75384 0.90033 0.90057 0.77007 0.91650 0.90781 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.28 37.16 0.34 -0.56 16 2 C -0.10 -0.72 3.48 -88.63 -0.31 -1.03 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -0.86 6.27 -25.07 -0.16 -1.02 16 5 C -0.14 -1.26 6.29 -25.61 -0.16 -1.43 16 6 C 0.15 1.75 3.31 -66.81 -0.22 1.52 16 7 H 0.10 1.40 6.94 -51.93 -0.36 1.04 16 8 N -0.63 -8.28 2.76 -178.38 -0.49 -8.77 16 9 C 0.08 0.79 9.14 59.85 0.55 1.34 16 10 C 0.71 12.16 8.28 -86.92 -0.72 11.44 16 11 O -0.60 -12.11 15.69 5.29 0.08 -12.03 16 12 N -0.72 -12.81 5.39 -66.41 -0.36 -13.17 16 13 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 14 C 0.43 10.00 7.85 -10.99 -0.09 9.91 16 15 O -0.60 -15.42 15.24 5.54 0.08 -15.34 16 16 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 18 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 20 N -0.89 -24.04 13.05 55.50 0.72 -23.31 16 21 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.13 -1.21 5.80 -25.08 -0.15 -1.36 16 26 H 0.05 0.35 8.13 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.70 7.16 -51.93 -0.37 0.33 16 33 H 0.05 0.53 7.88 -51.93 -0.41 0.12 16 34 H 0.07 0.60 6.36 -51.93 -0.33 0.27 16 35 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 36 H 0.41 7.01 5.17 -40.82 -0.21 6.80 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.07 0.67 6.12 -51.93 -0.32 0.35 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -31.43 340.00 -7.48 -38.91 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.39 Total: 13.50 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -1.18 Total: 13.34 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.18 Total: -59.08 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: 0.17 Total: -27.37 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.43 -7.48 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358292314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.122 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds