Wall clock time and date at job start Tue Mar 31 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.67571 * 2 1 4 4 C 1.54891 * 110.75804 * 236.75635 * 2 1 3 5 5 C 1.54263 * 104.19498 * 203.56018 * 4 2 1 6 6 C 1.53876 * 106.59871 * 23.61703 * 5 4 2 7 7 H 1.09001 * 110.02991 * 240.65968 * 6 5 4 8 8 N 1.46502 * 110.03263 * 119.28095 * 6 5 4 9 9 C 1.46499 * 120.00062 * 301.45336 * 8 6 5 10 10 C 1.34779 * 119.99726 * 121.45091 * 8 6 5 11 11 O 1.21582 * 120.00318 * 0.02562 * 10 8 6 12 12 N 1.34774 * 119.99640 * 180.02562 * 10 8 6 13 13 C 1.46499 * 120.00002 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47520 * 179.97438 * 13 12 10 15 15 O 1.21295 * 119.99450 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00074 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99755 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00001 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99762 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00118 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46853 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47188 * 119.99971 * 21 19 17 24 24 H 1.48501 * 109.46963 * 240.00440 * 21 19 17 25 25 C 1.54264 * 106.59936 * 359.97438 * 6 5 4 26 26 H 1.08996 * 109.47434 * 181.78252 * 1 2 3 27 27 H 1.08995 * 109.47153 * 301.78755 * 1 2 3 28 28 H 1.09000 * 109.46719 * 61.78653 * 1 2 3 29 29 H 1.09001 * 110.48263 * 84.88472 * 4 2 1 30 30 H 1.08998 * 110.48648 * 322.24628 * 4 2 1 31 31 H 1.08990 * 110.03334 * 264.32671 * 5 4 2 32 32 H 1.09004 * 110.02575 * 142.89892 * 5 4 2 33 33 H 1.09002 * 109.47391 * 89.99876 * 9 8 6 34 34 H 1.09001 * 109.46813 * 329.99933 * 9 8 6 35 35 H 1.09004 * 109.47041 * 210.00060 * 9 8 6 36 36 H 0.97001 * 120.00361 * 359.97438 * 12 10 8 37 37 H 1.09002 * 109.47093 * 299.99866 * 13 12 10 38 38 H 1.09006 * 109.47588 * 59.99611 * 13 12 10 39 39 H 0.96994 * 120.00413 * 0.02562 * 16 14 13 40 40 H 0.96999 * 119.99917 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.48404 * 95.06787 * 25 6 5 42 42 H 1.08997 * 110.48234 * 217.71264 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0197 0.0000 4 6 2.0789 -0.7940 -1.2113 5 6 3.4949 -1.2215 -0.7731 6 6 3.4973 -1.2224 0.7656 7 1 4.2363 -0.5130 1.1382 8 7 3.7956 -2.5666 1.2662 9 6 2.9360 -3.6936 0.8959 10 6 4.8608 -2.7662 2.0675 11 8 5.5739 -1.8308 2.3752 12 7 5.1355 -4.0028 2.5276 13 6 6.2930 -4.2199 3.3989 14 6 6.3758 -5.6780 3.7704 15 8 5.5495 -6.4592 3.3484 16 7 7.3686 -6.1141 4.5707 17 6 7.4442 -7.4408 4.9083 18 1 6.7085 -8.1364 4.5325 19 6 8.4681 -7.8906 5.7329 20 7 9.3636 -7.0443 6.1897 21 14 8.5716 -9.6983 6.1923 22 1 7.4528 -10.4364 5.5527 23 1 9.8649 -10.2555 5.7211 24 1 8.4795 -9.8402 7.6676 25 6 2.0829 -0.7948 1.2088 26 1 -0.3634 -1.0271 0.0320 27 1 -0.3633 0.5413 0.8735 28 1 -0.3633 0.4858 -0.9056 29 1 2.1290 -0.1566 -2.0942 30 1 1.4593 -1.6692 -1.4063 31 1 4.2320 -0.5111 -1.1473 32 1 3.7156 -2.2212 -1.1475 33 1 3.3100 -4.1500 -0.0206 34 1 1.9186 -3.3371 0.7353 35 1 2.9400 -4.4323 1.6975 36 1 4.5664 -4.7491 2.2824 37 1 7.2024 -3.9258 2.8749 38 1 6.1848 -3.6205 4.3030 39 1 8.0296 -5.4895 4.9079 40 1 10.0786 -7.3583 6.7651 41 1 1.4636 -1.6701 1.4047 42 1 2.1361 -0.1584 2.0921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358292314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:12 Heat of formation + Delta-G solvation = -96.924666 kcal Electronic energy + Delta-G solvation = -22307.013846 eV Core-core repulsion = 18899.717756 eV Total energy + Delta-G solvation = -3407.296089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57650 -40.23904 -39.15677 -36.26747 -35.93116 -35.22393 -33.37758 -31.64574 -29.76264 -28.92173 -27.72726 -26.46004 -25.37978 -22.11986 -21.39080 -20.90636 -20.38849 -20.03843 -19.32381 -17.70825 -17.28237 -17.03228 -16.76493 -16.38964 -16.03827 -15.88953 -15.46750 -15.15201 -14.70606 -14.46287 -14.04819 -13.99116 -13.91181 -13.55650 -13.53365 -13.20831 -13.08195 -12.91596 -12.54565 -12.44945 -12.27956 -12.10994 -11.84779 -11.62986 -11.58463 -11.42339 -11.36142 -11.22859 -10.56735 -10.31115 -10.10056 -9.51767 -8.51431 -6.01769 1.34977 1.42304 1.52287 1.59153 1.88253 2.06323 2.27824 2.85256 3.15703 3.16321 3.62593 3.68950 3.94313 4.18190 4.20917 4.34071 4.37606 4.43317 4.43792 4.50922 4.56438 4.62351 4.71754 4.74695 4.78839 4.95364 5.05461 5.12411 5.17135 5.22973 5.30443 5.36200 5.38615 5.39146 5.56541 5.58987 5.91833 5.94027 6.47173 6.88387 7.02877 7.40618 7.49092 7.93288 8.65815 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.047661 B = 0.002763 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.345989 B =10131.208327 C =10372.877874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.146 3.854 7 H 0.076 0.924 8 N -0.620 5.620 9 C 0.072 3.928 10 C 0.701 3.299 11 O -0.633 6.633 12 N -0.725 5.725 13 C 0.140 3.860 14 C 0.435 3.565 15 O -0.623 6.623 16 N -0.559 5.559 17 C -0.336 4.336 18 H 0.087 0.913 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.127 4.127 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.410 0.590 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.079 0.921 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.271 12.113 -12.863 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.096 0.904 4 C -0.148 4.148 5 C -0.171 4.171 6 C 0.043 3.957 7 H 0.094 0.906 8 N -0.356 5.356 9 C -0.070 4.070 10 C 0.402 3.598 11 O -0.515 6.515 12 N -0.384 5.384 13 C 0.011 3.989 14 C 0.222 3.778 15 O -0.512 6.512 16 N -0.194 5.194 17 C -0.465 4.465 18 H 0.105 0.895 19 C -0.212 4.212 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.165 4.165 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.125 12.209 -12.785 23.266 hybrid contribution 0.662 -0.858 0.637 1.257 sum -14.463 11.351 -12.148 22.036 Atomic orbital electron populations 1.21725 0.93712 1.02204 1.02115 1.22050 0.96289 0.99000 0.93753 0.90384 1.22392 0.94317 1.00246 0.97814 1.22494 0.98949 1.02259 0.93390 1.21759 0.97717 0.81774 0.94455 0.90552 1.47153 1.27345 1.10376 1.50751 1.21896 0.96017 0.88118 1.00997 1.15979 0.81809 0.82600 0.79377 1.90849 1.52961 1.42505 1.65204 1.44875 1.31346 1.09217 1.52943 1.20591 0.89961 0.92816 0.95499 1.20362 0.83772 0.90348 0.83349 1.90459 1.43471 1.57888 1.59333 1.41841 1.25300 1.09665 1.42637 1.19778 1.12466 0.85110 1.29140 0.89510 1.26154 0.94584 1.04604 0.95887 1.69691 1.15121 1.36899 1.33969 0.84797 0.78413 0.76483 0.78187 1.19357 1.19636 1.19620 1.22808 0.94522 1.00529 0.98674 0.92309 0.92717 0.91673 0.90388 0.90570 0.91266 0.91292 0.91562 0.88111 0.91710 0.75051 0.89186 0.89201 0.76709 0.91060 0.90223 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.28 71.98 0.67 -0.74 16 2 C -0.09 -1.16 3.48 -9.51 -0.03 -1.19 16 3 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -1.31 6.27 31.67 0.20 -1.11 16 5 C -0.13 -2.25 6.29 31.32 0.20 -2.05 16 6 C 0.15 3.23 3.31 45.72 0.15 3.39 16 7 H 0.08 2.12 6.94 -2.39 -0.02 2.10 16 8 N -0.62 -15.93 2.76 -836.53 -2.31 -18.24 16 9 C 0.07 1.37 9.14 127.77 1.17 2.54 16 10 C 0.70 24.15 8.28 179.05 1.48 25.63 16 11 O -0.63 -26.02 15.69 -3.97 -0.06 -26.08 16 12 N -0.72 -25.57 5.39 -482.30 -2.60 -28.17 16 13 C 0.14 5.39 6.15 85.63 0.53 5.92 16 14 C 0.43 20.45 7.85 87.66 0.69 21.14 16 15 O -0.62 -32.48 15.24 -3.08 -0.05 -32.53 16 16 N -0.56 -28.45 5.29 -306.99 -1.62 -30.07 16 17 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 18 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 20 N -0.92 -49.04 13.05 21.66 0.28 -48.75 16 21 Si 1.00 41.85 29.55 68.60 2.03 43.88 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 C -0.13 -2.17 5.80 31.66 0.18 -1.99 16 26 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.79 8.05 -2.39 -0.02 0.77 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.22 7.16 -2.38 -0.02 1.21 16 33 H 0.07 1.15 7.88 -2.39 -0.02 1.13 16 34 H 0.10 1.38 6.36 -2.39 -0.02 1.37 16 35 H 0.06 1.36 6.36 -2.38 -0.02 1.34 16 36 H 0.41 14.03 5.17 -92.71 -0.48 13.55 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 39 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 40 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 41 H 0.08 1.27 6.12 -2.39 -0.01 1.26 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -67.31 340.00 2.01 -65.30 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: -0.17 Total: 41.05 kcal Atomic # 6 Polarization: 27.10 SS G_CDS: 6.51 Total: 33.61 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -6.25 Total: -125.23 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -0.11 Total: -58.61 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -67.31 2.01 -65.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358292314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.625 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds